Wall clock time and date at job start Wed Apr 1 2020 05:09:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.70211 * 2 1
4 4 C 1.53189 * 109.58357 * 120.35351 * 2 1 3
5 5 H 1.08999 * 109.52729 * 54.45988 * 4 2 1
6 6 N 1.46499 * 109.50117 * 294.37011 * 4 2 1
7 7 C 1.34777 * 120.00056 * 155.15968 * 6 4 2
8 8 O 1.21600 * 119.99648 * 0.02562 * 7 6 4
9 9 C 1.47536 * 119.99931 * 180.02562 * 7 6 4
10 10 C 1.46398 * 120.25430 * 0.02562 * 9 7 6
11 11 C 1.35595 * 119.10490 * 179.97438 * 10 9 7
12 12 C 1.41170 * 119.48682 * 0.02562 * 11 10 9
13 13 N 1.32062 * 132.79302 * 180.02562 * 12 11 10
14 14 N 1.28587 * 109.71931 * 179.97438 * 13 12 11
15 15 C 1.31094 * 110.35486 * 359.97438 * 14 13 12
16 16 O 1.35689 * 126.33980 * 179.97438 * 15 14 13
17 17 N 1.36534 * 107.33180 * 0.02562 * 15 14 13
18 18 C 1.36022 * 133.11027 * 180.02562 * 17 15 14
19 19 C 1.53043 * 109.31048 * 174.42127 * 4 2 1
20 20 C 1.53040 * 109.53982 * 298.63531 * 19 4 2
21 21 C 1.53188 * 109.31045 * 61.36606 * 20 19 4
22 22 N 1.46928 * 108.77810 * 305.36087 * 21 20 19
23 23 C 1.36934 * 120.63812 * 233.61327 * 22 21 20
24 24 H 1.07993 * 120.00606 * 150.15845 * 23 22 21
25 25 C 1.38814 * 119.99558 * 330.16041 * 23 22 21
26 26 N 1.31622 * 119.99912 * 344.49646 * 25 23 22
27 27 Si 1.86798 * 120.00057 * 164.49834 * 25 23 22
28 28 H 1.48500 * 109.47091 * 59.99706 * 27 25 23
29 29 H 1.48501 * 109.47445 * 179.97438 * 27 25 23
30 30 H 1.48503 * 109.47076 * 300.00169 * 27 25 23
31 31 H 1.08998 * 109.47095 * 299.64441 * 1 2 3
32 32 H 1.08997 * 109.46987 * 59.64635 * 1 2 3
33 33 H 1.09003 * 109.46770 * 179.64555 * 1 2 3
34 34 H 0.96997 * 119.99822 * 335.17382 * 6 4 2
35 35 H 1.08001 * 120.44599 * 0.25249 * 10 9 7
36 36 H 1.08004 * 120.25652 * 180.02562 * 11 10 9
37 37 H 0.96701 * 113.99842 * 270.04735 * 16 15 14
38 38 H 1.08003 * 119.79481 * 359.96079 * 18 17 15
39 39 H 1.09001 * 109.45828 * 58.65713 * 19 4 2
40 40 H 1.09004 * 109.46386 * 178.61440 * 19 4 2
41 41 H 1.09004 * 109.49644 * 181.31346 * 20 19 4
42 42 H 1.09001 * 109.49654 * 301.41424 * 20 19 4
43 43 H 1.08997 * 109.59267 * 65.15044 * 21 20 19
44 44 H 1.09002 * 109.58896 * 185.58060 * 21 20 19
45 45 H 0.96999 * 119.99406 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0435 -0.7293 1.2454
5 1 1.6030 -1.7253 1.2919
6 7 1.6706 0.0268 2.4435
7 6 1.5503 -0.6042 3.6284
8 8 1.7519 -1.8011 3.7029
9 6 1.1742 0.1572 4.8348
10 6 0.9298 1.5982 4.7512
11 6 0.5848 2.2749 5.8744
12 6 0.4694 1.5789 7.0972
13 7 0.1573 1.9623 8.3217
14 7 0.1843 0.9495 9.1136
15 6 0.5112 -0.1358 8.4549
16 8 0.6355 -1.3838 8.9726
17 7 0.7045 0.2222 7.1516
18 6 1.0513 -0.4765 6.0373
19 6 3.5675 -0.8480 1.1702
20 6 3.9569 -1.6657 -0.0634
21 6 3.4651 -0.9470 -1.3236
22 7 2.0226 -0.6996 -1.1945
23 6 1.1537 -1.1131 -2.1687
24 1 0.1398 -1.3804 -1.9101
25 6 1.5762 -1.1889 -3.4888
26 7 2.6869 -0.5880 -3.8599
27 14 0.5685 -2.1437 -4.7387
28 1 -0.7921 -1.5558 -4.8306
29 1 1.2292 -2.0714 -6.0666
30 1 0.4667 -3.5627 -4.3125
31 1 -0.3633 0.5083 0.8931
32 1 -0.3633 0.5193 -0.8868
33 1 -0.3633 -1.0277 -0.0064
34 1 1.5100 0.9815 2.3840
35 1 1.0185 2.1144 3.8067
36 1 0.3998 3.3382 5.8339
37 1 1.5246 -1.5905 9.2917
38 1 1.2305 -1.5395 6.1045
39 1 4.0061 0.1474 1.0993
40 1 3.9379 -1.3448 2.0669
41 1 5.0413 -1.7696 -0.1036
42 1 3.4983 -2.6529 -0.0051
43 1 3.9903 0.0020 -1.4316
44 1 3.6518 -1.5718 -2.1971
45 1 2.9819 -0.6407 -4.7824
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000993993515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:09:45
Heat of formation + Delta-G solvation = 65.772914 kcal
Electronic energy + Delta-G solvation = -30051.623387 eV
Core-core repulsion = 25879.399870 eV
Total energy + Delta-G solvation = -4172.223517 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-44.00714 -40.28925 -38.47890 -38.15246 -37.47529 -34.73481 -34.10743 -32.72049
-31.97138 -31.50162 -29.43584 -29.31633 -26.53063 -25.32791 -24.86127 -24.19035
-22.99200 -22.36906 -20.93154 -20.81048 -19.89909 -19.51369 -18.56047 -17.68328
-17.40072 -17.04173 -16.49864 -15.83239 -15.41574 -15.39198 -15.10069 -14.86771
-14.52167 -13.97614 -13.86754 -13.77786 -13.52456 -13.05216 -13.01000 -12.79496
-12.66719 -12.63968 -12.13563 -11.83823 -11.63839 -11.62635 -11.22563 -10.99409
-10.93890 -10.82770 -10.69070 -10.42931 -10.33783 -10.17297 -10.13084 -10.02219
-9.78947 -9.50330 -8.90662 -8.63402 -8.53121 -6.75906 -5.87396 -3.32580
-0.02560 0.30772 1.33551 1.84742 2.48222 2.90414 3.13652 3.23709
3.33236 3.39540 3.41063 3.59046 3.95564 3.98287 4.29782 4.35239
4.43782 4.75972 5.00868 5.18840 5.24019 5.30152 5.32569 5.40242
5.43228 5.47342 5.64631 5.66866 5.83753 5.94124 5.98556 6.09096
6.20532 6.28583 6.39762 6.44875 6.57492 6.64427 6.71294 6.72354
6.87607 6.94579 7.30339 7.43037 7.57896 7.74212 7.93300 8.05338
8.36730 9.11934 9.74249 10.30275 11.21323
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.024530 B = 0.002249 C = 0.002214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1141.185312 B =12445.935154 C =12645.649681
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.168 3.832
3 H 0.029 0.971
4 C 0.129 3.871
5 H 0.090 0.910
6 N -0.704 5.704
7 C 0.567 3.433
8 O -0.534 6.534
9 C -0.147 4.147
10 C -0.062 4.062
11 C -0.080 4.080
12 C 0.214 3.786
13 N -0.271 5.271
14 N -0.237 5.237
15 C 0.322 3.678
16 O -0.426 6.426
17 N -0.405 5.405
18 C 0.137 3.863
19 C -0.117 4.117
20 C -0.140 4.140
21 C 0.169 3.831
22 N -0.581 5.581
23 C -0.256 4.256
24 H 0.070 0.930
25 C 0.007 3.993
26 N -0.901 5.901
27 Si 0.902 3.098
28 H -0.282 1.282
29 H -0.290 1.290
30 H -0.283 1.283
31 H 0.038 0.962
32 H 0.065 0.935
33 H 0.055 0.945
34 H 0.397 0.603
35 H 0.157 0.843
36 H 0.169 0.831
37 H 0.408 0.592
38 H 0.186 0.814
39 H 0.055 0.945
40 H 0.050 0.950
41 H 0.052 0.948
42 H 0.057 0.943
43 H 0.020 0.980
44 H 0.088 0.912
45 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.049 4.037 18.700 19.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.060 3.940
3 H 0.046 0.954
4 C 0.024 3.976
5 H 0.108 0.892
6 N -0.354 5.354
7 C 0.352 3.648
8 O -0.412 6.412
9 C -0.154 4.154
10 C -0.086 4.086
11 C -0.101 4.101
12 C -0.036 4.036
13 N -0.118 5.118
14 N -0.087 5.087
15 C 0.022 3.978
16 O -0.225 6.225
17 N -0.098 5.098
18 C 0.013 3.987
19 C -0.156 4.156
20 C -0.180 4.180
21 C 0.044 3.956
22 N -0.304 5.304
23 C -0.385 4.385
24 H 0.088 0.912
25 C -0.193 4.193
26 N -0.545 5.545
27 Si 0.732 3.268
28 H -0.208 1.208
29 H -0.216 1.216
30 H -0.209 1.209
31 H 0.057 0.943
32 H 0.084 0.916
33 H 0.074 0.926
34 H 0.232 0.768
35 H 0.175 0.825
36 H 0.186 0.814
37 H 0.265 0.735
38 H 0.203 0.797
39 H 0.074 0.926
40 H 0.069 0.931
41 H 0.071 0.929
42 H 0.076 0.924
43 H 0.038 0.962
44 H 0.106 0.894
45 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -0.740 3.847 19.818 20.201
hybrid contribution 0.402 -1.016 -1.572 1.914
sum -0.339 2.831 18.246 18.468
Atomic orbital electron populations
1.21834 0.95556 1.01840 1.00302 1.20562 0.93296 0.93582 0.86592
0.95362 1.21942 0.95394 0.96961 0.83296 0.89225 1.46025 1.68897
1.12388 1.08048 1.17511 0.77945 0.86743 0.82643 1.90837 1.50779
1.14158 1.85473 1.20733 1.06627 0.94397 0.93684 1.22352 0.95354
0.91608 0.99330 1.20220 1.01694 1.01265 0.86894 1.22168 1.03539
0.80286 0.97564 1.74968 1.20614 1.19405 0.96795 1.74548 1.16079
0.94046 1.24031 1.21873 1.07854 0.88949 0.79126 1.85028 1.36927
1.22581 1.77996 1.44026 1.46059 1.10698 1.08981 1.21778 0.94719
0.98974 0.83239 1.21769 0.95052 1.00241 0.98498 1.22189 0.99344
0.99722 0.96772 1.20840 0.83086 0.97233 0.94460 1.44017 1.03147
1.65037 1.18184 1.19098 0.95219 1.38226 0.85987 0.91238 1.25090
0.97858 0.99310 0.96999 1.70012 1.24052 1.43482 1.16924 0.86382
0.79594 0.80272 0.80571 1.20838 1.21623 1.20941 0.94332 0.91604
0.92581 0.76780 0.82501 0.81381 0.73460 0.79677 0.92596 0.93133
0.92891 0.92445 0.96178 0.89427 0.93515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.31 7.84 37.16 0.29 -2.01 16
2 C 0.17 3.03 3.03 -67.60 -0.20 2.83 16
3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
4 C 0.13 2.05 1.99 -67.81 -0.14 1.91 16
5 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16
6 N -0.70 -8.34 4.54 -54.73 -0.25 -8.59 16
7 C 0.57 6.94 7.74 -12.47 -0.10 6.85 16
8 O -0.53 -8.49 15.96 5.28 0.08 -8.41 16
9 C -0.15 -1.36 5.98 -103.46 -0.62 -1.98 16
10 C -0.06 -0.41 9.73 -37.24 -0.36 -0.77 16
11 C -0.08 -0.57 10.09 -39.41 -0.40 -0.96 16
12 C 0.21 2.22 7.91 -155.69 -1.23 0.99 16
13 N -0.27 -3.41 12.28 31.26 0.38 -3.02 16
14 N -0.24 -3.02 12.19 29.73 0.36 -2.66 16
15 C 0.32 3.38 9.39 -88.50 -0.83 2.55 16
16 O -0.43 -3.27 13.65 -18.77 -0.26 -3.53 16
17 N -0.41 -4.07 2.96 -63.68 -0.19 -4.25 16
18 C 0.14 1.27 10.54 -16.33 -0.17 1.10 16
19 C -0.12 -1.87 5.46 -26.69 -0.15 -2.02 16
20 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16
21 C 0.17 3.75 5.28 -3.71 -0.02 3.73 16
22 N -0.58 -13.21 2.99 -164.78 -0.49 -13.71 16
23 C -0.26 -6.47 8.58 -15.06 -0.13 -6.60 16
24 H 0.07 1.72 6.23 -52.49 -0.33 1.40 16
25 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16
26 N -0.90 -24.78 11.23 55.49 0.62 -24.16 16
27 Si 0.90 20.80 29.58 -169.99 -5.03 15.78 16
28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
31 H 0.04 0.51 7.78 -51.93 -0.40 0.10 16
32 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16
33 H 0.06 1.00 7.40 -51.93 -0.38 0.62 16
34 H 0.40 3.52 6.70 -40.82 -0.27 3.24 16
35 H 0.16 0.60 6.58 -52.49 -0.35 0.26 16
36 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16
37 H 0.41 0.87 9.06 45.56 0.41 1.28 16
38 H 0.19 1.57 7.58 -52.48 -0.40 1.18 16
39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16
42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16
44 H 0.09 2.20 6.15 -51.93 -0.32 1.89 16
45 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16
LS Contribution 369.21 15.07 5.56 5.56
Total: -1.00 -33.21 369.21 -8.42 -41.63
By element:
Atomic # 1 Polarization: 7.29 SS G_CDS: -4.92 Total: 2.37 kcal
Atomic # 6 Polarization: 7.28 SS G_CDS: -4.30 Total: 2.98 kcal
Atomic # 7 Polarization: -56.83 SS G_CDS: 0.44 Total: -56.39 kcal
Atomic # 8 Polarization: -11.76 SS G_CDS: -0.17 Total: -11.93 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.21 -8.42 -41.63 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000993993515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.406 kcal
(2) G-P(sol) polarization free energy of solvation -33.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.773 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds