Wall clock time and date at job start Wed Apr 1 2020 05:09:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.70211 * 2 1
4 4 C 1.53189 * 109.58357 * 120.35351 * 2 1 3
5 5 H 1.08999 * 109.52729 * 54.45988 * 4 2 1
6 6 N 1.46499 * 109.50117 * 294.37011 * 4 2 1
7 7 C 1.34777 * 120.00056 * 155.15968 * 6 4 2
8 8 O 1.21600 * 119.99648 * 0.02562 * 7 6 4
9 9 C 1.47536 * 119.99931 * 180.02562 * 7 6 4
10 10 C 1.46398 * 120.25430 * 0.02562 * 9 7 6
11 11 C 1.35595 * 119.10490 * 179.97438 * 10 9 7
12 12 C 1.41170 * 119.48682 * 0.02562 * 11 10 9
13 13 N 1.32062 * 132.79302 * 180.02562 * 12 11 10
14 14 N 1.28587 * 109.71931 * 179.97438 * 13 12 11
15 15 C 1.31094 * 110.35486 * 359.97438 * 14 13 12
16 16 O 1.35689 * 126.33980 * 179.97438 * 15 14 13
17 17 N 1.36534 * 107.33180 * 0.02562 * 15 14 13
18 18 C 1.36022 * 133.11027 * 180.02562 * 17 15 14
19 19 C 1.53043 * 109.31048 * 174.42127 * 4 2 1
20 20 C 1.53040 * 109.53982 * 298.63531 * 19 4 2
21 21 C 1.53188 * 109.31045 * 61.36606 * 20 19 4
22 22 N 1.46928 * 108.77810 * 305.36087 * 21 20 19
23 23 C 1.36934 * 120.63812 * 233.61327 * 22 21 20
24 24 H 1.07993 * 120.00606 * 150.15845 * 23 22 21
25 25 C 1.38814 * 119.99558 * 330.16041 * 23 22 21
26 26 N 1.31622 * 119.99912 * 344.49646 * 25 23 22
27 27 Si 1.86798 * 120.00057 * 164.49834 * 25 23 22
28 28 H 1.48500 * 109.47091 * 59.99706 * 27 25 23
29 29 H 1.48501 * 109.47445 * 179.97438 * 27 25 23
30 30 H 1.48503 * 109.47076 * 300.00169 * 27 25 23
31 31 H 1.08998 * 109.47095 * 299.64441 * 1 2 3
32 32 H 1.08997 * 109.46987 * 59.64635 * 1 2 3
33 33 H 1.09003 * 109.46770 * 179.64555 * 1 2 3
34 34 H 0.96997 * 119.99822 * 335.17382 * 6 4 2
35 35 H 1.08001 * 120.44599 * 0.25249 * 10 9 7
36 36 H 1.08004 * 120.25652 * 180.02562 * 11 10 9
37 37 H 0.96701 * 113.99842 * 270.04735 * 16 15 14
38 38 H 1.08003 * 119.79481 * 359.96079 * 18 17 15
39 39 H 1.09001 * 109.45828 * 58.65713 * 19 4 2
40 40 H 1.09004 * 109.46386 * 178.61440 * 19 4 2
41 41 H 1.09004 * 109.49644 * 181.31346 * 20 19 4
42 42 H 1.09001 * 109.49654 * 301.41424 * 20 19 4
43 43 H 1.08997 * 109.59267 * 65.15044 * 21 20 19
44 44 H 1.09002 * 109.58896 * 185.58060 * 21 20 19
45 45 H 0.96999 * 119.99406 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0435 -0.7293 1.2454
5 1 1.6030 -1.7253 1.2919
6 7 1.6706 0.0268 2.4435
7 6 1.5503 -0.6042 3.6284
8 8 1.7519 -1.8011 3.7029
9 6 1.1742 0.1572 4.8348
10 6 0.9298 1.5982 4.7512
11 6 0.5848 2.2749 5.8744
12 6 0.4694 1.5789 7.0972
13 7 0.1573 1.9623 8.3217
14 7 0.1843 0.9495 9.1136
15 6 0.5112 -0.1358 8.4549
16 8 0.6355 -1.3838 8.9726
17 7 0.7045 0.2222 7.1516
18 6 1.0513 -0.4765 6.0373
19 6 3.5675 -0.8480 1.1702
20 6 3.9569 -1.6657 -0.0634
21 6 3.4651 -0.9470 -1.3236
22 7 2.0226 -0.6996 -1.1945
23 6 1.1537 -1.1131 -2.1687
24 1 0.1398 -1.3804 -1.9101
25 6 1.5762 -1.1889 -3.4888
26 7 2.6869 -0.5880 -3.8599
27 14 0.5685 -2.1437 -4.7387
28 1 -0.7921 -1.5558 -4.8306
29 1 1.2292 -2.0714 -6.0666
30 1 0.4667 -3.5627 -4.3125
31 1 -0.3633 0.5083 0.8931
32 1 -0.3633 0.5193 -0.8868
33 1 -0.3633 -1.0277 -0.0064
34 1 1.5100 0.9815 2.3840
35 1 1.0185 2.1144 3.8067
36 1 0.3998 3.3382 5.8339
37 1 1.5246 -1.5905 9.2917
38 1 1.2305 -1.5395 6.1045
39 1 4.0061 0.1474 1.0993
40 1 3.9379 -1.3448 2.0669
41 1 5.0413 -1.7696 -0.1036
42 1 3.4983 -2.6529 -0.0051
43 1 3.9903 0.0020 -1.4316
44 1 3.6518 -1.5718 -2.1971
45 1 2.9819 -0.6407 -4.7824
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000993993515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:09:44
Heat of formation + Delta-G solvation = 41.223797 kcal
Electronic energy + Delta-G solvation = -30052.687916 eV
Core-core repulsion = 25879.399870 eV
Total energy + Delta-G solvation = -4173.288047 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-44.75628 -41.33438 -39.56672 -38.89600 -38.50939 -36.01146 -34.95962 -34.19525
-33.39939 -32.52834 -30.83356 -30.16045 -27.95384 -26.90208 -25.98726 -24.86955
-23.77439 -23.69999 -22.30552 -21.96732 -21.12202 -20.49374 -19.39582 -18.43367
-18.29990 -18.22651 -17.76105 -17.19102 -16.62455 -16.25190 -16.02700 -15.87238
-15.69277 -15.55258 -15.23900 -14.87281 -14.64875 -14.49694 -14.26604 -13.70211
-13.67015 -13.40145 -13.30472 -13.22015 -12.82217 -12.76965 -12.68528 -12.50861
-12.35190 -12.24893 -12.00923 -11.79788 -11.74579 -11.68521 -11.61382 -11.26123
-11.05362 -10.80566 -10.49578 -10.05398 -9.32989 -8.61405 -7.83714 -5.29219
-0.74620 -0.31640 0.61378 1.07607 1.48336 1.51187 1.56326 1.69504
1.95948 2.33369 2.51303 2.56966 2.94050 3.23626 3.32434 3.35792
3.54663 3.65251 3.71227 3.91373 4.04631 4.15702 4.25084 4.38734
4.41303 4.54991 4.63613 4.66510 4.76089 4.82109 4.86472 4.92268
4.97505 5.08476 5.13372 5.17363 5.23755 5.30587 5.37684 5.48649
5.52626 5.62264 5.74021 5.80418 6.23275 6.44323 6.48068 7.11430
7.15567 7.19901 7.90331 8.40769 9.22937
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.024530 B = 0.002249 C = 0.002214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1141.185312 B =12445.935154 C =12645.649681
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.164 3.836
3 H 0.040 0.960
4 C 0.147 3.853
5 H 0.062 0.938
6 N -0.692 5.692
7 C 0.573 3.427
8 O -0.573 6.573
9 C -0.147 4.147
10 C -0.046 4.046
11 C -0.078 4.078
12 C 0.211 3.789
13 N -0.304 5.304
14 N -0.271 5.271
15 C 0.326 3.674
16 O -0.429 6.429
17 N -0.408 5.408
18 C 0.137 3.863
19 C -0.110 4.110
20 C -0.131 4.131
21 C 0.175 3.825
22 N -0.600 5.600
23 C -0.252 4.252
24 H 0.072 0.928
25 C -0.047 4.047
26 N -0.932 5.932
27 Si 0.956 3.044
28 H -0.275 1.275
29 H -0.297 1.297
30 H -0.283 1.283
31 H 0.080 0.920
32 H 0.047 0.953
33 H 0.038 0.962
34 H 0.416 0.584
35 H 0.193 0.807
36 H 0.199 0.801
37 H 0.431 0.569
38 H 0.189 0.811
39 H 0.070 0.930
40 H 0.058 0.942
41 H 0.071 0.929
42 H 0.043 0.957
43 H 0.006 0.994
44 H 0.050 0.950
45 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.369 5.133 19.871 20.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.057 3.943
3 H 0.058 0.942
4 C 0.040 3.960
5 H 0.080 0.920
6 N -0.343 5.343
7 C 0.359 3.641
8 O -0.453 6.453
9 C -0.154 4.154
10 C -0.070 4.070
11 C -0.099 4.099
12 C -0.040 4.040
13 N -0.151 5.151
14 N -0.120 5.120
15 C 0.025 3.975
16 O -0.232 6.232
17 N -0.100 5.100
18 C 0.013 3.987
19 C -0.148 4.148
20 C -0.170 4.170
21 C 0.050 3.950
22 N -0.324 5.324
23 C -0.382 4.382
24 H 0.089 0.911
25 C -0.242 4.242
26 N -0.578 5.578
27 Si 0.786 3.214
28 H -0.201 1.201
29 H -0.223 1.223
30 H -0.210 1.210
31 H 0.099 0.901
32 H 0.066 0.934
33 H 0.058 0.942
34 H 0.255 0.745
35 H 0.210 0.790
36 H 0.216 0.784
37 H 0.293 0.707
38 H 0.206 0.794
39 H 0.089 0.911
40 H 0.077 0.923
41 H 0.089 0.911
42 H 0.062 0.938
43 H 0.024 0.976
44 H 0.069 0.931
45 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -1.168 4.976 21.050 21.661
hybrid contribution 0.541 -1.408 -1.862 2.396
sum -0.627 3.568 19.188 19.527
Atomic orbital electron populations
1.21767 0.94446 1.01095 1.01519 1.20750 0.94259 0.93740 0.85514
0.94194 1.21383 0.95033 0.95717 0.83823 0.91955 1.45703 1.68731
1.13081 1.06754 1.17767 0.76862 0.86280 0.83147 1.90833 1.52347
1.16082 1.86047 1.20494 1.07230 0.95547 0.92128 1.22649 0.93750
0.89987 1.00608 1.20623 1.01220 1.02569 0.85468 1.22738 1.02670
0.80591 0.97983 1.74872 1.22433 1.19904 0.97849 1.74454 1.17639
0.94891 1.25032 1.21932 1.06925 0.89256 0.79344 1.84987 1.39109
1.21204 1.77894 1.44062 1.46240 1.10801 1.08924 1.21852 0.94437
0.99217 0.83197 1.21697 0.95165 1.00602 0.97375 1.22022 1.00280
0.98791 0.95929 1.20629 0.83253 0.96161 0.95004 1.44251 1.03055
1.65939 1.19145 1.19375 0.95510 1.36769 0.86554 0.91058 1.25721
0.99035 1.00772 0.98715 1.70146 1.25645 1.45348 1.16646 0.85509
0.78565 0.79033 0.78340 1.20075 1.22342 1.20986 0.90122 0.93390
0.94235 0.74544 0.78986 0.78379 0.70716 0.79386 0.91118 0.92297
0.91055 0.93794 0.97583 0.93127 0.94288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.09 7.84 71.98 0.56 -3.53 16
2 C 0.16 5.62 3.03 44.97 0.14 5.76 16
3 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
4 C 0.15 4.34 1.99 45.07 0.09 4.43 16
5 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16
6 N -0.69 -13.89 4.54 -445.32 -2.02 -15.91 16
7 C 0.57 12.35 7.74 86.70 0.67 13.02 16
8 O -0.57 -17.20 15.96 -4.03 -0.06 -17.26 16
9 C -0.15 -2.24 5.98 -19.11 -0.11 -2.35 16
10 C -0.05 -0.40 9.73 23.78 0.23 -0.17 16
11 C -0.08 -0.82 10.09 22.38 0.23 -0.59 16
12 C 0.21 3.94 7.91 134.08 1.06 5.00 16
13 N -0.30 -7.40 12.28 -55.01 -0.68 -8.08 16
14 N -0.27 -6.81 12.19 -173.29 -2.11 -8.92 16
15 C 0.33 6.55 9.39 179.61 1.69 8.24 16
16 O -0.43 -6.08 13.65 -90.08 -1.23 -7.30 16
17 N -0.41 -7.48 2.96 -465.97 -1.38 -8.86 16
18 C 0.14 2.25 10.54 83.63 0.88 3.13 16
19 C -0.11 -3.26 5.46 30.62 0.17 -3.10 16
20 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16
21 C 0.18 7.85 5.28 86.36 0.46 8.30 16
22 N -0.60 -27.23 2.99 -675.23 -2.02 -29.25 16
23 C -0.25 -12.80 8.58 84.03 0.72 -12.08 16
24 H 0.07 3.53 6.23 -2.91 -0.02 3.51 16
25 C -0.05 -2.49 4.94 84.86 0.42 -2.07 16
26 N -0.93 -52.59 11.23 21.65 0.24 -52.34 16
27 Si 0.96 43.38 29.58 68.60 2.03 45.41 16
28 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16
29 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16
30 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
31 H 0.08 1.81 7.78 -2.39 -0.02 1.79 16
32 H 0.05 1.67 7.67 -2.39 -0.02 1.65 16
33 H 0.04 1.35 7.40 -2.39 -0.02 1.34 16
34 H 0.42 5.27 6.70 -92.71 -0.62 4.65 16
35 H 0.19 0.28 6.58 -2.91 -0.02 0.26 16
36 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16
37 H 0.43 1.22 9.06 -74.06 -0.67 0.55 16
38 H 0.19 2.91 7.58 -2.91 -0.02 2.89 16
39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
40 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16
41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16
42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16
44 H 0.05 2.63 6.15 -2.39 -0.01 2.62 16
45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16
Total: -1.00 -74.93 369.21 -0.07 -75.00
By element:
Atomic # 1 Polarization: 8.22 SS G_CDS: -0.23 Total: 7.99 kcal
Atomic # 6 Polarization: 12.14 SS G_CDS: 7.38 Total: 19.52 kcal
Atomic # 7 Polarization: -115.41 SS G_CDS: -7.96 Total: -123.36 kcal
Atomic # 8 Polarization: -23.27 SS G_CDS: -1.29 Total: -24.57 kcal
Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal
Total: -74.93 -0.07 -75.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000993993515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.224 kcal
(2) G-P(sol) polarization free energy of solvation -74.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.294 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds