Wall clock time and date at job start Wed Apr 1 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.51540 * 2 1 4 4 C 1.53621 * 109.43150 * 120.19785 * 2 1 3 5 5 N 1.46930 * 108.54121 * 174.72732 * 4 2 1 6 6 C 1.34782 * 120.62788 * 126.37649 * 5 4 2 7 7 O 1.21572 * 119.99925 * 3.51100 * 6 5 4 8 8 C 1.47674 * 119.99897 * 183.51302 * 6 5 4 9 9 C 1.39912 * 120.38917 * 129.48624 * 8 6 5 10 10 N 1.31451 * 121.14211 * 180.27692 * 9 8 6 11 11 C 1.32477 * 121.80383 * 359.48181 * 10 9 8 12 12 N 1.37876 * 133.44664 * 180.18923 * 11 10 9 13 13 H 0.97003 * 126.25447 * 0.29548 * 12 11 10 14 14 C 1.36517 * 107.49814 * 180.29189 * 12 11 10 15 15 O 1.35260 * 125.02427 * 179.97438 * 14 12 11 16 16 N 1.30725 * 109.95080 * 359.97438 * 14 12 11 17 17 C 1.35889 * 109.40009 * 0.02562 * 16 14 12 18 18 C 1.39417 * 133.63063 * 180.02562 * 17 16 14 19 19 C 1.46925 * 118.73934 * 306.10158 * 5 4 2 20 20 C 1.53186 * 108.77548 * 53.86131 * 19 5 4 21 21 C 1.53030 * 109.50264 * 239.91777 * 2 1 3 22 22 H 1.09000 * 109.45317 * 298.69452 * 21 2 1 23 23 N 1.46510 * 109.46106 * 58.66035 * 21 2 1 24 24 C 1.36936 * 119.99936 * 205.06898 * 23 21 2 25 25 H 1.08005 * 119.99950 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99944 * 179.97438 * 24 23 21 27 27 N 1.31621 * 119.99996 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 120.00166 * 180.02562 * 26 24 23 29 29 H 1.48502 * 109.46965 * 59.99797 * 28 26 24 30 30 H 1.48494 * 109.47180 * 180.02562 * 28 26 24 31 31 H 1.48504 * 109.47055 * 300.00508 * 28 26 24 32 32 H 1.09005 * 109.46451 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47357 * 300.08340 * 1 2 3 34 34 H 1.09000 * 109.47330 * 60.08822 * 1 2 3 35 35 H 1.09006 * 109.73964 * 54.99571 * 4 2 1 36 36 H 1.08997 * 109.66970 * 294.42668 * 4 2 1 37 37 H 1.08000 * 119.43198 * 0.02562 * 9 8 6 38 38 H 0.96702 * 114.00006 * 90.00306 * 15 14 12 39 39 H 1.08003 * 120.96697 * 359.97302 * 18 17 16 40 40 H 1.08998 * 109.58395 * 173.64737 * 19 5 4 41 41 H 1.09000 * 109.58792 * 293.92493 * 19 5 4 42 42 H 1.08991 * 109.50022 * 65.31779 * 20 19 5 43 43 H 1.09007 * 109.49262 * 185.38280 * 20 19 5 44 44 H 0.96998 * 119.99478 * 25.06569 * 23 21 2 45 45 H 0.97000 * 120.00037 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0411 -0.7287 1.2521 5 7 3.5046 -0.8288 1.1697 6 6 4.2811 -0.3860 2.1785 7 8 3.7708 0.0430 3.1951 8 6 5.7517 -0.4220 2.0488 9 6 6.5144 0.7187 2.3219 10 7 7.8238 0.7048 2.2061 11 6 8.4805 -0.3852 1.8377 12 7 9.8163 -0.6679 1.6461 13 1 10.5561 -0.0522 1.7669 14 6 9.9077 -1.9728 1.2554 15 8 11.0615 -2.6191 0.9713 16 7 8.7153 -2.5054 1.1965 17 6 7.7879 -1.5753 1.5448 18 6 6.3980 -1.5961 1.6526 19 6 4.1054 -1.4264 -0.0306 20 6 3.5710 -0.6948 -1.2658 21 6 2.0409 -0.7230 -1.2482 22 1 1.6969 -1.7573 -1.2350 23 7 1.5266 -0.0530 -2.4453 24 6 1.3953 -0.7497 -3.6168 25 1 1.6705 -1.7933 -3.6582 26 6 0.9075 -0.1150 -4.7509 27 7 0.5717 1.1567 -4.7003 28 14 0.7277 -1.0655 -6.3489 29 1 -0.2045 -2.2035 -6.1457 30 1 0.1904 -0.1667 -7.4017 31 1 2.0550 -1.5820 -6.7696 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3634 0.5151 0.8892 34 1 -0.3634 0.5125 -0.8908 35 1 1.6085 -1.7282 1.2987 36 1 1.7629 -0.1660 2.1432 37 1 6.0186 1.6276 2.6292 38 1 11.4660 -3.0552 1.7337 39 1 5.8371 -2.4931 1.4353 40 1 5.1896 -1.3242 0.0139 41 1 3.8399 -2.4821 -0.0852 42 1 3.9160 0.3390 -1.2540 43 1 3.9341 -1.1892 -2.1669 44 1 1.2791 0.8841 -2.4079 45 1 0.2312 1.6003 -5.4928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036088548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:36 Heat of formation + Delta-G solvation = 9.130768 kcal Electronic energy + Delta-G solvation = -30066.048076 eV Core-core repulsion = 25891.368371 eV Total energy + Delta-G solvation = -4174.679705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.58490 -41.54028 -39.84213 -38.91704 -37.87385 -36.24383 -35.13484 -34.34379 -33.09188 -32.50006 -31.04817 -30.57818 -27.75392 -26.82962 -25.43537 -24.78446 -24.05182 -23.15200 -22.93583 -21.45289 -20.56791 -20.44574 -19.47787 -19.03818 -18.44162 -18.02820 -17.32356 -17.20566 -16.82526 -16.69232 -15.95427 -15.68235 -15.63619 -15.44202 -15.25652 -14.95579 -14.75212 -14.35534 -14.15206 -13.88615 -13.62672 -13.41566 -13.40222 -13.16071 -12.95473 -12.80554 -12.73530 -12.45222 -12.34719 -12.18764 -12.14043 -12.01600 -11.79513 -11.64550 -11.24790 -11.12057 -10.84201 -10.46735 -10.07504 -9.74097 -9.63267 -8.93588 -7.89065 -5.16162 -0.52646 -0.29903 0.96953 1.37749 1.49613 1.50391 1.51598 1.57373 1.87167 2.38843 2.55990 2.60124 3.08471 3.33316 3.44199 3.49719 3.64323 3.79065 3.82595 3.87610 4.00799 4.08980 4.11101 4.32068 4.40388 4.50446 4.55141 4.69050 4.71748 4.79646 4.81492 4.83049 4.87115 4.99185 5.05276 5.17528 5.24471 5.34429 5.44062 5.52020 5.58364 5.65690 5.67514 6.27947 6.32757 6.36009 6.44840 6.65237 6.98770 7.39220 8.16172 8.38755 9.34306 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.002804 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.043188 B = 9984.082664 C =11626.199102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.055 0.945 4 C 0.127 3.873 5 N -0.595 5.595 6 C 0.575 3.425 7 O -0.564 6.564 8 C -0.186 4.186 9 C 0.186 3.814 10 N -0.487 5.487 11 C 0.255 3.745 12 N -0.574 5.574 13 H 0.444 0.556 14 C 0.487 3.513 15 O -0.433 6.433 16 N -0.502 5.502 17 C -0.004 4.004 18 C 0.019 3.981 19 C 0.108 3.892 20 C -0.142 4.142 21 C 0.179 3.821 22 H 0.051 0.949 23 N -0.731 5.731 24 C -0.230 4.230 25 H 0.077 0.923 26 C -0.077 4.077 27 N -0.971 5.971 28 Si 0.966 3.034 29 H -0.278 1.278 30 H -0.301 1.301 31 H -0.280 1.280 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.187 0.813 38 H 0.441 0.559 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.305 -7.257 17.882 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.074 0.926 4 C 0.005 3.995 5 N -0.326 5.326 6 C 0.363 3.637 7 O -0.444 6.444 8 C -0.194 4.194 9 C 0.019 3.981 10 N -0.200 5.200 11 C 0.017 3.983 12 N -0.203 5.203 13 H 0.287 0.713 14 C 0.181 3.819 15 O -0.239 6.239 16 N -0.235 5.235 17 C -0.124 4.124 18 C -0.008 4.008 19 C -0.015 4.015 20 C -0.183 4.183 21 C 0.071 3.929 22 H 0.069 0.931 23 N -0.370 5.370 24 C -0.362 4.362 25 H 0.095 0.905 26 C -0.269 4.269 27 N -0.622 5.622 28 Si 0.796 3.204 29 H -0.204 1.204 30 H -0.228 1.228 31 H -0.206 1.206 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.204 0.796 38 H 0.305 0.695 39 H 0.185 0.815 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.391 -7.239 17.623 27.184 hybrid contribution 0.054 0.491 -0.899 1.025 sum 19.445 -6.748 16.724 26.521 Atomic orbital electron populations 1.21576 0.93864 1.02096 1.01258 1.21694 0.96716 0.99200 0.94406 0.92621 1.21797 0.77936 1.01837 0.97920 1.48117 1.07260 1.59360 1.17821 1.18001 0.86007 0.76984 0.82743 1.90783 1.75274 1.48450 1.29871 1.20501 0.94068 0.96581 1.08226 1.22834 0.86276 0.97723 0.91312 1.66504 1.09838 1.26518 1.17156 1.18930 0.86011 0.92416 1.00899 1.42989 1.06422 1.13384 1.57519 0.71251 1.20236 0.87808 0.80037 0.93795 1.84856 1.31326 1.68209 1.39507 1.70740 0.97589 1.30316 1.24811 1.19431 0.94651 0.91469 1.06820 1.21028 0.90491 0.98291 0.91024 1.22131 0.98752 0.97974 0.82624 1.22479 0.98690 0.99929 0.97230 1.20442 0.91338 0.95546 0.85609 0.93099 1.42586 1.76823 1.10855 1.06738 1.19561 1.33639 0.94391 0.88567 0.90474 1.25467 1.03282 0.96897 1.01226 1.69809 1.52081 1.11065 1.29261 0.85314 0.77840 0.77408 0.79829 1.20432 1.22774 1.20611 0.92227 0.91484 0.94236 0.89218 0.88972 0.79594 0.69489 0.81545 0.88781 0.88635 0.93772 0.91795 0.79772 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.03 71.98 0.65 -3.35 16 2 C -0.10 -3.10 2.47 -10.57 -0.03 -3.12 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.13 3.24 5.74 86.51 0.50 3.73 16 5 N -0.59 -14.83 2.97 -821.66 -2.44 -17.26 16 6 C 0.57 15.02 7.25 86.74 0.63 15.64 16 7 O -0.56 -17.86 16.47 -3.94 -0.06 -17.92 16 8 C -0.19 -4.20 5.01 -20.01 -0.10 -4.30 16 9 C 0.19 4.08 10.88 85.16 0.93 5.01 16 10 N -0.49 -10.78 10.36 -191.60 -1.99 -12.77 16 11 C 0.25 5.25 8.45 133.83 1.13 6.38 16 12 N -0.57 -7.84 6.23 -306.99 -1.91 -9.75 16 13 H 0.44 3.18 8.96 -92.71 -0.83 2.35 16 14 C 0.49 7.13 9.39 179.72 1.69 8.81 16 15 O -0.43 -3.30 13.63 -85.44 -1.16 -4.46 16 16 N -0.50 -10.54 11.32 -306.40 -3.47 -14.01 16 17 C 0.00 -0.09 7.22 39.42 0.28 0.20 16 18 C 0.02 0.39 7.53 22.92 0.17 0.57 16 19 C 0.11 2.54 5.40 86.36 0.47 3.00 16 20 C -0.14 -4.57 5.66 30.67 0.17 -4.40 16 21 C 0.18 6.46 2.19 45.01 0.10 6.56 16 22 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 23 N -0.73 -34.98 4.41 -322.80 -1.42 -36.40 16 24 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 25 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 26 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 27 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 28 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 31 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 35 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.09 2.40 7.02 -2.39 -0.02 2.38 16 37 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.44 -1.89 9.06 -74.06 -0.67 -2.56 16 39 H 0.17 2.86 7.12 -2.91 -0.02 2.84 16 40 H 0.09 2.03 4.54 -2.39 -0.01 2.02 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.37 19.57 7.51 -92.71 -0.70 18.87 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -75.02 371.80 -3.37 -78.39 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -1.12 Total: 25.67 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.89 Total: 19.51 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -10.94 Total: -148.77 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.23 Total: -22.38 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.02 -3.37 -78.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036088548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.521 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds