Wall clock time and date at job start Wed Apr 1 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.49883 * 2 1 4 4 C 1.53196 * 109.49481 * 120.06364 * 2 1 3 5 5 N 1.46919 * 108.77520 * 174.61763 * 4 2 1 6 6 C 1.34777 * 120.63607 * 126.36655 * 5 4 2 7 7 O 1.21602 * 119.99497 * 3.79025 * 6 5 4 8 8 C 1.47538 * 120.00412 * 183.79276 * 6 5 4 9 9 C 1.46400 * 120.25077 * 309.94894 * 8 6 5 10 10 C 1.35601 * 119.10615 * 180.02562 * 9 8 6 11 11 C 1.41170 * 119.47987 * 0.02562 * 10 9 8 12 12 N 1.32065 * 132.78930 * 179.97438 * 11 10 9 13 13 N 1.28587 * 109.71857 * 179.72568 * 12 11 10 14 14 C 1.31091 * 110.35226 * 0.45707 * 13 12 11 15 15 O 1.35688 * 126.33603 * 179.81958 * 14 13 12 16 16 N 1.36535 * 107.33190 * 359.55028 * 14 13 12 17 17 C 1.36023 * 133.10477 * 180.25786 * 16 14 13 18 18 C 1.46929 * 118.73794 * 306.64278 * 5 4 2 19 19 C 1.52759 * 109.01047 * 53.30854 * 18 5 4 20 20 C 1.53041 * 109.52149 * 239.91178 * 2 1 3 21 21 H 1.09002 * 109.45535 * 58.65197 * 20 2 1 22 22 N 1.46502 * 109.46339 * 298.69290 * 20 2 1 23 23 C 1.36935 * 119.99737 * 154.99930 * 22 20 2 24 24 H 1.08000 * 120.00269 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99399 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99823 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00447 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47194 * 89.99901 * 27 25 23 29 29 H 1.48498 * 109.47470 * 210.00295 * 27 25 23 30 30 H 1.48503 * 109.46877 * 330.00598 * 27 25 23 31 31 H 1.08999 * 109.46805 * 299.94036 * 1 2 3 32 32 H 1.08995 * 109.46775 * 59.93433 * 1 2 3 33 33 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58704 * 54.82754 * 4 2 1 35 35 H 1.09005 * 109.58361 * 294.40002 * 4 2 1 36 36 H 1.07999 * 120.45068 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.25422 * 180.02562 * 10 9 8 38 38 H 0.96695 * 114.00021 * 269.68313 * 15 14 13 39 39 H 1.07991 * 119.79557 * 0.02562 * 17 16 14 40 40 H 1.08996 * 109.58909 * 173.14740 * 18 5 4 41 41 H 1.09004 * 109.58640 * 293.56752 * 18 5 4 42 42 H 1.08996 * 109.56936 * 185.55600 * 19 18 5 43 43 H 1.08998 * 109.38549 * 65.51123 * 19 18 5 44 44 H 0.96999 * 119.99326 * 335.00136 * 22 20 2 45 45 H 0.97001 * 120.00262 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 1.2499 5 7 3.5046 -0.8282 1.1703 6 6 4.2808 -0.3842 2.1787 7 8 3.7700 0.0453 3.1952 8 6 5.7500 -0.4192 2.0493 9 6 6.4240 -1.6475 1.6245 10 6 7.7754 -1.6539 1.5138 11 6 8.5023 -0.4805 1.8099 12 7 9.7917 -0.1955 1.7927 13 7 9.9702 1.0290 2.1421 14 6 8.8206 1.5982 2.4121 15 8 8.6332 2.8805 2.8142 16 7 7.8462 0.6639 2.2079 17 6 6.4913 0.6930 2.3252 18 6 4.1061 -1.4205 -0.0322 19 6 3.5715 -0.6944 -1.2653 20 6 2.0415 -0.7231 -1.2481 21 1 1.6588 -0.2248 -2.1388 22 7 1.5795 -2.1133 -1.2305 23 6 1.4500 -2.8066 -2.4042 24 1 1.6879 -2.3285 -3.3429 25 6 1.0128 -4.1240 -2.3874 26 7 0.8887 -4.7906 -3.5155 27 14 0.6019 -4.9512 -0.7637 28 1 -0.8320 -4.7321 -0.4454 29 1 0.8686 -6.4083 -0.8690 30 1 1.4424 -4.3707 0.3142 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6056 -1.7214 1.2983 35 1 1.7633 -0.1575 2.1390 36 1 5.8526 -2.5368 1.4030 37 1 8.2916 -2.5497 1.2015 38 1 8.6463 2.9977 3.7740 39 1 5.9992 1.6017 2.6387 40 1 5.1900 -1.3145 0.0112 41 1 3.8423 -2.4766 -0.0905 42 1 3.9345 -1.1890 -2.1662 43 1 3.9161 0.3396 -1.2540 44 1 1.3655 -2.5425 -0.3873 45 1 0.5828 -5.7111 -3.5038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:00 Heat of formation + Delta-G solvation = 68.964773 kcal Electronic energy + Delta-G solvation = -30778.718614 eV Core-core repulsion = 26606.633506 eV Total energy + Delta-G solvation = -4172.085108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.95567 -40.66267 -38.59503 -38.17949 -37.64882 -34.83256 -34.07951 -33.05324 -31.75978 -31.56346 -29.92366 -29.41039 -27.03207 -25.74985 -24.47534 -24.09251 -23.25562 -22.95223 -21.85646 -20.71152 -19.70689 -18.73539 -18.49885 -17.96212 -17.69545 -17.08487 -16.86250 -16.18871 -15.55224 -15.33253 -15.12343 -14.95895 -14.60041 -14.48785 -13.84354 -13.77613 -13.65387 -13.27539 -12.97988 -12.93515 -12.70599 -12.57995 -12.47539 -12.13425 -11.99700 -11.73647 -11.65392 -11.39091 -11.10129 -11.09206 -10.88541 -10.78105 -10.68352 -10.33576 -10.24181 -10.01070 -9.83999 -9.66206 -9.07728 -8.67578 -8.55486 -7.40225 -5.88295 -3.24737 0.07861 0.37270 1.36307 1.94093 2.36791 2.69645 2.92811 3.22717 3.23459 3.28034 3.35934 3.63834 3.88874 4.02895 4.22910 4.37755 4.46548 4.73828 4.90765 4.96907 5.02779 5.07092 5.18225 5.32568 5.35126 5.36774 5.46722 5.48356 5.49720 5.58396 5.69985 5.71366 5.74862 5.88989 6.02099 6.06556 6.12652 6.23464 6.27775 6.37914 6.52215 6.61210 6.70045 6.74843 7.23416 7.85059 7.87139 7.99305 8.30362 9.07821 9.80135 9.99297 11.29915 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.003050 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.758656 B = 9176.775179 C = 9912.546992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.589 5.589 6 C 0.568 3.432 7 O -0.538 6.538 8 C -0.134 4.134 9 C -0.061 4.061 10 C -0.079 4.079 11 C 0.216 3.784 12 N -0.270 5.270 13 N -0.237 5.237 14 C 0.319 3.681 15 O -0.427 6.427 16 N -0.403 5.403 17 C 0.122 3.878 18 C 0.102 3.898 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.244 4.244 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.931 5.931 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.407 0.593 39 H 0.178 0.822 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.914 11.204 13.135 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.354 3.646 7 O -0.417 6.417 8 C -0.141 4.141 9 C -0.085 4.085 10 C -0.100 4.100 11 C -0.034 4.034 12 N -0.117 5.117 13 N -0.087 5.087 14 C 0.019 3.981 15 O -0.226 6.226 16 N -0.096 5.096 17 C -0.002 4.002 18 C -0.020 4.020 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.374 4.374 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.578 5.578 27 Si 0.709 3.291 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.179 0.821 37 H 0.188 0.812 38 H 0.264 0.736 39 H 0.196 0.804 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.219 11.575 12.708 20.527 hybrid contribution -1.694 -0.518 1.670 2.434 sum 9.526 11.057 14.378 20.487 Atomic orbital electron populations 1.21676 0.93922 1.02923 1.01108 1.21775 0.96751 0.99301 0.95387 0.90945 1.21760 0.77792 1.01590 0.99305 1.48069 1.07296 1.58846 1.17746 1.17614 0.84973 0.78434 0.83562 1.90827 1.74471 1.47604 1.28755 1.20581 0.94677 0.94051 1.04795 1.22424 0.93805 0.97195 0.95117 1.20246 0.92684 0.95274 1.01808 1.22137 0.90331 0.87947 1.02991 1.74974 1.10555 1.05683 1.20512 1.74537 1.18116 1.01557 1.14501 1.21834 0.83056 0.85015 1.08150 1.85017 1.92697 1.15045 1.29848 1.43946 1.07211 1.12648 1.45748 1.21496 0.79865 1.00627 0.98199 1.22019 0.97129 0.99084 0.83747 1.22443 1.00117 0.99065 0.97524 1.20189 0.90826 0.86259 0.95302 0.91979 1.42836 1.80701 1.09283 1.05873 1.19038 1.37909 0.94165 0.86240 0.89141 1.24651 1.01422 0.96710 0.96022 1.69686 1.52794 1.10894 1.24471 0.86669 0.78517 0.79365 0.84517 1.21036 1.21707 1.20548 0.93426 0.92144 0.91600 0.90940 0.89161 0.82104 0.81245 0.73581 0.80441 0.90265 0.89494 0.89867 0.92933 0.80617 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.06 37.16 0.34 -1.50 16 2 C -0.11 -1.51 2.67 -90.49 -0.24 -1.75 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.12 1.59 5.41 -3.71 -0.02 1.57 16 5 N -0.59 -7.56 2.98 -174.25 -0.52 -8.08 16 6 C 0.57 7.17 7.25 -12.47 -0.09 7.08 16 7 O -0.54 -8.23 16.46 5.28 0.09 -8.14 16 8 C -0.13 -1.37 5.07 -103.46 -0.52 -1.90 16 9 C -0.06 -0.53 7.60 -37.24 -0.28 -0.81 16 10 C -0.08 -0.68 10.09 -39.41 -0.40 -1.08 16 11 C 0.22 2.44 7.91 -155.70 -1.23 1.21 16 12 N -0.27 -3.62 12.28 31.26 0.38 -3.23 16 13 N -0.24 -3.16 12.19 29.73 0.36 -2.80 16 14 C 0.32 3.49 9.38 -88.50 -0.83 2.66 16 15 O -0.43 -3.36 13.65 -18.77 -0.26 -3.61 16 16 N -0.40 -4.27 2.95 -63.68 -0.19 -4.45 16 17 C 0.12 1.16 10.63 -16.33 -0.17 0.99 16 18 C 0.10 1.29 5.11 -3.93 -0.02 1.27 16 19 C -0.15 -2.11 5.76 -26.83 -0.15 -2.26 16 20 C 0.18 2.95 2.53 -67.89 -0.17 2.77 16 21 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 22 N -0.74 -14.81 3.45 -53.38 -0.18 -15.00 16 23 C -0.24 -6.09 10.41 -15.06 -0.16 -6.25 16 24 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -27.45 13.97 55.49 0.78 -26.67 16 27 Si 0.88 20.36 27.73 -169.99 -4.71 15.64 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.00 7.54 -51.93 -0.39 0.61 16 34 H 0.07 1.07 6.64 -51.93 -0.34 0.73 16 35 H 0.09 1.21 7.02 -51.93 -0.36 0.84 16 36 H 0.16 1.18 7.16 -52.49 -0.38 0.81 16 37 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.41 0.95 9.06 45.56 0.41 1.36 16 39 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.08 0.83 4.51 -51.93 -0.23 0.59 16 41 H 0.09 1.26 7.74 -51.93 -0.40 0.86 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.36 7.17 3.79 -40.82 -0.15 7.02 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.26 365.51 -7.62 -40.89 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.82 Total: 7.82 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -4.05 Total: 2.13 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.63 Total: -60.23 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.17 Total: -11.75 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.71 Total: 15.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.26 -7.62 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.854 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds