Wall clock time and date at job start Wed Apr 1 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.49883 * 2 1 4 4 C 1.53196 * 109.49481 * 120.06364 * 2 1 3 5 5 N 1.46919 * 108.77520 * 174.61763 * 4 2 1 6 6 C 1.34777 * 120.63607 * 126.36655 * 5 4 2 7 7 O 1.21602 * 119.99497 * 3.79025 * 6 5 4 8 8 C 1.47538 * 120.00412 * 183.79276 * 6 5 4 9 9 C 1.46400 * 120.25077 * 309.94894 * 8 6 5 10 10 C 1.35601 * 119.10615 * 180.02562 * 9 8 6 11 11 C 1.41170 * 119.47987 * 0.02562 * 10 9 8 12 12 N 1.32065 * 132.78930 * 179.97438 * 11 10 9 13 13 N 1.28587 * 109.71857 * 179.72568 * 12 11 10 14 14 C 1.31091 * 110.35226 * 0.45707 * 13 12 11 15 15 O 1.35688 * 126.33603 * 179.81958 * 14 13 12 16 16 N 1.36535 * 107.33190 * 359.55028 * 14 13 12 17 17 C 1.36023 * 133.10477 * 180.25786 * 16 14 13 18 18 C 1.46929 * 118.73794 * 306.64278 * 5 4 2 19 19 C 1.52759 * 109.01047 * 53.30854 * 18 5 4 20 20 C 1.53041 * 109.52149 * 239.91178 * 2 1 3 21 21 H 1.09002 * 109.45535 * 58.65197 * 20 2 1 22 22 N 1.46502 * 109.46339 * 298.69290 * 20 2 1 23 23 C 1.36935 * 119.99737 * 154.99930 * 22 20 2 24 24 H 1.08000 * 120.00269 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99399 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99823 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00447 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47194 * 89.99901 * 27 25 23 29 29 H 1.48498 * 109.47470 * 210.00295 * 27 25 23 30 30 H 1.48503 * 109.46877 * 330.00598 * 27 25 23 31 31 H 1.08999 * 109.46805 * 299.94036 * 1 2 3 32 32 H 1.08995 * 109.46775 * 59.93433 * 1 2 3 33 33 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58704 * 54.82754 * 4 2 1 35 35 H 1.09005 * 109.58361 * 294.40002 * 4 2 1 36 36 H 1.07999 * 120.45068 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.25422 * 180.02562 * 10 9 8 38 38 H 0.96695 * 114.00021 * 269.68313 * 15 14 13 39 39 H 1.07991 * 119.79557 * 0.02562 * 17 16 14 40 40 H 1.08996 * 109.58909 * 173.14740 * 18 5 4 41 41 H 1.09004 * 109.58640 * 293.56752 * 18 5 4 42 42 H 1.08996 * 109.56936 * 185.55600 * 19 18 5 43 43 H 1.08998 * 109.38549 * 65.51123 * 19 18 5 44 44 H 0.96999 * 119.99326 * 335.00136 * 22 20 2 45 45 H 0.97001 * 120.00262 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 1.2499 5 7 3.5046 -0.8282 1.1703 6 6 4.2808 -0.3842 2.1787 7 8 3.7700 0.0453 3.1952 8 6 5.7500 -0.4192 2.0493 9 6 6.4240 -1.6475 1.6245 10 6 7.7754 -1.6539 1.5138 11 6 8.5023 -0.4805 1.8099 12 7 9.7917 -0.1955 1.7927 13 7 9.9702 1.0290 2.1421 14 6 8.8206 1.5982 2.4121 15 8 8.6332 2.8805 2.8142 16 7 7.8462 0.6639 2.2079 17 6 6.4913 0.6930 2.3252 18 6 4.1061 -1.4205 -0.0322 19 6 3.5715 -0.6944 -1.2653 20 6 2.0415 -0.7231 -1.2481 21 1 1.6588 -0.2248 -2.1388 22 7 1.5795 -2.1133 -1.2305 23 6 1.4500 -2.8066 -2.4042 24 1 1.6879 -2.3285 -3.3429 25 6 1.0128 -4.1240 -2.3874 26 7 0.8887 -4.7906 -3.5155 27 14 0.6019 -4.9512 -0.7637 28 1 -0.8320 -4.7321 -0.4454 29 1 0.8686 -6.4083 -0.8690 30 1 1.4424 -4.3707 0.3142 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6056 -1.7214 1.2983 35 1 1.7633 -0.1575 2.1390 36 1 5.8526 -2.5368 1.4030 37 1 8.2916 -2.5497 1.2015 38 1 8.6463 2.9977 3.7740 39 1 5.9992 1.6017 2.6387 40 1 5.1900 -1.3145 0.0112 41 1 3.8423 -2.4766 -0.0905 42 1 3.9345 -1.1890 -2.1662 43 1 3.9161 0.3396 -1.2540 44 1 1.3655 -2.5425 -0.3873 45 1 0.5828 -5.7111 -3.5038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:59 Heat of formation + Delta-G solvation = 44.788327 kcal Electronic energy + Delta-G solvation = -30779.766984 eV Core-core repulsion = 26606.633506 eV Total energy + Delta-G solvation = -4173.133477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.76568 -41.68397 -39.61024 -38.90978 -38.57872 -36.08732 -35.05456 -34.37750 -33.20046 -32.44572 -31.49342 -30.21681 -28.04404 -26.96503 -25.38663 -25.16522 -24.68124 -23.72438 -23.04695 -21.65487 -20.50342 -19.92933 -19.73946 -19.37619 -18.49300 -17.92028 -17.83436 -17.12503 -16.71407 -16.33895 -16.08448 -16.03424 -15.72050 -15.68093 -15.16886 -15.10792 -14.59914 -14.46402 -14.28735 -13.80851 -13.69929 -13.60752 -13.39764 -13.29833 -13.11257 -12.91005 -12.89920 -12.70359 -12.49110 -12.26176 -12.02955 -11.91635 -11.90577 -11.68154 -11.65783 -11.29061 -11.17730 -10.92084 -10.67742 -9.76461 -9.34438 -9.22182 -7.95093 -5.26786 -0.67293 -0.36341 0.58645 1.11978 1.38865 1.42853 1.46216 1.50129 1.78310 2.10035 2.50839 2.52675 2.91885 3.04498 3.34250 3.37021 3.42038 3.62978 3.63795 3.77522 3.97163 4.00062 4.05749 4.25817 4.32337 4.36433 4.46350 4.58085 4.62787 4.66884 4.71925 4.79357 4.82208 4.94165 4.99411 5.07544 5.12157 5.16146 5.24014 5.27682 5.36317 5.44087 5.57438 5.87239 6.22246 6.24226 6.28828 6.86149 7.15723 7.15752 7.91747 8.10240 9.26759 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.003050 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.758656 B = 9176.775179 C = 9912.546992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.092 0.908 4 C 0.119 3.881 5 N -0.588 5.588 6 C 0.576 3.424 7 O -0.564 6.564 8 C -0.143 4.143 9 C -0.056 4.056 10 C -0.075 4.075 11 C 0.211 3.789 12 N -0.303 5.303 13 N -0.272 5.272 14 C 0.331 3.669 15 O -0.427 6.427 16 N -0.406 5.406 17 C 0.131 3.869 18 C 0.108 3.892 19 C -0.145 4.145 20 C 0.176 3.824 21 H 0.047 0.953 22 N -0.740 5.740 23 C -0.212 4.212 24 H 0.059 0.941 25 C -0.061 4.061 26 N -0.986 5.986 27 Si 0.941 3.059 28 H -0.286 1.286 29 H -0.303 1.303 30 H -0.248 1.248 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.431 0.569 39 H 0.195 0.805 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.364 0.636 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 12.504 15.391 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 H 0.110 0.890 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.364 3.636 7 O -0.444 6.444 8 C -0.150 4.150 9 C -0.080 4.080 10 C -0.096 4.096 11 C -0.040 4.040 12 N -0.149 5.149 13 N -0.121 5.121 14 C 0.030 3.970 15 O -0.230 6.230 16 N -0.098 5.098 17 C 0.007 3.993 18 C -0.013 4.013 19 C -0.185 4.185 20 C 0.068 3.932 21 H 0.065 0.935 22 N -0.385 5.385 23 C -0.343 4.343 24 H 0.077 0.923 25 C -0.252 4.252 26 N -0.637 5.637 27 Si 0.770 3.230 28 H -0.212 1.212 29 H -0.230 1.230 30 H -0.173 1.173 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.195 0.805 37 H 0.211 0.789 38 H 0.293 0.707 39 H 0.212 0.788 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.198 0.802 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.723 12.945 15.022 23.037 hybrid contribution -1.834 -0.725 0.955 2.191 sum 9.890 12.220 15.978 22.415 Atomic orbital electron populations 1.21661 0.93790 1.01814 1.02237 1.21683 0.96814 0.99815 0.93783 0.88962 1.21696 0.78324 1.00990 0.99352 1.48044 1.07052 1.58923 1.17836 1.17767 0.85660 0.77417 0.82775 1.90821 1.75200 1.48700 1.29654 1.20423 0.93383 0.95059 1.06110 1.22566 0.93793 0.97096 0.94546 1.20534 0.92580 0.95213 1.01274 1.22541 0.90059 0.88846 1.02542 1.74884 1.11899 1.06079 1.22021 1.74450 1.19531 1.02042 1.16126 1.21876 0.82696 0.85559 1.06902 1.84983 1.92446 1.13295 1.32251 1.44002 1.07466 1.12469 1.45853 1.21708 0.79362 1.01127 0.97075 1.21951 0.98627 0.97807 0.82953 1.22308 0.98082 1.00513 0.97642 1.20412 0.92307 0.84121 0.96335 0.93469 1.42764 1.80815 1.10646 1.04234 1.18964 1.34689 0.93837 0.86843 0.92318 1.25342 1.02952 0.97759 0.99174 1.69867 1.55697 1.11065 1.27100 0.85624 0.78458 0.77518 0.81381 1.21224 1.23001 1.17254 0.91045 0.92355 0.93762 0.92114 0.88504 0.80518 0.78859 0.70672 0.78794 0.87636 0.91068 0.91611 0.90691 0.80200 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.06 71.98 0.65 -2.70 16 2 C -0.10 -2.46 2.67 -10.71 -0.03 -2.49 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.12 2.88 5.41 86.37 0.47 3.35 16 5 N -0.59 -13.27 2.98 -823.47 -2.45 -15.72 16 6 C 0.58 12.70 7.25 86.70 0.63 13.33 16 7 O -0.56 -15.58 16.46 -4.04 -0.07 -15.65 16 8 C -0.14 -2.46 5.07 -19.11 -0.10 -2.56 16 9 C -0.06 -0.78 7.60 23.79 0.18 -0.60 16 10 C -0.08 -1.09 10.09 22.38 0.23 -0.86 16 11 C 0.21 4.36 7.91 134.08 1.06 5.42 16 12 N -0.30 -7.84 12.28 -55.01 -0.68 -8.51 16 13 N -0.27 -7.03 12.19 -173.29 -2.11 -9.15 16 14 C 0.33 6.63 9.38 179.61 1.69 8.32 16 15 O -0.43 -5.68 13.65 -90.07 -1.23 -6.91 16 16 N -0.41 -7.63 2.95 -465.99 -1.38 -9.01 16 17 C 0.13 2.10 10.63 83.63 0.89 2.99 16 18 C 0.11 2.43 5.11 86.22 0.44 2.87 16 19 C -0.14 -3.75 5.76 30.53 0.18 -3.58 16 20 C 0.18 5.39 2.53 45.02 0.11 5.51 16 21 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 22 N -0.74 -28.83 3.45 -322.80 -1.11 -29.95 16 23 C -0.21 -10.72 10.41 84.03 0.87 -9.84 16 24 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 25 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 26 N -0.99 -59.99 13.97 21.65 0.30 -59.69 16 27 Si 0.94 42.09 27.73 68.60 1.90 43.99 16 28 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.25 -9.65 6.52 99.48 0.65 -9.00 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.27 7.54 -2.39 -0.02 1.25 16 34 H 0.06 1.64 6.64 -2.39 -0.02 1.62 16 35 H 0.10 2.28 7.02 -2.38 -0.02 2.26 16 36 H 0.18 1.94 7.16 -2.91 -0.02 1.92 16 37 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.43 0.86 9.06 -74.06 -0.67 0.18 16 39 H 0.20 2.40 8.06 -2.92 -0.02 2.38 16 40 H 0.11 1.83 4.51 -2.39 -0.01 1.82 16 41 H 0.07 1.87 7.74 -2.39 -0.02 1.86 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.36 13.84 3.79 -92.71 -0.35 13.49 16 45 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.79 365.51 0.90 -72.90 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.02 Total: 21.41 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.74 Total: 16.29 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -7.43 Total: -132.02 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.30 Total: -22.56 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.90 Total: 43.99 kcal Total: -73.79 0.90 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.687 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds