Wall clock time and date at job start Wed Apr 1 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.50308 * 2 1 4 4 C 1.53194 * 109.52630 * 120.08278 * 2 1 3 5 5 N 1.46920 * 108.77956 * 174.60013 * 4 2 1 6 6 C 1.34772 * 120.63175 * 126.41316 * 5 4 2 7 7 O 1.21607 * 120.00216 * 354.17763 * 6 5 4 8 8 C 1.47544 * 120.00407 * 174.17536 * 6 5 4 9 9 C 1.46402 * 120.25077 * 319.35106 * 8 6 5 10 10 C 1.35593 * 119.10696 * 179.97438 * 9 8 6 11 11 C 1.41173 * 119.48496 * 0.02562 * 10 9 8 12 12 N 1.32060 * 132.79528 * 180.02562 * 11 10 9 13 13 N 1.28598 * 109.71806 * 179.97438 * 12 11 10 14 14 C 1.31091 * 110.34954 * 359.97438 * 13 12 11 15 15 O 1.35696 * 126.33065 * 180.02562 * 14 13 12 16 16 N 1.36525 * 107.33391 * 0.02562 * 14 13 12 17 17 C 1.36026 * 133.09854 * 180.32672 * 16 14 13 18 18 C 1.46927 * 118.73888 * 306.39217 * 5 4 2 19 19 C 1.53187 * 108.77358 * 53.60712 * 18 5 4 20 20 C 1.53032 * 109.31712 * 305.36350 * 19 18 5 21 21 H 1.09001 * 109.46244 * 301.34876 * 20 19 18 22 22 N 1.46499 * 109.46662 * 181.38638 * 20 19 18 23 23 C 1.36939 * 119.99948 * 84.92906 * 22 20 19 24 24 H 1.08006 * 119.99696 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00108 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86792 * 120.00100 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47156 * 89.99842 * 27 25 23 29 29 H 1.48500 * 109.47342 * 209.99954 * 27 25 23 30 30 H 1.48500 * 109.47395 * 330.00125 * 27 25 23 31 31 H 1.08995 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46984 * 300.06486 * 1 2 3 33 33 H 1.09003 * 109.46796 * 60.05932 * 1 2 3 34 34 H 1.09000 * 109.58684 * 294.39232 * 4 2 1 35 35 H 1.09010 * 109.58324 * 54.81084 * 4 2 1 36 36 H 1.07999 * 120.44775 * 359.97438 * 9 8 6 37 37 H 1.08004 * 120.26161 * 179.97438 * 10 9 8 38 38 H 0.96696 * 113.99930 * 89.98041 * 15 14 13 39 39 H 1.07994 * 119.80178 * 359.91818 * 17 16 14 40 40 H 1.09006 * 109.58451 * 173.39645 * 18 5 4 41 41 H 1.09000 * 109.58679 * 293.67526 * 18 5 4 42 42 H 1.09007 * 109.49531 * 185.41421 * 19 18 5 43 43 H 1.09006 * 109.50028 * 65.31792 * 19 18 5 44 44 H 0.96997 * 119.99908 * 264.93624 * 22 20 19 45 45 H 0.96998 * 119.99729 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5052 -0.8284 1.1690 6 6 4.2818 -0.3855 2.1775 7 8 3.7814 0.2014 3.1176 8 6 5.7392 -0.6127 2.1410 9 6 6.2746 -1.8925 1.6732 10 6 7.6179 -2.0761 1.6488 11 6 8.4695 -1.0336 2.0740 12 7 9.7830 -0.9263 2.1588 13 7 10.0951 0.2364 2.6110 14 6 9.0140 0.9409 2.8419 15 8 8.9683 2.2094 3.3217 16 7 7.9426 0.1624 2.5104 17 6 6.5986 0.3704 2.5380 18 6 4.1059 -1.4256 -0.0316 19 6 3.5708 -0.6940 -1.2666 20 6 2.0408 -0.7227 -1.2486 21 1 1.6971 -1.7571 -1.2355 22 7 1.5259 -0.0527 -2.4453 23 6 1.3958 -0.7489 -3.6173 24 1 1.6725 -1.7921 -3.6593 25 6 0.9083 -0.1139 -4.7513 26 7 0.5716 1.1575 -4.7003 27 14 0.7302 -1.0637 -6.3498 28 1 -0.6215 -1.6754 -6.4143 29 1 0.9104 -0.1391 -7.4978 30 1 1.7601 -2.1320 -6.4084 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.7644 -0.1581 2.1388 35 1 1.6063 -1.7218 1.2978 36 1 5.6088 -2.6797 1.3518 37 1 8.0330 -3.0130 1.3076 38 1 8.9831 2.8903 2.6352 39 1 6.2090 1.3179 2.8795 40 1 5.1902 -1.3231 0.0127 41 1 3.8407 -2.4814 -0.0863 42 1 3.9333 -1.1885 -2.1678 43 1 3.9154 0.3401 -1.2547 44 1 1.2771 0.8841 -2.4074 45 1 0.2314 1.6013 -5.4928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:04 Heat of formation + Delta-G solvation = 62.820535 kcal Electronic energy + Delta-G solvation = -30189.621731 eV Core-core repulsion = 26017.270189 eV Total energy + Delta-G solvation = -4172.351542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.97880 -40.64526 -38.48504 -38.13729 -37.58938 -34.99123 -34.15799 -33.00727 -31.73524 -31.53172 -29.53803 -29.36739 -27.01159 -25.51083 -24.49083 -24.18673 -22.96966 -22.90757 -21.81216 -20.63372 -19.82946 -19.32832 -18.66978 -17.69506 -17.23892 -17.13281 -16.79586 -16.31493 -15.47644 -15.26905 -15.21975 -15.02925 -14.60132 -14.20210 -13.88043 -13.71455 -13.45363 -13.31233 -13.02526 -12.91034 -12.65285 -12.55912 -12.39316 -12.17416 -11.98838 -11.73369 -11.42644 -11.29779 -11.03182 -10.91489 -10.90469 -10.77703 -10.54008 -10.28689 -10.27643 -9.93487 -9.82381 -9.73856 -9.00793 -8.76034 -8.59612 -7.06854 -5.86693 -3.15989 0.02935 0.33557 1.36347 1.86660 2.41921 2.65823 2.91486 3.21749 3.35937 3.41339 3.43321 3.61582 3.85752 3.99002 4.18974 4.35677 4.49127 4.68724 4.87370 5.00878 5.09422 5.10598 5.17604 5.28990 5.33936 5.38734 5.40681 5.44395 5.55716 5.62593 5.67712 5.78714 5.93430 5.98145 6.01867 6.16154 6.20521 6.31248 6.35553 6.46558 6.67259 6.74673 6.79903 6.91193 7.17541 7.59476 7.82457 7.97027 8.31289 9.42972 9.99336 10.33775 11.35611 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.002606 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.627443 B =10742.161112 C =11587.101470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.569 3.431 7 O -0.535 6.535 8 C -0.141 4.141 9 C -0.061 4.061 10 C -0.081 4.081 11 C 0.215 3.785 12 N -0.270 5.270 13 N -0.237 5.237 14 C 0.322 3.678 15 O -0.427 6.427 16 N -0.405 5.405 17 C 0.129 3.871 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.408 0.592 39 H 0.181 0.819 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -4.071 14.509 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.356 3.644 7 O -0.413 6.413 8 C -0.148 4.148 9 C -0.086 4.086 10 C -0.102 4.102 11 C -0.035 4.035 12 N -0.117 5.117 13 N -0.087 5.087 14 C 0.022 3.978 15 O -0.226 6.226 16 N -0.097 5.097 17 C 0.006 3.994 18 C -0.025 4.025 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.266 0.734 39 H 0.198 0.802 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.951 -4.245 15.392 19.944 hybrid contribution -1.473 0.675 -1.384 2.131 sum 10.478 -3.570 14.008 17.854 Atomic orbital electron populations 1.21659 0.93899 1.01878 1.01992 1.21751 0.96763 1.00074 0.94437 0.91177 1.21826 0.77356 1.01278 0.99772 1.48040 1.07453 1.59475 1.17416 1.17606 0.84843 0.79173 0.82812 1.90837 1.74475 1.41518 1.34514 1.20587 0.94293 0.94951 1.04945 1.22431 0.95013 0.95721 0.95413 1.20227 0.91059 0.97515 1.01395 1.22143 0.92157 0.87342 1.01854 1.74969 1.07261 1.10736 1.18746 1.74552 1.20571 1.00084 1.13512 1.21864 0.81636 0.88924 1.05338 1.85018 1.94053 1.09289 1.34269 1.43976 1.06934 1.15090 1.43698 1.21616 0.79347 1.01305 0.97165 1.22240 0.97903 0.97707 0.84685 1.22717 1.00561 1.00405 0.95669 1.20198 0.90203 0.95804 0.86483 0.93267 1.42403 1.76400 1.11461 1.05758 1.19197 1.36206 0.94108 0.87666 0.91195 1.24737 1.01916 0.96002 0.98100 1.69656 1.49777 1.09478 1.29007 0.86227 0.77827 0.78695 0.83624 1.21708 1.21823 1.20758 0.92952 0.93736 0.90658 0.89051 0.90987 0.82154 0.81335 0.73413 0.80223 0.89982 0.90791 0.90271 0.92197 0.78200 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.15 0.34 -1.66 16 2 C -0.11 -1.60 2.46 -90.50 -0.22 -1.82 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.45 5.73 -3.71 -0.02 1.43 16 5 N -0.59 -6.72 2.97 -173.99 -0.52 -7.24 16 6 C 0.57 6.74 7.32 -12.47 -0.09 6.65 16 7 O -0.54 -7.98 16.33 5.27 0.09 -7.90 16 8 C -0.14 -1.34 5.16 -103.45 -0.53 -1.87 16 9 C -0.06 -0.44 7.62 -37.24 -0.28 -0.73 16 10 C -0.08 -0.61 10.09 -39.41 -0.40 -1.01 16 11 C 0.22 2.32 7.91 -155.70 -1.23 1.09 16 12 N -0.27 -3.52 12.28 31.26 0.38 -3.13 16 13 N -0.24 -3.13 12.19 29.73 0.36 -2.77 16 14 C 0.32 3.52 9.38 -88.51 -0.83 2.69 16 15 O -0.43 -3.43 13.65 -18.79 -0.26 -3.69 16 16 N -0.40 -4.21 2.95 -63.68 -0.19 -4.40 16 17 C 0.13 1.22 10.55 -16.33 -0.17 1.05 16 18 C 0.10 1.00 4.94 -3.71 -0.02 0.98 16 19 C -0.15 -2.20 5.66 -26.62 -0.15 -2.35 16 20 C 0.18 3.08 2.19 -67.89 -0.15 2.94 16 21 H 0.05 0.84 8.08 -51.93 -0.42 0.43 16 22 N -0.72 -16.09 4.41 -53.38 -0.24 -16.33 16 23 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 27 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.16 0.80 6.77 -52.49 -0.36 0.45 16 37 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.41 1.10 9.06 45.56 0.41 1.51 16 39 H 0.18 1.48 8.04 -52.49 -0.42 1.06 16 40 H 0.08 0.70 4.74 -51.93 -0.25 0.46 16 41 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.38 9.38 7.50 -40.82 -0.31 9.08 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -33.54 371.88 -8.08 -41.62 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.01 Total: 7.26 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -4.01 Total: 0.72 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.53 Total: -59.83 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.17 Total: -11.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.54 -8.08 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.437 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds