Wall clock time and date at job start Wed Apr 1 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.52540 * 2 1 4 4 C 1.52756 * 109.56708 * 240.04605 * 2 1 3 5 5 N 1.46927 * 109.01093 * 185.55059 * 4 2 1 6 6 C 1.34782 * 120.63116 * 233.58441 * 5 4 2 7 7 O 1.21591 * 120.00065 * 183.51334 * 6 5 4 8 8 C 1.47545 * 119.99827 * 3.50808 * 6 5 4 9 9 C 1.46397 * 120.25270 * 309.95205 * 8 6 5 10 10 C 1.35593 * 119.10356 * 179.97438 * 9 8 6 11 11 C 1.41181 * 119.48423 * 359.97438 * 10 9 8 12 12 N 1.32052 * 132.79071 * 180.02562 * 11 10 9 13 13 N 1.28594 * 109.72280 * 179.97438 * 12 11 10 14 14 C 1.31095 * 110.34696 * 359.97438 * 13 12 11 15 15 O 1.35684 * 126.33617 * 179.97438 * 14 13 12 16 16 N 1.36535 * 107.33416 * 0.02562 * 14 13 12 17 17 C 1.36019 * 133.10886 * 179.97438 * 16 14 13 18 18 C 1.46924 * 118.73697 * 53.30914 * 5 4 2 19 19 C 1.53186 * 108.77454 * 306.64423 * 18 5 4 20 20 C 1.53038 * 109.31636 * 54.63495 * 19 18 5 21 21 H 1.08998 * 109.46476 * 178.62833 * 20 19 18 22 22 N 1.46501 * 109.45583 * 58.65384 * 20 19 18 23 23 C 1.36943 * 120.00000 * 85.00774 * 22 20 19 24 24 H 1.07994 * 119.99813 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99824 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00469 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99870 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47214 * 59.99397 * 27 25 23 29 29 H 1.48506 * 109.47259 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47222 * 299.99365 * 27 25 23 31 31 H 1.08997 * 109.47693 * 299.91616 * 1 2 3 32 32 H 1.08997 * 109.47331 * 59.92520 * 1 2 3 33 33 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.51239 * 65.66424 * 4 2 1 35 35 H 1.09001 * 109.43249 * 305.38702 * 4 2 1 36 36 H 1.07993 * 120.45060 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.25928 * 180.02562 * 10 9 8 38 38 H 0.96702 * 114.00216 * 90.02425 * 15 14 13 39 39 H 1.08006 * 119.79506 * 0.02562 * 17 16 14 40 40 H 1.09000 * 109.58601 * 66.43131 * 18 5 4 41 41 H 1.09003 * 109.58357 * 186.71220 * 18 5 4 42 42 H 1.09004 * 109.49666 * 174.59139 * 19 18 5 43 43 H 1.09004 * 109.49848 * 294.64717 * 19 18 5 44 44 H 0.97000 * 120.00131 * 264.99547 * 22 20 19 45 45 H 0.97002 * 120.00497 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1695 6 6 4.2811 -0.3855 -2.1779 7 8 5.4862 -0.5401 -2.1305 8 6 3.6688 0.2876 -3.3394 9 6 2.5359 -0.3258 -4.0346 10 6 1.9908 0.3134 -5.0989 11 6 2.5245 1.5530 -5.5131 12 7 2.2087 2.3846 -6.4891 13 7 2.9962 3.4009 -6.4652 14 6 3.8572 3.2874 -5.4831 15 8 4.8332 4.1740 -5.1632 16 7 3.5908 2.1115 -4.8425 17 6 4.1534 1.4876 -3.7727 18 6 4.1053 -1.4266 0.0308 19 6 3.5708 -0.6949 1.2660 20 6 2.0408 -0.7230 1.2484 21 1 1.6581 -0.2242 2.1388 22 7 1.5784 -2.1130 1.2308 23 6 1.4468 -2.8057 2.4048 24 1 1.6843 -2.3274 3.3435 25 6 1.0092 -4.1229 2.3881 26 7 0.7203 -4.7060 1.2441 27 14 0.8304 -5.0680 3.9894 28 1 -0.1481 -4.3759 4.8661 29 1 0.3502 -6.4434 3.7015 30 1 2.1466 -5.1360 4.6737 31 1 -0.3634 0.5125 0.8907 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7645 -0.1497 -2.1346 35 1 1.6021 -1.7149 -1.2974 36 1 2.1396 -1.2745 -3.7042 37 1 1.1542 -0.1220 -5.6253 38 1 4.5571 4.8519 -4.5313 39 1 4.9885 1.9450 -3.2628 40 1 3.8375 -2.4817 0.0868 41 1 5.1897 -1.3267 -0.0150 42 1 3.9335 -1.1895 2.1671 43 1 3.9164 0.3388 1.2544 44 1 1.3653 -2.5427 0.3877 45 1 0.4141 -5.6264 1.2324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:07 Heat of formation + Delta-G solvation = 41.980380 kcal Electronic energy + Delta-G solvation = -30745.594023 eV Core-core repulsion = 26572.338784 eV Total energy + Delta-G solvation = -4173.255239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.74496 -41.63898 -39.51022 -38.89938 -38.57585 -35.95978 -34.94511 -34.24227 -33.36767 -32.33216 -30.92983 -30.19805 -27.59546 -26.98860 -25.90024 -25.08554 -24.72588 -23.70363 -22.92462 -21.58178 -20.47723 -19.82538 -19.40352 -19.23269 -18.42533 -18.02666 -17.68682 -17.22527 -16.63803 -16.13967 -16.03917 -15.94797 -15.82267 -15.63609 -15.27217 -14.91254 -14.52674 -14.28940 -14.21005 -13.77429 -13.65531 -13.49958 -13.35910 -13.13370 -12.94378 -12.88838 -12.81869 -12.63537 -12.45668 -12.19083 -12.11116 -11.92817 -11.82536 -11.66721 -11.56179 -11.36955 -11.05856 -10.84252 -10.65110 -9.69763 -9.32350 -8.89165 -7.87327 -5.11890 -0.65669 -0.34108 0.62297 1.09898 1.51331 1.52036 1.53800 1.57227 1.80626 2.11088 2.53313 2.61362 2.94096 3.07192 3.36892 3.43444 3.47675 3.65686 3.78147 3.90981 4.03128 4.11094 4.18610 4.33462 4.37700 4.44967 4.50134 4.60721 4.64752 4.71862 4.74468 4.84734 4.87504 4.99880 5.10325 5.10782 5.16556 5.18355 5.29086 5.34901 5.38584 5.52408 5.60974 5.66561 6.25976 6.29725 6.35782 6.90168 7.17595 7.44240 8.20280 8.43991 9.35333 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002686 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.880101 B =10422.881650 C =10777.396885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.107 3.893 5 N -0.584 5.584 6 C 0.572 3.428 7 O -0.571 6.571 8 C -0.140 4.140 9 C -0.056 4.056 10 C -0.072 4.072 11 C 0.211 3.789 12 N -0.301 5.301 13 N -0.272 5.272 14 C 0.330 3.670 15 O -0.428 6.428 16 N -0.405 5.405 17 C 0.130 3.870 18 C 0.127 3.873 19 C -0.140 4.140 20 C 0.172 3.828 21 H 0.045 0.955 22 N -0.722 5.722 23 C -0.227 4.227 24 H 0.071 0.929 25 C -0.068 4.068 26 N -0.964 5.964 27 Si 0.957 3.043 28 H -0.282 1.282 29 H -0.302 1.302 30 H -0.284 1.284 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.178 0.822 37 H 0.197 0.803 38 H 0.431 0.569 39 H 0.193 0.807 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.377 0.623 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 15.654 -9.312 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.015 4.015 5 N -0.314 5.314 6 C 0.360 3.640 7 O -0.451 6.451 8 C -0.147 4.147 9 C -0.081 4.081 10 C -0.092 4.092 11 C -0.040 4.040 12 N -0.147 5.147 13 N -0.121 5.121 14 C 0.029 3.971 15 O -0.231 6.231 16 N -0.097 5.097 17 C 0.006 3.994 18 C 0.005 3.995 19 C -0.181 4.181 20 C 0.063 3.937 21 H 0.063 0.937 22 N -0.364 5.364 23 C -0.360 4.360 24 H 0.089 0.911 25 C -0.261 4.261 26 N -0.615 5.615 27 Si 0.788 3.212 28 H -0.209 1.209 29 H -0.228 1.228 30 H -0.211 1.211 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.195 0.805 37 H 0.214 0.786 38 H 0.293 0.707 39 H 0.210 0.790 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.211 0.789 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.496 16.101 -10.736 19.665 hybrid contribution 0.481 -1.294 2.305 2.687 sum 3.977 14.807 -8.431 17.497 Atomic orbital electron populations 1.21611 0.93572 1.01808 1.02037 1.21581 0.96871 0.99531 0.94114 0.89155 1.22116 0.77733 1.01807 0.99810 1.48011 1.07766 1.58249 1.17328 1.17873 0.85706 0.78411 0.82049 1.90822 1.15431 1.59088 1.79779 1.20397 0.99760 0.95713 0.98852 1.22557 0.91767 1.00723 0.93033 1.20541 1.02176 0.89219 0.97281 1.22557 0.89095 0.98688 0.93628 1.74877 1.20971 1.00260 1.18621 1.74460 1.03079 1.17856 1.16693 1.21888 0.95494 0.86076 0.93624 1.84988 1.30208 1.40949 1.66934 1.44001 1.25082 1.17991 1.22667 1.21665 0.97610 0.93236 0.86841 1.21396 0.97835 0.96907 0.83348 1.22400 0.99043 0.99884 0.96762 1.20443 0.91470 0.85320 0.96466 0.93660 1.42526 1.79010 1.09272 1.05554 1.19470 1.34818 0.93897 0.87774 0.91137 1.25284 1.03667 0.98344 0.98804 1.69743 1.53720 1.12879 1.25155 0.85456 0.77623 0.77612 0.80490 1.20896 1.22826 1.21112 0.92865 0.90713 0.93863 0.86811 0.91358 0.80507 0.78601 0.70659 0.79026 0.92656 0.90270 0.92191 0.90910 0.78920 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.05 71.98 0.65 -2.51 16 2 C -0.10 -2.42 2.66 -10.86 -0.03 -2.45 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.11 2.39 4.36 86.22 0.38 2.77 16 5 N -0.58 -14.88 2.98 -823.49 -2.45 -17.34 16 6 C 0.57 14.30 7.25 86.70 0.63 14.93 16 7 O -0.57 -18.35 16.46 -4.00 -0.07 -18.42 16 8 C -0.14 -2.60 5.07 -19.11 -0.10 -2.69 16 9 C -0.06 -0.81 7.60 23.78 0.18 -0.63 16 10 C -0.07 -1.01 10.09 22.38 0.23 -0.78 16 11 C 0.21 4.31 7.91 134.08 1.06 5.37 16 12 N -0.30 -7.67 12.28 -55.01 -0.68 -8.34 16 13 N -0.27 -6.96 12.19 -173.29 -2.11 -9.07 16 14 C 0.33 6.67 9.38 179.61 1.69 8.36 16 15 O -0.43 -5.86 13.65 -90.02 -1.23 -7.09 16 16 N -0.41 -7.73 2.95 -465.98 -1.38 -9.10 16 17 C 0.13 2.21 10.63 83.63 0.89 3.10 16 18 C 0.13 3.92 6.17 86.36 0.53 4.45 16 19 C -0.14 -4.17 5.78 30.67 0.18 -3.99 16 20 C 0.17 5.50 2.53 45.02 0.11 5.61 16 21 H 0.05 1.53 8.08 -2.39 -0.02 1.51 16 22 N -0.72 -30.38 3.64 -322.82 -1.18 -31.56 16 23 C -0.23 -11.25 9.93 84.03 0.83 -10.42 16 24 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 25 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 26 N -0.96 -54.26 13.06 21.65 0.28 -53.97 16 27 Si 0.96 43.72 29.55 68.60 2.03 45.74 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.31 7.54 -2.39 -0.02 1.29 16 34 H 0.11 1.82 4.51 -2.39 -0.01 1.81 16 35 H 0.07 1.83 6.64 -2.39 -0.02 1.81 16 36 H 0.18 2.04 7.16 -2.91 -0.02 2.02 16 37 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.43 0.92 9.06 -74.06 -0.67 0.25 16 39 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.06 2.06 7.74 -2.39 -0.02 2.04 16 41 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.38 16.92 5.93 -92.71 -0.55 16.37 16 45 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -70.86 368.64 0.76 -70.10 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.16 Total: 21.09 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 7.70 Total: 17.96 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -7.51 Total: -129.39 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.29 Total: -25.51 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.86 0.76 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.081 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds