Wall clock time and date at job start Wed Apr 1 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.52297 * 2 1 4 4 C 1.52762 * 109.57033 * 240.04526 * 2 1 3 5 5 N 1.46917 * 109.01142 * 185.55291 * 4 2 1 6 6 C 1.34778 * 120.63073 * 233.58341 * 5 4 2 7 7 O 1.21681 * 120.00201 * 5.73195 * 6 5 4 8 8 C 1.46820 * 120.00192 * 185.72618 * 6 5 4 9 9 C 1.41301 * 126.50173 * 33.54465 * 8 6 5 10 10 N 1.30365 * 108.46565 * 179.97438 * 9 8 6 11 11 N 1.39991 * 109.30616 * 359.97438 * 10 9 8 12 12 C 1.35982 * 108.16796 * 359.97438 * 11 10 9 13 13 N 1.37180 * 120.55337 * 180.02562 * 12 11 10 14 14 H 0.96997 * 119.88010 * 180.02562 * 13 12 11 15 15 C 1.36347 * 120.24073 * 359.96920 * 13 12 11 16 16 C 1.35250 * 119.82931 * 0.08001 * 15 13 12 17 17 C 1.34859 * 131.92546 * 180.02562 * 11 10 9 18 18 O 1.21820 * 120.11170 * 359.67773 * 17 11 10 19 19 C 1.46923 * 118.74095 * 53.30994 * 5 4 2 20 20 C 1.53200 * 108.77543 * 306.64186 * 19 5 4 21 21 C 1.53039 * 109.49703 * 120.07619 * 2 1 3 22 22 H 1.09001 * 109.44772 * 61.31058 * 21 2 1 23 23 N 1.46491 * 109.46496 * 301.34006 * 21 2 1 24 24 C 1.36939 * 120.00388 * 154.92680 * 23 21 2 25 25 H 1.07999 * 119.99693 * 0.02562 * 24 23 21 26 26 C 1.38814 * 120.00267 * 179.97438 * 24 23 21 27 27 N 1.31616 * 119.99803 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99933 * 180.02562 * 26 24 23 29 29 H 1.48490 * 109.47219 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47045 * 120.00216 * 28 26 24 31 31 H 1.48506 * 109.46923 * 240.00061 * 28 26 24 32 32 H 1.09000 * 109.47167 * 299.91781 * 1 2 3 33 33 H 1.09006 * 109.46888 * 59.91948 * 1 2 3 34 34 H 1.08997 * 109.46734 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.50524 * 65.67088 * 4 2 1 36 36 H 1.09000 * 109.42969 * 305.39341 * 4 2 1 37 37 H 1.08005 * 125.76271 * 359.92149 * 9 8 6 38 38 H 1.08000 * 120.08865 * 180.02562 * 15 13 12 39 39 H 1.08003 * 120.14789 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.59002 * 66.42706 * 19 5 4 41 41 H 1.09006 * 109.58977 * 186.71323 * 19 5 4 42 42 H 1.08990 * 109.49660 * 174.58654 * 20 19 5 43 43 H 1.08999 * 109.49705 * 294.65095 * 20 19 5 44 44 H 0.97002 * 120.00118 * 334.93035 * 23 21 2 45 45 H 0.97007 * 119.99766 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1778 7 8 3.7809 0.2054 -3.1165 8 6 5.7309 -0.6153 -2.1436 9 6 6.3914 -1.7372 -1.5943 10 7 7.6756 -1.5794 -1.7542 11 7 7.9150 -0.3644 -2.4070 12 6 6.7163 0.2305 -2.6484 13 7 6.6558 1.4449 -3.2837 14 1 5.7955 1.8606 -3.4506 15 6 7.8008 2.0701 -3.6802 16 6 8.9998 1.4893 -3.4474 17 6 9.0562 0.2410 -2.7940 18 8 10.1323 -0.2863 -2.5753 19 6 4.1053 -1.4266 0.0309 20 6 3.5708 -0.6949 1.2661 21 6 2.0408 -0.7230 1.2484 22 1 1.6968 -1.7572 1.2351 23 7 1.5265 -0.0529 2.4453 24 6 1.3950 -0.7495 3.6169 25 1 1.6708 -1.7929 3.6586 26 6 0.9082 -0.1144 4.7512 27 7 0.5725 1.1572 4.7004 28 14 0.7295 -1.0646 6.3495 29 1 1.1724 -2.4669 6.1439 30 1 1.5673 -0.4302 7.3988 31 1 -0.6927 -1.0516 6.7767 32 1 -0.3633 0.5126 0.8907 33 1 -0.3633 0.5151 -0.8893 34 1 -0.3633 -1.0277 -0.0005 35 1 1.7647 -0.1496 -2.1345 36 1 1.6022 -1.7149 -1.2975 37 1 5.9132 -2.5821 -1.1212 38 1 7.7504 3.0263 -4.1798 39 1 9.9099 1.9798 -3.7597 40 1 3.8376 -2.4817 0.0869 41 1 5.1898 -1.3268 -0.0148 42 1 3.9334 -1.1895 2.1671 43 1 3.9164 0.3388 1.2545 44 1 1.2790 0.8843 2.4079 45 1 0.2320 1.6009 5.4930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036218240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:04 Heat of formation + Delta-G solvation = 32.737787 kcal Electronic energy + Delta-G solvation = -30421.403207 eV Core-core repulsion = 26247.747179 eV Total energy + Delta-G solvation = -4173.656028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.90942 -41.25254 -39.98372 -39.14877 -38.81348 -36.15184 -34.66269 -33.93013 -33.00916 -32.55563 -31.13637 -30.69056 -27.75981 -26.76515 -25.59741 -25.07629 -24.47917 -23.20135 -22.97492 -21.39859 -20.66382 -19.81427 -19.35431 -19.01221 -18.34776 -18.11273 -17.82067 -17.03574 -16.77303 -16.69454 -16.10137 -15.70639 -15.51500 -15.17407 -14.99524 -14.88709 -14.70380 -14.52503 -14.34187 -14.29518 -14.20574 -13.86365 -13.53670 -13.08891 -12.87718 -12.87366 -12.70235 -12.42893 -12.33394 -12.06793 -12.03342 -11.77437 -11.76881 -11.63455 -11.20202 -11.09413 -11.03229 -10.83607 -10.66494 -9.67213 -9.17286 -8.92379 -7.89371 -5.15882 -0.25954 -0.15862 0.72452 0.94889 1.43947 1.49362 1.50552 1.59274 1.82571 2.08629 2.23798 2.59752 2.99384 3.33267 3.44686 3.62829 3.66936 3.81065 3.86530 3.92209 3.97754 4.12637 4.15440 4.35951 4.44439 4.44981 4.50903 4.58158 4.72929 4.84580 4.86144 4.91005 4.95889 5.02568 5.08034 5.19463 5.25950 5.38627 5.47204 5.54780 5.60563 5.65457 5.69063 5.75532 5.85397 6.32818 6.39810 6.61051 7.09213 7.39574 8.16994 8.38733 9.34447 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002649 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.528815 B =10568.926788 C =11354.948365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.604 3.396 7 O -0.578 6.578 8 C -0.318 4.318 9 C 0.140 3.860 10 N -0.309 5.309 11 N -0.368 5.368 12 C 0.366 3.634 13 N -0.578 5.578 14 H 0.454 0.546 15 C 0.229 3.771 16 C -0.324 4.324 17 C 0.543 3.457 18 O -0.549 6.549 19 C 0.106 3.894 20 C -0.142 4.142 21 C 0.178 3.822 22 H 0.052 0.948 23 N -0.732 5.732 24 C -0.225 4.225 25 H 0.079 0.921 26 C -0.078 4.078 27 N -0.971 5.971 28 Si 0.964 3.036 29 H -0.264 1.264 30 H -0.300 1.300 31 H -0.298 1.298 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.259 0.741 39 H 0.204 0.796 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.370 0.630 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 1.228 -21.641 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.007 3.993 5 N -0.325 5.325 6 C 0.394 3.606 7 O -0.460 6.460 8 C -0.336 4.336 9 C -0.050 4.050 10 N -0.126 5.126 11 N -0.168 5.168 12 C 0.141 3.859 13 N -0.195 5.195 14 H 0.298 0.702 15 C 0.100 3.900 16 C -0.351 4.351 17 C 0.346 3.654 18 O -0.425 6.425 19 C -0.016 4.016 20 C -0.183 4.183 21 C 0.070 3.930 22 H 0.070 0.930 23 N -0.371 5.371 24 C -0.357 4.357 25 H 0.096 0.904 26 C -0.270 4.270 27 N -0.623 5.623 28 Si 0.794 3.206 29 H -0.188 1.188 30 H -0.228 1.228 31 H -0.226 1.226 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.254 0.746 38 H 0.275 0.725 39 H 0.221 0.779 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.202 0.798 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.904 0.568 -21.703 24.760 hybrid contribution -1.278 0.469 1.473 2.006 sum 10.627 1.038 -20.230 22.874 Atomic orbital electron populations 1.21575 0.93967 1.02077 1.01180 1.21527 0.96609 0.99188 0.94638 0.92898 1.21569 0.78137 1.01740 0.97823 1.47891 1.06979 1.60074 1.17590 1.16923 0.84380 0.77647 0.81652 1.90738 1.75329 1.44279 1.35661 1.19374 0.93001 1.00341 1.20933 1.24882 0.89140 0.97940 0.92999 1.77575 1.18423 0.97952 1.18670 1.48222 1.06661 1.16819 1.45058 1.18915 0.87247 0.87113 0.92644 1.41368 1.12969 1.14615 1.50587 0.70223 1.23418 0.82099 0.97419 0.87028 1.21904 1.02091 0.95825 1.15329 1.18254 0.81029 0.87027 0.79124 1.90882 1.28349 1.67124 1.56149 1.22192 0.98826 0.98208 0.82413 1.22477 0.98552 0.99824 0.97488 1.20465 0.91447 0.95578 0.85528 0.92995 1.42613 1.76798 1.10847 1.06809 1.19635 1.33178 0.94397 0.88471 0.90351 1.25447 1.03474 0.96888 1.01170 1.69817 1.52319 1.11054 1.29075 0.85200 0.76513 0.78462 0.80402 1.18809 1.22777 1.22573 0.94383 0.91502 0.92232 0.88981 0.89365 0.74557 0.72503 0.77884 0.88244 0.88425 0.91702 0.94136 0.79836 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.03 71.98 0.65 -3.14 16 2 C -0.10 -2.89 2.44 -10.86 -0.03 -2.91 16 3 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.13 2.98 5.70 86.22 0.49 3.47 16 5 N -0.60 -13.27 2.98 -824.28 -2.45 -15.72 16 6 C 0.60 14.03 7.59 86.49 0.66 14.69 16 7 O -0.58 -15.42 16.08 -4.29 -0.07 -15.49 16 8 C -0.32 -6.78 5.43 -20.02 -0.11 -6.89 16 9 C 0.14 2.84 9.54 85.66 0.82 3.66 16 10 N -0.31 -8.40 12.54 -56.31 -0.71 -9.11 16 11 N -0.37 -9.35 3.79 -315.77 -1.20 -10.55 16 12 C 0.37 7.30 7.87 132.61 1.04 8.34 16 13 N -0.58 -5.97 5.39 -191.03 -1.03 -7.00 16 14 H 0.45 3.31 8.54 -92.71 -0.79 2.52 16 15 C 0.23 0.82 11.25 83.30 0.94 1.76 16 16 C -0.32 -3.79 9.95 22.26 0.22 -3.56 16 17 C 0.54 13.68 7.69 84.91 0.65 14.33 16 18 O -0.55 -18.83 17.90 -4.73 -0.08 -18.91 16 19 C 0.11 2.22 5.28 86.37 0.46 2.67 16 20 C -0.14 -4.30 5.66 30.68 0.17 -4.12 16 21 C 0.18 6.12 2.19 45.02 0.10 6.22 16 22 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 23 N -0.73 -34.00 4.41 -322.82 -1.42 -35.42 16 24 C -0.22 -11.68 9.93 84.03 0.83 -10.84 16 25 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 26 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 27 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 28 Si 0.96 45.00 29.55 68.60 2.03 47.03 16 29 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 30 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 31 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 32 H 0.04 1.38 7.36 -2.39 -0.02 1.37 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.09 2.16 6.99 -2.39 -0.02 2.14 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.24 3.02 6.79 -2.91 -0.02 3.00 16 38 H 0.26 -2.53 8.06 -2.91 -0.02 -2.55 16 39 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.10 1.82 4.41 -2.38 -0.01 1.81 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.37 19.06 7.51 -92.71 -0.70 18.37 16 45 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -84.20 371.01 2.29 -81.92 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.43 Total: 21.23 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 7.36 Total: 19.81 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -6.53 Total: -135.58 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.15 Total: -34.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -84.20 2.29 -81.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036218240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.653 kcal (2) G-P(sol) polarization free energy of solvation -84.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds