Wall clock time and date at job start Wed Apr 1 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49615 * 2 1 4 4 C 1.53622 * 109.45680 * 120.20542 * 2 1 3 5 5 N 1.46925 * 108.54138 * 174.74200 * 4 2 1 6 6 C 1.34786 * 120.63028 * 126.36970 * 5 4 2 7 7 O 1.21643 * 119.99749 * 3.87348 * 6 5 4 8 8 C 1.47198 * 119.99655 * 183.88086 * 6 5 4 9 9 C 1.38840 * 120.90284 * 306.21282 * 8 6 5 10 10 C 1.39940 * 119.43039 * 179.73344 * 9 8 6 11 11 C 1.35014 * 121.27381 * 359.97438 * 10 9 8 12 12 N 1.36258 * 121.57706 * 0.02562 * 11 10 9 13 13 C 1.36367 * 133.87779 * 180.02562 * 12 11 10 14 14 O 1.35712 * 126.33451 * 359.95482 * 13 12 11 15 15 N 1.31104 * 107.33107 * 180.02562 * 13 12 11 16 16 N 1.28695 * 110.31264 * 359.90936 * 15 13 12 17 17 C 1.31474 * 109.66958 * 0.08423 * 16 15 13 18 18 C 1.46923 * 118.74122 * 306.09530 * 5 4 2 19 19 C 1.53193 * 108.77500 * 53.85856 * 18 5 4 20 20 C 1.53037 * 109.49995 * 239.93480 * 2 1 3 21 21 H 1.09005 * 109.45953 * 58.62534 * 20 2 1 22 22 N 1.46506 * 109.44849 * 298.66382 * 20 2 1 23 23 C 1.36937 * 119.99888 * 154.93615 * 22 20 2 24 24 H 1.08001 * 119.99942 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99697 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00128 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99855 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47061 * 90.00452 * 27 25 23 29 29 H 1.48499 * 109.47028 * 210.00290 * 27 25 23 30 30 H 1.48496 * 109.47120 * 330.00025 * 27 25 23 31 31 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47496 * 300.06259 * 1 2 3 33 33 H 1.08999 * 109.47059 * 60.06940 * 1 2 3 34 34 H 1.08997 * 109.73908 * 55.00584 * 4 2 1 35 35 H 1.08996 * 109.66395 * 294.43479 * 4 2 1 36 36 H 1.07998 * 120.28697 * 359.71563 * 9 8 6 37 37 H 1.08003 * 119.36415 * 180.02562 * 10 9 8 38 38 H 1.07989 * 119.21214 * 180.02562 * 11 10 9 39 39 H 0.96699 * 114.00201 * 90.00331 * 14 13 12 40 40 H 1.08999 * 109.58911 * 173.64752 * 18 5 4 41 41 H 1.09003 * 109.58406 * 294.07406 * 18 5 4 42 42 H 1.08997 * 109.49509 * 65.32204 * 19 18 5 43 43 H 1.09004 * 109.49674 * 185.41558 * 19 18 5 44 44 H 0.96998 * 119.99816 * 334.93613 * 22 20 2 45 45 H 0.97001 * 119.99735 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7287 1.2518 5 7 3.5053 -0.8282 1.1690 6 6 4.2819 -0.3852 2.1776 7 8 3.7715 0.0377 3.1976 8 6 5.7476 -0.4129 2.0447 9 6 6.4112 -1.5859 1.7108 10 6 7.8051 -1.5759 1.5871 11 6 8.5184 -0.4469 1.7857 12 7 7.9150 0.7296 2.1150 13 6 8.3735 1.9889 2.3668 14 8 9.6690 2.3926 2.3436 15 7 7.3314 2.7372 2.6368 16 7 6.2517 2.0400 2.5712 17 6 6.5454 0.7981 2.2551 18 6 4.1060 -1.4254 -0.0315 19 6 3.5709 -0.6939 -1.2666 20 6 2.0409 -0.7227 -1.2485 21 1 1.6577 -0.2243 -2.1390 22 7 1.5791 -2.1130 -1.2306 23 6 1.4476 -2.8059 -2.4044 24 1 1.6847 -2.3277 -3.3433 25 6 1.0105 -4.1233 -2.3874 26 7 0.7221 -4.7062 -1.2431 27 14 0.8318 -5.0688 -3.9885 28 1 2.1095 -5.7576 -4.3018 29 1 -0.2520 -6.0746 -3.8510 30 1 0.4958 -4.1259 -5.0853 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5128 -0.8906 34 1 1.6096 -1.7283 1.2983 35 1 1.7636 -0.1663 2.1431 36 1 5.8565 -2.4981 1.5482 37 1 8.3202 -2.4889 1.3269 38 1 9.5928 -0.4770 1.6812 39 1 9.9669 2.7092 1.4798 40 1 5.1902 -1.3228 0.0128 41 1 3.8387 -2.4807 -0.0875 42 1 3.9155 0.3401 -1.2546 43 1 3.9335 -1.1884 -2.1678 44 1 1.3665 -2.5426 -0.3873 45 1 0.4163 -5.6267 -1.2313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036265521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:16 Heat of formation + Delta-G solvation = 68.417417 kcal Electronic energy + Delta-G solvation = -30905.711943 eV Core-core repulsion = 26733.603100 eV Total energy + Delta-G solvation = -4172.108843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.81363 -40.24748 -38.46322 -38.03986 -37.62702 -34.58072 -33.86495 -32.74315 -31.49963 -31.38409 -29.40112 -29.21632 -26.56771 -25.62352 -24.41702 -23.82185 -23.49699 -22.95850 -21.69765 -20.67890 -19.24441 -18.56206 -18.24014 -17.66347 -17.38383 -17.20089 -16.42111 -16.01705 -15.83646 -15.18178 -14.90427 -14.50269 -14.45020 -14.03790 -13.90711 -13.42833 -13.32820 -13.09019 -12.95559 -12.83015 -12.59527 -12.46285 -12.21636 -12.03850 -11.79241 -11.44441 -11.24607 -11.10854 -10.95218 -10.83835 -10.75288 -10.51055 -10.50481 -10.23091 -9.93670 -9.88610 -9.79172 -9.58661 -8.98198 -8.44569 -8.28413 -7.02735 -5.84046 -3.12482 -0.04720 0.63467 1.45824 2.20010 2.50528 2.84831 3.20440 3.26268 3.36894 3.43791 3.44935 3.67007 3.91240 4.25819 4.32630 4.47865 4.52855 5.00190 5.04326 5.13512 5.23953 5.31009 5.36899 5.44449 5.47316 5.48972 5.53557 5.68731 5.75702 5.77776 5.90583 6.01278 6.06046 6.12799 6.19525 6.28537 6.35999 6.49330 6.57810 6.64652 6.72151 6.82406 6.88326 6.97405 7.55383 7.64197 8.16440 8.21629 8.34567 9.46353 10.02739 10.38205 11.38251 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003013 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.375657 B = 9289.704853 C =10116.092149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.566 3.434 7 O -0.522 6.522 8 C -0.070 4.070 9 C -0.049 4.049 10 C -0.134 4.134 11 C 0.078 3.922 12 N -0.404 5.404 13 C 0.312 3.688 14 O -0.427 6.427 15 N -0.237 5.237 16 N -0.253 5.253 17 C 0.234 3.766 18 C 0.105 3.895 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.404 0.596 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.285 7.018 3.311 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.321 5.321 6 C 0.351 3.649 7 O -0.399 6.399 8 C -0.077 4.077 9 C -0.074 4.074 10 C -0.156 4.156 11 C -0.044 4.044 12 N -0.096 5.096 13 C 0.012 3.988 14 O -0.226 6.226 15 N -0.087 5.087 16 N -0.100 5.100 17 C -0.018 4.018 18 C -0.017 4.017 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.261 0.739 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.356 8.505 4.665 19.016 hybrid contribution 1.059 -1.794 -1.608 2.631 sum 17.415 6.711 3.057 18.912 Atomic orbital electron populations 1.21663 0.94080 1.03196 1.00565 1.21797 0.96610 0.98977 0.95527 0.91402 1.21817 0.77466 1.01846 0.98922 1.48017 1.07319 1.59206 1.17568 1.17449 0.84768 0.78683 0.83964 1.90844 1.74108 1.46406 1.28528 1.20101 0.94133 0.89469 1.04042 1.21906 0.94405 0.97769 0.93282 1.20848 0.94007 0.98119 1.02619 1.21706 0.99948 0.83244 0.99477 1.44029 1.09595 1.09596 1.46402 1.21741 0.88078 0.80270 1.08665 1.85018 1.17695 1.82388 1.37516 1.74669 0.93645 1.24081 1.16308 1.74913 1.17190 0.98905 1.18956 1.22578 0.79752 0.95799 1.03688 1.22002 0.96720 0.99151 0.83867 1.22522 1.00627 0.98668 0.97273 1.20213 0.90648 0.87352 0.94965 0.93041 1.42484 1.79024 1.07665 1.06930 1.19213 1.37235 0.93800 0.86579 0.91280 1.24694 1.02269 0.97200 0.96560 1.69644 1.51724 1.13044 1.23619 0.86249 0.77266 0.79841 0.83158 1.21869 1.21890 1.20865 0.91017 0.93635 0.92778 0.90194 0.89452 0.82045 0.81709 0.81024 0.73851 0.91127 0.89147 0.93314 0.90684 0.78077 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.06 37.16 0.34 -1.83 16 2 C -0.11 -1.76 2.68 -90.28 -0.24 -2.00 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.12 2.00 5.43 -3.49 -0.02 1.98 16 5 N -0.59 -9.23 2.97 -173.85 -0.52 -9.75 16 6 C 0.57 9.33 7.26 -12.62 -0.09 9.24 16 7 O -0.52 -10.43 16.53 5.24 0.09 -10.34 16 8 C -0.07 -0.95 5.07 -102.69 -0.52 -1.47 16 9 C -0.05 -0.46 7.52 -38.72 -0.29 -0.75 16 10 C -0.13 -0.83 9.91 -40.09 -0.40 -1.23 16 11 C 0.08 0.54 10.94 -16.73 -0.18 0.35 16 12 N -0.40 -4.47 2.97 -62.52 -0.19 -4.65 16 13 C 0.31 3.67 9.41 -88.65 -0.83 2.83 16 14 O -0.43 -3.33 13.65 -18.84 -0.26 -3.58 16 15 N -0.24 -3.68 12.20 29.70 0.36 -3.31 16 16 N -0.25 -4.38 12.26 32.37 0.40 -3.98 16 17 C 0.23 3.42 7.94 -153.91 -1.22 2.19 16 18 C 0.10 1.52 5.29 -3.71 -0.02 1.50 16 19 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 20 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.70 3.64 -53.38 -0.19 -15.89 16 23 C -0.24 -5.92 9.93 -15.06 -0.15 -6.07 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.05 13.06 55.49 0.72 -25.32 16 27 Si 0.90 21.04 29.55 -169.99 -5.02 16.02 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.42 6.63 -51.93 -0.34 1.07 16 35 H 0.09 1.47 7.03 -51.93 -0.36 1.10 16 36 H 0.16 1.30 7.38 -52.49 -0.39 0.91 16 37 H 0.17 0.41 8.06 -52.48 -0.42 -0.01 16 38 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.40 0.87 9.06 45.56 0.41 1.28 16 40 H 0.07 0.84 4.72 -51.93 -0.24 0.59 16 41 H 0.09 1.49 7.74 -51.93 -0.40 1.08 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.38 8.98 5.92 -40.82 -0.24 8.74 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -34.81 369.44 -7.98 -42.79 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.89 Total: 7.60 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -4.06 Total: 4.86 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.59 Total: -62.91 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.17 Total: -13.92 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.81 -7.98 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036265521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.206 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds