Wall clock time and date at job start Wed Apr 1 2020 05:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58448 * 2 1 4 4 C 1.53191 * 109.58454 * 120.27790 * 2 1 3 5 5 C 1.53046 * 109.31254 * 174.56528 * 4 2 1 6 6 H 1.08997 * 109.45728 * 58.64520 * 5 4 2 7 7 N 1.46497 * 109.45929 * 178.61433 * 5 4 2 8 8 C 1.36933 * 120.00021 * 205.03014 * 7 5 4 9 9 H 1.08001 * 120.00010 * 359.72273 * 8 7 5 10 10 C 1.38812 * 120.00246 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99918 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00045 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47149 * 90.00294 * 12 10 8 14 14 H 1.48503 * 109.47172 * 210.00537 * 12 10 8 15 15 H 1.48498 * 109.47035 * 330.00392 * 12 10 8 16 16 C 1.53034 * 109.52751 * 298.62883 * 5 4 2 17 17 C 1.53194 * 109.31138 * 61.38280 * 16 5 4 18 18 N 1.46919 * 109.70710 * 239.63930 * 2 1 3 19 19 C 1.34778 * 120.62861 * 6.55830 * 18 2 1 20 20 O 1.21573 * 120.00206 * 6.24468 * 19 18 2 21 21 C 1.47686 * 119.99771 * 186.24869 * 19 18 2 22 22 C 1.39911 * 120.39240 * 33.45169 * 21 19 18 23 23 N 1.31442 * 121.13754 * 179.72787 * 22 21 19 24 24 C 1.32474 * 121.80962 * 0.57956 * 23 22 21 25 25 N 1.37880 * 133.44562 * 179.71271 * 24 23 22 26 26 H 0.97002 * 126.25576 * 359.95674 * 25 24 23 27 27 C 1.36516 * 107.49401 * 179.97438 * 25 24 23 28 28 O 1.35263 * 125.02265 * 179.97438 * 27 25 24 29 29 N 1.30725 * 109.95611 * 0.02562 * 27 25 24 30 30 C 1.35887 * 109.39557 * 359.97438 * 29 27 25 31 31 C 1.39416 * 133.63224 * 180.02562 * 30 29 27 32 32 H 1.09004 * 109.47353 * 292.55943 * 1 2 3 33 33 H 1.08996 * 109.47295 * 52.56505 * 1 2 3 34 34 H 1.08999 * 109.47076 * 172.56278 * 1 2 3 35 35 H 1.09001 * 109.50022 * 54.61653 * 4 2 1 36 36 H 1.09003 * 109.50239 * 294.52020 * 4 2 1 37 37 H 0.96997 * 120.00129 * 25.02950 * 7 5 4 38 38 H 0.97004 * 120.00099 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.50006 * 181.31742 * 16 5 4 40 40 H 1.08999 * 109.50156 * 301.41940 * 16 5 4 41 41 H 1.09001 * 109.58834 * 185.56239 * 17 16 5 42 42 H 1.09008 * 109.71323 * 65.20263 * 17 16 5 43 43 H 1.08002 * 119.42841 * 359.97438 * 22 21 19 44 44 H 0.96703 * 114.00264 * 90.00199 * 28 27 25 45 45 H 1.08001 * 120.96241 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1730 6 1 4.0045 0.1529 1.1021 7 7 4.0654 -1.5094 2.3792 8 6 5.3487 -1.2891 2.8031 9 1 5.9955 -0.6278 2.2457 10 6 5.8203 -1.9207 3.9457 11 7 7.0540 -1.7093 4.3527 12 14 4.7042 -3.0706 4.9055 13 1 4.8497 -4.4526 4.3823 14 1 5.0818 -3.0426 6.3415 15 1 3.2938 -2.6306 4.7559 16 6 3.9601 -1.6610 -0.0596 17 6 3.4685 -0.9437 -1.3208 18 7 2.0254 -0.6991 -1.1935 19 6 1.1723 -1.1079 -2.1534 20 8 -0.0026 -0.8011 -2.0935 21 6 1.6647 -1.9287 -3.2782 22 6 2.7038 -2.8451 -3.0839 23 7 3.1499 -3.5868 -4.0732 24 6 2.6483 -3.4949 -5.2959 25 7 2.9275 -4.1333 -6.4857 26 1 3.6020 -4.8162 -6.6258 27 6 2.0816 -3.6283 -7.4307 28 8 2.0524 -4.0077 -8.7287 29 7 1.3046 -2.7231 -6.8960 30 6 1.6044 -2.5932 -5.5770 31 6 1.1021 -1.7947 -4.5505 32 1 -0.3634 0.3943 0.9491 33 1 -0.3634 0.6246 -0.8160 34 1 -0.3633 -1.0190 -0.1330 35 1 1.6049 -1.7245 1.2923 36 1 1.7637 -0.1653 2.1373 37 1 3.4858 -2.1065 2.8776 38 1 7.3835 -2.1503 5.1514 39 1 5.0446 -1.7628 -0.0986 40 1 3.5033 -2.6489 -0.0014 41 1 3.6576 -1.5685 -2.1938 42 1 3.9918 0.0062 -1.4312 43 1 3.1444 -2.9478 -2.1032 44 1 1.4516 -4.7434 -8.9101 45 1 0.3018 -1.0929 -4.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044654418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:40 Heat of formation + Delta-G solvation = 67.571852 kcal Electronic energy + Delta-G solvation = -30185.856130 eV Core-core repulsion = 26013.710620 eV Total energy + Delta-G solvation = -4172.145510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.87205 -40.85408 -39.07940 -37.63202 -37.36059 -34.74931 -34.20986 -33.16252 -32.00793 -31.56511 -29.94297 -29.55183 -27.31042 -24.96446 -24.43531 -23.88612 -22.73276 -22.32688 -21.82445 -20.36151 -19.79744 -19.56991 -18.72079 -17.90233 -17.50496 -16.98499 -16.74626 -16.10183 -15.94459 -15.19644 -14.96550 -14.69899 -14.48018 -14.16439 -14.07423 -13.71228 -13.60540 -13.30320 -13.06129 -12.81244 -12.63694 -12.58660 -12.28296 -12.10545 -11.90726 -11.66690 -11.48841 -11.36499 -11.06033 -10.96518 -10.88596 -10.55409 -10.33874 -9.97619 -9.83767 -9.63428 -9.37270 -9.13820 -9.00867 -8.84401 -8.54829 -7.33309 -5.81483 -3.17700 0.23762 0.44795 1.58733 2.05430 2.59544 2.76870 3.12600 3.34716 3.37878 3.41265 3.43207 3.79164 4.15723 4.30540 4.44737 4.45513 4.55260 4.78670 4.93147 4.93652 5.09971 5.20538 5.25477 5.37150 5.47524 5.51617 5.54418 5.59433 5.71377 5.75437 5.86023 5.94048 5.98798 6.01808 6.03732 6.20211 6.28003 6.33324 6.39014 6.61891 6.74502 6.88250 6.89060 7.05359 7.34582 7.37599 7.93831 8.07777 8.37456 9.15571 9.88293 10.07621 11.36586 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.002633 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.634021 B =10632.986312 C =11901.641028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.155 4.155 17 C 0.082 3.918 18 N -0.595 5.595 19 C 0.569 3.431 20 O -0.528 6.528 21 C -0.190 4.190 22 C 0.167 3.833 23 N -0.479 5.479 24 C 0.267 3.733 25 N -0.586 5.586 26 H 0.430 0.570 27 C 0.465 3.535 28 O -0.436 6.436 29 N -0.468 5.468 30 C 0.004 3.996 31 C 0.042 3.958 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.190 0.810 44 H 0.414 0.586 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 -3.710 -22.805 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.196 4.196 17 C -0.041 4.041 18 N -0.328 5.328 19 C 0.356 3.644 20 O -0.406 6.406 21 C -0.198 4.198 22 C 0.000 4.000 23 N -0.192 5.192 24 C 0.031 3.969 25 N -0.214 5.214 26 H 0.271 0.729 27 C 0.159 3.841 28 O -0.238 6.238 29 N -0.200 5.200 30 C -0.116 4.116 31 C 0.014 3.986 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.206 0.794 44 H 0.273 0.727 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.806 -3.155 -23.259 26.274 hybrid contribution -0.368 -1.726 0.792 1.934 sum -12.174 -4.881 -22.467 26.015 Atomic orbital electron populations 1.22190 0.92728 1.03688 1.00875 1.21316 0.95463 0.95338 0.83206 0.90622 1.22364 0.97507 1.01096 0.96910 1.20122 0.90771 0.95430 0.86236 0.92397 1.42787 1.13230 1.55011 1.27881 1.19053 0.87491 1.23554 1.07367 0.89141 1.24677 0.96075 1.00100 0.98197 1.69700 1.15143 1.47081 1.26090 0.86565 0.80530 0.81573 0.79926 1.21125 1.21791 1.20286 1.22701 1.02547 0.99744 0.94569 1.22522 0.79439 1.01914 1.00256 1.48096 1.07516 1.57088 1.20071 1.17803 0.85669 0.79437 0.81467 1.90844 1.16684 1.56857 1.76254 1.20794 1.01068 1.02743 0.95217 1.23367 0.90698 0.88560 0.97420 1.66502 1.30034 1.25430 0.97208 1.18766 0.95620 0.95321 0.87234 1.43037 1.34915 1.36691 1.06718 0.72919 1.20162 0.88900 0.92334 0.82690 1.84864 1.67611 1.56299 1.15028 1.70736 1.24327 1.18470 1.06436 1.19298 0.99338 1.01097 0.91825 1.20748 0.95606 0.94085 0.88145 0.93511 0.90725 0.91643 0.91745 0.90332 0.80605 0.93034 0.89699 0.92025 0.88885 0.90695 0.79380 0.72653 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.62 37.16 0.28 -1.46 16 2 C 0.15 1.90 3.48 -67.60 -0.24 1.67 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.01 4.84 -26.61 -0.13 -2.14 16 5 C 0.18 3.13 2.73 -67.89 -0.19 2.94 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.38 4.92 -53.39 -0.26 -16.65 16 8 C -0.24 -6.51 10.41 -15.06 -0.16 -6.67 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 12 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 16 C -0.15 -2.23 5.32 -26.61 -0.14 -2.38 16 17 C 0.08 0.94 5.53 -3.71 -0.02 0.92 16 18 N -0.60 -7.33 2.97 -166.39 -0.49 -7.82 16 19 C 0.57 7.33 7.21 -12.40 -0.09 7.25 16 20 O -0.53 -7.88 12.44 5.30 0.07 -7.81 16 21 C -0.19 -2.19 5.45 -104.85 -0.57 -2.76 16 22 C 0.17 1.85 8.56 -17.09 -0.15 1.70 16 23 N -0.48 -5.55 10.36 -11.92 -0.12 -5.67 16 24 C 0.27 2.92 8.45 -155.41 -1.31 1.60 16 25 N -0.59 -4.55 6.23 -13.35 -0.08 -4.64 16 26 H 0.43 2.05 8.96 -40.82 -0.37 1.68 16 27 C 0.46 3.83 9.39 -88.83 -0.83 2.99 16 28 O -0.44 -2.17 13.63 -17.48 -0.24 -2.41 16 29 N -0.47 -5.26 11.32 -12.21 -0.14 -5.39 16 30 C 0.00 0.05 7.22 -84.67 -0.61 -0.56 16 31 C 0.04 0.47 9.78 -38.58 -0.38 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.00 6.68 -51.93 -0.35 0.65 16 34 H 0.06 0.92 6.83 -51.93 -0.35 0.56 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 0.88 7.63 -51.93 -0.40 0.49 16 41 H 0.09 0.95 3.52 -51.93 -0.18 0.77 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.19 1.94 4.98 -52.49 -0.26 1.68 16 44 H 0.41 -0.26 9.06 45.56 0.41 0.15 16 45 H 0.16 1.64 8.03 -52.49 -0.42 1.21 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -34.77 360.45 -9.10 -43.87 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.69 Total: 8.77 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -4.62 Total: 3.25 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -0.33 Total: -67.88 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.17 Total: -10.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.77 -9.10 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044654418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.446 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds