Wall clock time and date at job start Wed Apr 1 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58448 * 2 1 4 4 C 1.53191 * 109.58454 * 120.27790 * 2 1 3 5 5 C 1.53046 * 109.31254 * 174.56528 * 4 2 1 6 6 H 1.08997 * 109.45728 * 58.64520 * 5 4 2 7 7 N 1.46497 * 109.45929 * 178.61433 * 5 4 2 8 8 C 1.36933 * 120.00021 * 205.03014 * 7 5 4 9 9 H 1.08001 * 120.00010 * 359.72273 * 8 7 5 10 10 C 1.38812 * 120.00246 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99918 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00045 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47149 * 90.00294 * 12 10 8 14 14 H 1.48503 * 109.47172 * 210.00537 * 12 10 8 15 15 H 1.48498 * 109.47035 * 330.00392 * 12 10 8 16 16 C 1.53034 * 109.52751 * 298.62883 * 5 4 2 17 17 C 1.53194 * 109.31138 * 61.38280 * 16 5 4 18 18 N 1.46919 * 109.70710 * 239.63930 * 2 1 3 19 19 C 1.34778 * 120.62861 * 6.55830 * 18 2 1 20 20 O 1.21573 * 120.00206 * 6.24468 * 19 18 2 21 21 C 1.47686 * 119.99771 * 186.24869 * 19 18 2 22 22 C 1.39911 * 120.39240 * 33.45169 * 21 19 18 23 23 N 1.31442 * 121.13754 * 179.72787 * 22 21 19 24 24 C 1.32474 * 121.80962 * 0.57956 * 23 22 21 25 25 N 1.37880 * 133.44562 * 179.71271 * 24 23 22 26 26 H 0.97002 * 126.25576 * 359.95674 * 25 24 23 27 27 C 1.36516 * 107.49401 * 179.97438 * 25 24 23 28 28 O 1.35263 * 125.02265 * 179.97438 * 27 25 24 29 29 N 1.30725 * 109.95611 * 0.02562 * 27 25 24 30 30 C 1.35887 * 109.39557 * 359.97438 * 29 27 25 31 31 C 1.39416 * 133.63224 * 180.02562 * 30 29 27 32 32 H 1.09004 * 109.47353 * 292.55943 * 1 2 3 33 33 H 1.08996 * 109.47295 * 52.56505 * 1 2 3 34 34 H 1.08999 * 109.47076 * 172.56278 * 1 2 3 35 35 H 1.09001 * 109.50022 * 54.61653 * 4 2 1 36 36 H 1.09003 * 109.50239 * 294.52020 * 4 2 1 37 37 H 0.96997 * 120.00129 * 25.02950 * 7 5 4 38 38 H 0.97004 * 120.00099 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.50006 * 181.31742 * 16 5 4 40 40 H 1.08999 * 109.50156 * 301.41940 * 16 5 4 41 41 H 1.09001 * 109.58834 * 185.56239 * 17 16 5 42 42 H 1.09008 * 109.71323 * 65.20263 * 17 16 5 43 43 H 1.08002 * 119.42841 * 359.97438 * 22 21 19 44 44 H 0.96703 * 114.00264 * 90.00199 * 28 27 25 45 45 H 1.08001 * 120.96241 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1730 6 1 4.0045 0.1529 1.1021 7 7 4.0654 -1.5094 2.3792 8 6 5.3487 -1.2891 2.8031 9 1 5.9955 -0.6278 2.2457 10 6 5.8203 -1.9207 3.9457 11 7 7.0540 -1.7093 4.3527 12 14 4.7042 -3.0706 4.9055 13 1 4.8497 -4.4526 4.3823 14 1 5.0818 -3.0426 6.3415 15 1 3.2938 -2.6306 4.7559 16 6 3.9601 -1.6610 -0.0596 17 6 3.4685 -0.9437 -1.3208 18 7 2.0254 -0.6991 -1.1935 19 6 1.1723 -1.1079 -2.1534 20 8 -0.0026 -0.8011 -2.0935 21 6 1.6647 -1.9287 -3.2782 22 6 2.7038 -2.8451 -3.0839 23 7 3.1499 -3.5868 -4.0732 24 6 2.6483 -3.4949 -5.2959 25 7 2.9275 -4.1333 -6.4857 26 1 3.6020 -4.8162 -6.6258 27 6 2.0816 -3.6283 -7.4307 28 8 2.0524 -4.0077 -8.7287 29 7 1.3046 -2.7231 -6.8960 30 6 1.6044 -2.5932 -5.5770 31 6 1.1021 -1.7947 -4.5505 32 1 -0.3634 0.3943 0.9491 33 1 -0.3634 0.6246 -0.8160 34 1 -0.3633 -1.0190 -0.1330 35 1 1.6049 -1.7245 1.2923 36 1 1.7637 -0.1653 2.1373 37 1 3.4858 -2.1065 2.8776 38 1 7.3835 -2.1503 5.1514 39 1 5.0446 -1.7628 -0.0986 40 1 3.5033 -2.6489 -0.0014 41 1 3.6576 -1.5685 -2.1938 42 1 3.9918 0.0062 -1.4312 43 1 3.1444 -2.9478 -2.1032 44 1 1.4516 -4.7434 -8.9101 45 1 0.3018 -1.0929 -4.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044654418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:39 Heat of formation + Delta-G solvation = 38.965989 kcal Electronic energy + Delta-G solvation = -30187.096573 eV Core-core repulsion = 26013.710620 eV Total energy + Delta-G solvation = -4173.385953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.61849 -41.84866 -39.84366 -38.79120 -38.00257 -36.29993 -35.00433 -34.20817 -33.77087 -32.42221 -31.50194 -30.44064 -28.50250 -26.09310 -25.45421 -25.01590 -24.08049 -23.10754 -22.83977 -21.70066 -20.67554 -20.39886 -19.64469 -19.38066 -18.57993 -17.79713 -17.59683 -17.08275 -16.77962 -16.70649 -16.00069 -15.89673 -15.61590 -15.45048 -15.08991 -14.84969 -14.78314 -14.49916 -14.26464 -13.99114 -13.80350 -13.53494 -13.39463 -13.16978 -13.06557 -12.91976 -12.61547 -12.53488 -12.44218 -12.15931 -12.03607 -11.97823 -11.87042 -11.73916 -11.34203 -10.89983 -10.71722 -10.23088 -10.10136 -9.70976 -9.56328 -9.26111 -7.97320 -5.29940 -0.52941 -0.40495 0.94648 1.34551 1.41889 1.43709 1.51111 1.63699 1.81579 2.42848 2.52605 2.54624 3.06592 3.32331 3.34937 3.47035 3.52711 3.61159 3.75044 3.83790 3.99223 4.03215 4.13824 4.27512 4.36585 4.49449 4.57130 4.60988 4.64152 4.72263 4.77642 4.81274 4.89306 5.03740 5.09682 5.14720 5.20393 5.31526 5.44884 5.52330 5.65182 5.71378 5.83643 6.26832 6.33136 6.35562 6.41368 6.62056 7.06937 7.13415 7.90261 8.08121 9.24049 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.002633 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.634021 B =10632.986312 C =11901.641028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.086 0.914 4 C -0.129 4.129 5 C 0.176 3.824 6 H 0.049 0.951 7 N -0.751 5.751 8 C -0.220 4.220 9 H 0.062 0.938 10 C -0.066 4.066 11 N -0.985 5.985 12 Si 0.950 3.050 13 H -0.281 1.281 14 H -0.302 1.302 15 H -0.251 1.251 16 C -0.145 4.145 17 C 0.092 3.908 18 N -0.594 5.594 19 C 0.572 3.428 20 O -0.550 6.550 21 C -0.192 4.192 22 C 0.165 3.835 23 N -0.487 5.487 24 C 0.257 3.743 25 N -0.573 5.573 26 H 0.445 0.555 27 C 0.488 3.512 28 O -0.432 6.432 29 N -0.504 5.504 30 C -0.006 4.006 31 C 0.038 3.962 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.364 0.636 38 H 0.255 0.745 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.196 0.804 44 H 0.441 0.559 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 -4.683 -24.588 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.104 0.896 4 C -0.167 4.167 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.394 5.394 8 C -0.351 4.351 9 H 0.079 0.921 10 C -0.257 4.257 11 N -0.636 5.636 12 Si 0.778 3.222 13 H -0.208 1.208 14 H -0.229 1.229 15 H -0.176 1.176 16 C -0.186 4.186 17 C -0.031 4.031 18 N -0.326 5.326 19 C 0.360 3.640 20 O -0.429 6.429 21 C -0.200 4.200 22 C -0.003 4.003 23 N -0.200 5.200 24 C 0.020 3.980 25 N -0.201 5.201 26 H 0.288 0.712 27 C 0.182 3.818 28 O -0.238 6.238 29 N -0.237 5.237 30 C -0.125 4.125 31 C 0.010 3.990 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.197 0.803 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.103 0.897 43 H 0.212 0.788 44 H 0.305 0.695 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.399 -4.157 -25.119 28.771 hybrid contribution 0.109 -1.409 1.101 1.791 sum -13.289 -5.565 -24.018 28.008 Atomic orbital electron populations 1.22055 0.92365 1.02736 1.01296 1.21291 0.95601 0.95615 0.82538 0.89588 1.22231 0.95121 1.01467 0.97928 1.20377 0.92546 0.94877 0.85345 0.93293 1.42821 1.11563 1.55455 1.29522 1.19020 0.88788 1.21193 1.06104 0.92051 1.25444 0.97567 1.02749 0.99927 1.69877 1.17480 1.49293 1.26951 0.85478 0.79807 0.79376 0.77515 1.20763 1.22885 1.17596 1.22485 1.01560 0.99851 0.94686 1.22455 0.78969 1.02411 0.99250 1.48091 1.07674 1.56899 1.19936 1.17932 0.85305 0.79103 0.81613 1.90839 1.17567 1.57690 1.76820 1.20616 1.01556 1.03013 0.94805 1.23391 0.90673 0.88557 0.97630 1.66522 1.30256 1.25620 0.97560 1.18917 0.95686 0.95654 0.87734 1.43006 1.35020 1.36509 1.05613 0.71171 1.20220 0.87411 0.90874 0.83338 1.84848 1.68523 1.57635 1.12827 1.70729 1.26126 1.20389 1.06436 1.19430 0.99597 1.01291 0.92227 1.20803 0.95682 0.94248 0.88233 0.92201 0.91411 0.92986 0.91656 0.90221 0.80321 0.93582 0.91364 0.91572 0.87150 0.89725 0.78805 0.69478 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 7.62 71.98 0.55 -2.47 16 2 C 0.15 3.59 3.48 44.98 0.16 3.75 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.46 4.84 30.67 0.15 -3.31 16 5 C 0.18 5.81 2.73 45.02 0.12 5.93 16 6 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 7 N -0.75 -32.24 4.92 -322.82 -1.59 -33.83 16 8 C -0.22 -11.81 10.41 84.03 0.87 -10.93 16 9 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 10 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 11 N -0.98 -61.81 13.97 21.65 0.30 -61.51 16 12 Si 0.95 44.38 27.74 68.60 1.90 46.28 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 15 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 16 C -0.15 -4.03 5.32 30.67 0.16 -3.86 16 17 C 0.09 1.96 5.53 86.36 0.48 2.43 16 18 N -0.59 -13.64 2.97 -798.59 -2.37 -16.01 16 19 C 0.57 14.01 7.21 86.74 0.63 14.64 16 20 O -0.55 -15.86 12.44 -3.95 -0.05 -15.91 16 21 C -0.19 -4.20 5.45 -20.01 -0.11 -4.31 16 22 C 0.16 3.41 8.56 85.16 0.73 4.14 16 23 N -0.49 -10.52 10.36 -191.61 -1.99 -12.50 16 24 C 0.26 5.21 8.45 133.83 1.13 6.34 16 25 N -0.57 -7.61 6.23 -306.99 -1.91 -9.52 16 26 H 0.44 3.09 8.96 -92.71 -0.83 2.26 16 27 C 0.49 6.90 9.39 179.72 1.69 8.59 16 28 O -0.43 -3.00 13.63 -85.47 -1.16 -4.16 16 29 N -0.50 -10.57 11.32 -306.40 -3.47 -14.04 16 30 C -0.01 -0.13 7.22 39.42 0.28 0.16 16 31 C 0.04 0.83 9.78 22.92 0.22 1.05 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.72 6.68 -2.39 -0.02 1.71 16 34 H 0.05 1.38 6.83 -2.39 -0.02 1.36 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.36 15.25 5.66 -92.71 -0.52 14.73 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 1.79 7.63 -2.39 -0.02 1.77 16 41 H 0.11 2.06 3.52 -2.39 -0.01 2.06 16 42 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.20 3.67 4.98 -2.91 -0.01 3.65 16 44 H 0.44 -2.06 9.06 -74.06 -0.67 -2.73 16 45 H 0.16 3.26 8.03 -2.91 -0.02 3.24 16 Total: -1.00 -75.72 360.45 -3.80 -79.51 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -0.99 Total: 22.83 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 7.53 Total: 18.86 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -11.03 Total: -147.42 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.21 Total: -20.07 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -75.72 -3.80 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044654418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.480 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds