Wall clock time and date at job start Wed Apr 1 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.69804 * 2 1 4 4 C 1.53190 * 109.58652 * 120.34927 * 2 1 3 5 5 C 1.53043 * 109.31548 * 174.42714 * 4 2 1 6 6 H 1.08995 * 109.45583 * 58.65441 * 5 4 2 7 7 N 1.46495 * 109.46215 * 178.61635 * 5 4 2 8 8 C 1.36935 * 119.99683 * 204.99811 * 7 5 4 9 9 H 1.07998 * 120.00479 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99957 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99725 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00320 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46946 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47115 * 119.99751 * 12 10 8 15 15 H 1.48500 * 109.46893 * 240.00083 * 12 10 8 16 16 C 1.53046 * 109.53453 * 298.63565 * 5 4 2 17 17 C 1.53192 * 109.31168 * 61.36195 * 16 5 4 18 18 N 1.46923 * 109.58907 * 239.64309 * 2 1 3 19 19 C 1.34771 * 120.62940 * 6.32544 * 18 2 1 20 20 O 1.21642 * 120.00486 * 351.55370 * 19 18 2 21 21 C 1.47064 * 119.99997 * 171.55747 * 19 18 2 22 22 C 1.35875 * 125.43138 * 153.42061 * 21 19 18 23 23 C 1.41579 * 107.73685 * 179.97438 * 22 21 19 24 24 C 1.40132 * 133.34825 * 179.97438 * 23 22 21 25 25 C 1.36611 * 119.81365 * 179.97438 * 24 23 22 26 26 F 1.35098 * 119.71730 * 180.02562 * 25 24 23 27 27 C 1.39121 * 120.56147 * 359.97438 * 25 24 23 28 28 C 1.37668 * 120.62976 * 0.02562 * 27 25 24 29 29 C 1.39216 * 119.83594 * 0.02562 * 28 27 25 30 30 N 1.37576 * 133.14688 * 180.30285 * 29 28 27 31 31 H 0.97006 * 125.61076 * 359.92117 * 30 29 28 32 32 H 1.09005 * 109.46745 * 177.58799 * 1 2 3 33 33 H 1.08993 * 109.47387 * 297.58821 * 1 2 3 34 34 H 1.08999 * 109.47312 * 57.59347 * 1 2 3 35 35 H 1.09003 * 109.49929 * 294.37645 * 4 2 1 36 36 H 1.09001 * 109.49851 * 54.44058 * 4 2 1 37 37 H 0.96998 * 120.00285 * 24.99774 * 7 5 4 38 38 H 0.97003 * 119.99746 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.49294 * 181.31249 * 16 5 4 40 40 H 1.08998 * 109.49752 * 301.41176 * 16 5 4 41 41 H 1.08997 * 109.58796 * 185.57824 * 17 16 5 42 42 H 1.09003 * 109.58641 * 65.15253 * 17 16 5 43 43 H 1.08000 * 126.12978 * 359.95645 * 22 21 19 44 44 H 1.08003 * 120.09312 * 359.97438 * 24 23 22 45 45 H 1.08008 * 119.68582 * 180.02562 * 27 25 24 46 46 H 1.07993 * 120.07863 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1703 6 1 4.0060 0.1476 1.0995 7 7 4.0652 -1.5154 2.3756 8 6 5.3497 -1.2983 2.7976 9 1 5.9957 -0.6346 2.2422 10 6 5.8211 -1.9305 3.9400 11 7 5.0333 -2.7383 4.6177 12 14 7.5731 -1.6338 4.5162 13 1 8.2466 -0.6910 3.5874 14 1 7.5531 -1.0536 5.8830 15 1 8.3124 -2.9216 4.5358 16 6 3.9570 -1.6656 -0.0633 17 6 3.4651 -0.9470 -1.3235 18 7 2.0226 -0.6996 -1.1944 19 6 1.1669 -1.1115 -2.1506 20 8 -0.0331 -1.0451 -1.9628 21 6 1.6839 -1.6415 -3.4213 22 6 1.0388 -2.5254 -4.2268 23 6 1.8711 -2.7778 -5.3440 24 6 1.7372 -3.5875 -6.4798 25 6 2.7372 -3.6237 -7.4099 26 9 2.6058 -4.4045 -8.5044 27 6 3.8892 -2.8624 -7.2399 28 6 4.0424 -2.0599 -6.1319 29 6 3.0372 -2.0076 -5.1702 30 7 2.9000 -1.3152 -3.9892 31 1 3.5510 -0.7004 -3.6160 32 1 -0.3633 -1.0268 -0.0433 33 1 -0.3634 0.4759 0.9107 34 1 -0.3634 0.5507 -0.8676 35 1 1.7660 -0.1666 2.1369 36 1 1.6026 -1.7250 1.2918 37 1 3.4849 -2.1113 2.8747 38 1 5.3626 -3.1798 5.4162 39 1 5.0413 -1.7694 -0.1034 40 1 3.4985 -2.6527 -0.0050 41 1 3.6519 -1.5718 -2.1969 42 1 3.9903 0.0021 -1.4316 43 1 0.0657 -2.9580 -4.0470 44 1 0.8459 -4.1812 -6.6196 45 1 4.6708 -2.9015 -7.9843 46 1 4.9402 -1.4723 -6.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044704673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:13 Heat of formation + Delta-G solvation = -2.024917 kcal Electronic energy + Delta-G solvation = -29903.261758 eV Core-core repulsion = 25708.178344 eV Total energy + Delta-G solvation = -4195.083414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.78640 -42.87186 -41.25798 -38.82334 -37.66641 -36.25819 -34.07438 -33.70481 -33.30211 -31.17719 -30.20899 -30.04139 -28.38022 -26.16342 -25.37331 -24.60183 -23.15920 -23.09482 -22.04790 -21.51013 -20.69675 -19.21520 -18.69644 -18.56873 -17.90176 -17.10834 -16.83323 -16.72109 -16.69736 -16.47584 -15.81258 -15.64892 -15.46344 -15.12659 -15.00670 -14.93050 -14.71142 -14.56271 -14.19769 -14.07323 -13.87291 -13.61527 -13.49925 -13.35883 -13.11169 -12.93114 -12.77869 -12.65233 -12.23673 -12.12085 -12.07913 -12.00550 -11.94956 -11.71498 -11.39155 -11.03852 -10.90834 -10.41822 -9.74777 -9.23649 -9.02249 -8.88320 -7.93834 -5.22790 -0.37478 0.36033 0.96376 1.48346 1.48473 1.58242 1.65400 1.79795 2.23953 2.56269 2.66883 3.19753 3.39606 3.42944 3.59071 3.71125 3.75641 3.92340 3.96041 4.02418 4.09604 4.16915 4.26848 4.29581 4.32355 4.46968 4.56318 4.60676 4.65023 4.68282 4.80871 4.83678 4.94946 4.96713 5.02344 5.12081 5.16704 5.20296 5.21055 5.38068 5.46542 5.47480 5.51424 5.53444 5.63403 5.94537 6.23231 6.27834 6.34583 6.94543 7.33775 8.09356 8.31737 9.30062 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.002565 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.291527 B =10914.857566 C =12490.113258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.097 0.903 4 C -0.126 4.126 5 C 0.174 3.826 6 H 0.056 0.944 7 N -0.738 5.738 8 C -0.232 4.232 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.297 1.297 15 H -0.298 1.298 16 C -0.139 4.139 17 C 0.099 3.901 18 N -0.598 5.598 19 C 0.580 3.420 20 O -0.541 6.541 21 C 0.024 3.976 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.109 4.109 25 C 0.058 3.942 26 F -0.150 7.150 27 C -0.120 4.120 28 C -0.091 4.091 29 C 0.094 3.906 30 N -0.562 5.562 31 H 0.435 0.565 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.369 0.631 38 H 0.249 0.751 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.165 0.835 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 5.167 -24.644 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.115 0.885 4 C -0.165 4.165 5 C 0.066 3.934 6 H 0.073 0.927 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.100 0.900 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.185 1.185 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.180 4.180 17 C -0.024 4.024 18 N -0.330 5.330 19 C 0.369 3.631 20 O -0.420 6.420 21 C -0.086 4.086 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.128 4.128 25 C 0.038 3.962 26 F -0.129 7.129 27 C -0.140 4.140 28 C -0.111 4.111 29 C -0.017 4.017 30 N -0.171 5.171 31 H 0.279 0.721 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.174 0.826 44 H 0.162 0.838 45 H 0.183 0.817 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.106 5.419 -24.433 25.361 hybrid contribution 0.766 -0.609 1.127 1.493 sum -3.340 4.810 -23.306 24.030 Atomic orbital electron populations 1.22095 0.92556 1.02647 1.01222 1.21350 0.95562 0.95568 0.82411 0.88496 1.22181 0.95861 1.00520 0.97931 1.20418 0.92230 0.94885 0.85896 0.92650 1.42680 1.12168 1.54550 1.28318 1.19669 0.90009 1.20833 1.05833 0.89997 1.25565 1.01981 1.00582 0.99042 1.69837 1.37135 1.35424 1.19993 0.85117 0.80182 0.77009 0.77737 1.18487 1.22503 1.22535 1.22437 1.01208 0.99096 0.95280 1.22261 0.79040 1.02069 0.99031 1.48181 1.07901 1.56689 1.20242 1.17480 0.85800 0.77409 0.82452 1.90900 1.15735 1.55311 1.80009 1.20096 0.88297 1.03900 0.96326 1.20970 1.00712 1.00210 0.93311 1.17971 0.95624 1.01446 0.96550 1.20411 0.99775 0.99961 0.92658 1.17253 0.97107 0.96156 0.85674 1.91476 1.96319 1.73086 1.51990 1.21161 0.97182 0.96447 0.99258 1.20270 0.98328 1.00947 0.91531 1.18642 0.97329 0.96495 0.89222 1.42445 1.16691 1.39608 1.18375 0.72090 0.92865 0.92275 0.91659 0.90799 0.93408 0.79940 0.94236 0.91139 0.94169 0.88357 0.87919 0.82616 0.83786 0.81743 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 7.59 71.98 0.55 -2.73 16 2 C 0.15 3.81 3.49 44.97 0.16 3.96 16 3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.13 -3.88 4.84 30.67 0.15 -3.73 16 5 C 0.17 6.09 2.73 45.02 0.12 6.21 16 6 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 7 N -0.74 -35.14 5.12 -322.82 -1.65 -36.80 16 8 C -0.23 -12.09 9.93 84.03 0.83 -11.26 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 11 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 12 Si 0.97 44.60 29.55 68.60 2.03 46.63 16 13 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 16 C -0.14 -4.17 5.66 30.67 0.17 -4.00 16 17 C 0.10 2.00 5.22 86.36 0.45 2.45 16 18 N -0.60 -14.02 2.97 -799.30 -2.38 -16.39 16 19 C 0.58 14.84 7.52 86.56 0.65 15.49 16 20 O -0.54 -16.60 12.37 -4.16 -0.05 -16.65 16 21 C 0.02 0.53 6.18 39.92 0.25 0.77 16 22 C -0.13 -2.77 10.63 22.55 0.24 -2.53 16 23 C -0.11 -2.24 6.16 -21.36 -0.13 -2.37 16 24 C -0.11 -2.01 10.03 22.35 0.22 -1.78 16 25 C 0.06 1.01 7.24 22.10 0.16 1.17 16 26 F -0.15 -2.87 17.25 44.97 0.78 -2.09 16 27 C -0.12 -1.56 9.99 22.35 0.22 -1.34 16 28 C -0.09 -1.10 10.07 22.37 0.23 -0.87 16 29 C 0.09 1.58 7.25 39.11 0.28 1.87 16 30 N -0.56 -9.07 4.77 -177.15 -0.84 -9.92 16 31 H 0.43 4.78 6.76 -92.70 -0.63 4.15 16 32 H 0.05 1.60 6.72 -2.38 -0.02 1.58 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.71 6.78 -2.39 -0.02 1.70 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 38 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.70 4.57 -2.39 -0.01 1.69 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -68.11 372.51 2.87 -65.24 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.31 Total: 31.12 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.02 Total: -2.67 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -4.59 Total: -121.57 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.11 2.87 -65.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044704673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.219 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds