Wall clock time and date at job start Wed Apr 1 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.70216 * 2 1 4 4 C 1.53191 * 109.58487 * 239.62915 * 2 1 3 5 5 C 1.53045 * 109.31274 * 185.56387 * 4 2 1 6 6 H 1.09004 * 109.45913 * 301.37315 * 5 4 2 7 7 N 1.46499 * 109.46082 * 181.40446 * 5 4 2 8 8 C 1.36936 * 119.99877 * 154.97531 * 7 5 4 9 9 H 1.07994 * 120.00057 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99701 * 179.97438 * 8 7 5 11 11 N 1.31612 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99716 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47372 * 59.99971 * 12 10 8 14 14 H 1.48497 * 109.47198 * 299.99243 * 12 10 8 15 15 H 1.48501 * 109.46774 * 179.97438 * 12 10 8 16 16 C 1.53035 * 109.52654 * 61.38705 * 5 4 2 17 17 C 1.53191 * 109.31552 * 298.62869 * 16 5 4 18 18 N 1.46924 * 109.58720 * 120.35759 * 2 1 3 19 19 C 1.34786 * 120.62944 * 353.37221 * 18 2 1 20 20 O 1.21555 * 119.99947 * 355.30449 * 19 18 2 21 21 C 1.47846 * 119.99991 * 175.30409 * 19 18 2 22 22 C 1.39718 * 119.44227 * 206.73745 * 21 19 18 23 23 C 1.37000 * 119.59982 * 179.97438 * 22 21 19 24 24 C 1.39898 * 118.36530 * 0.02562 * 23 22 21 25 25 N 1.35419 * 133.68637 * 179.97438 * 24 23 22 26 26 C 1.30931 * 109.57248 * 180.02562 * 25 24 23 27 27 O 1.35179 * 124.99979 * 180.02562 * 26 25 24 28 28 N 1.36387 * 110.00141 * 0.02562 * 26 25 24 29 29 H 0.96999 * 126.32235 * 179.97438 * 28 26 25 30 30 C 1.38251 * 107.36384 * 359.97438 * 28 26 25 31 31 N 1.31768 * 133.71638 * 180.30730 * 30 28 26 32 32 H 1.09000 * 109.47041 * 309.54188 * 1 2 3 33 33 H 1.08997 * 109.47156 * 69.54591 * 1 2 3 34 34 H 1.09006 * 109.47121 * 189.54323 * 1 2 3 35 35 H 1.09003 * 109.48386 * 65.62154 * 4 2 1 36 36 H 1.09001 * 109.51274 * 305.52460 * 4 2 1 37 37 H 0.97000 * 119.99949 * 334.96503 * 7 5 4 38 38 H 0.97005 * 120.00020 * 0.02562 * 11 10 8 39 39 H 1.09003 * 109.49693 * 58.58249 * 16 5 4 40 40 H 1.08996 * 109.49718 * 178.67884 * 16 5 4 41 41 H 1.08996 * 109.59218 * 174.41829 * 17 16 5 42 42 H 1.09001 * 109.58635 * 294.84953 * 17 16 5 43 43 H 1.08004 * 120.19554 * 0.02562 * 22 21 19 44 44 H 1.07997 * 120.81427 * 180.02562 * 23 22 21 45 45 H 0.96698 * 113.99996 * 89.97423 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7297 -1.2452 5 6 3.5675 -0.8480 -1.1701 6 1 4.0060 0.1474 -1.0992 7 7 4.0653 -1.5157 -2.3754 8 6 5.3495 -1.2980 -2.7978 9 1 5.9953 -0.6338 -2.2428 10 6 5.8212 -1.9311 -3.9396 11 7 5.0344 -2.7410 -4.6158 12 14 7.5729 -1.6336 -4.5163 13 1 8.5219 -2.0547 -3.4546 14 1 7.7608 -0.1889 -4.8038 15 1 7.8287 -2.4213 -5.7489 16 6 3.9570 -1.6657 0.0635 17 6 3.4651 -0.9470 1.3237 18 7 2.0226 -0.6996 1.1944 19 6 1.1674 -1.1062 2.1536 20 8 -0.0117 -0.8209 2.0773 21 6 1.6635 -1.8993 3.2985 22 6 0.7937 -2.7713 3.9583 23 6 1.2502 -3.5081 5.0192 24 6 2.5859 -3.3578 5.4072 25 7 3.3448 -3.9123 6.3821 26 6 4.5589 -3.4257 6.3231 27 8 5.5715 -3.7654 7.1516 28 7 4.6515 -2.5255 5.3027 29 1 5.4423 -2.0246 5.0484 30 6 3.4103 -2.4585 4.6976 31 7 2.9292 -1.7740 3.6796 32 1 -0.3633 0.6543 0.7925 33 1 -0.3633 0.3591 -0.9628 34 1 -0.3634 -1.0135 0.1704 35 1 1.7658 -0.1672 -2.1366 36 1 1.6031 -1.7257 -1.2910 37 1 3.4851 -2.1121 -2.8741 38 1 4.1246 -2.8952 -4.3165 39 1 3.4984 -2.6529 0.0052 40 1 5.0412 -1.7695 0.1037 41 1 3.6518 -1.5718 2.1971 42 1 3.9904 0.0020 1.4317 43 1 -0.2320 -2.8644 3.6333 44 1 0.5950 -4.1883 5.5431 45 1 6.0993 -4.5138 6.8413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044716319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:43 Heat of formation + Delta-G solvation = 36.356867 kcal Electronic energy + Delta-G solvation = -30415.206908 eV Core-core repulsion = 26241.707815 eV Total energy + Delta-G solvation = -4173.499093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.60484 -41.82031 -39.90355 -38.84669 -37.94186 -36.51523 -35.11303 -34.00624 -33.74506 -32.48450 -31.06668 -30.38711 -28.34244 -26.07669 -25.60162 -24.73751 -24.46504 -23.12172 -22.92747 -21.88075 -20.82484 -20.38252 -19.37651 -19.09647 -18.57172 -18.17706 -17.46223 -17.12349 -16.87241 -16.38331 -16.24886 -15.99324 -15.71049 -15.45198 -15.29439 -14.90085 -14.82055 -14.52332 -14.27863 -14.06840 -13.58800 -13.41567 -13.26948 -13.24553 -13.09027 -12.80248 -12.63915 -12.49464 -12.42793 -12.22555 -12.07276 -11.90428 -11.79308 -11.65165 -11.21377 -10.96658 -10.65423 -10.17534 -10.01582 -9.71754 -9.56328 -9.10908 -8.38545 -5.32622 -0.80403 0.00882 0.86143 1.20010 1.57669 1.66318 1.67630 1.81160 1.83863 2.39564 2.59797 2.71181 2.99026 3.22363 3.40485 3.54379 3.58807 3.74015 3.80551 3.89076 4.01036 4.04989 4.19547 4.27004 4.40335 4.46840 4.48772 4.53954 4.63947 4.79315 4.85199 4.89241 4.91710 4.94183 5.08194 5.12060 5.19299 5.32094 5.37086 5.40280 5.59718 5.61448 5.68032 6.23327 6.34117 6.37006 6.49278 6.57060 6.99305 7.09111 7.99192 8.12012 9.13300 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.003120 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.107919 B = 8971.688279 C =11122.748241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.148 3.852 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.178 3.822 6 H 0.044 0.956 7 N -0.749 5.749 8 C -0.326 4.326 9 H 0.068 0.932 10 C -0.106 4.106 11 N -0.978 5.978 12 Si 1.127 2.873 13 H -0.277 1.277 14 H -0.277 1.277 15 H -0.295 1.295 16 C -0.136 4.136 17 C 0.089 3.911 18 N -0.583 5.583 19 C 0.571 3.429 20 O -0.541 6.541 21 C 0.103 3.897 22 C -0.116 4.116 23 C -0.019 4.019 24 C 0.026 3.974 25 N -0.509 5.509 26 C 0.496 3.504 27 O -0.434 6.434 28 N -0.575 5.575 29 H 0.443 0.557 30 C 0.226 3.774 31 N -0.448 5.448 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.357 0.643 38 H 0.243 0.757 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 0.124 24.550 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.069 3.931 6 H 0.062 0.938 7 N -0.390 5.390 8 C -0.458 4.458 9 H 0.086 0.914 10 C -0.297 4.297 11 N -0.626 5.626 12 Si 0.951 3.049 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.221 1.221 16 C -0.177 4.177 17 C -0.034 4.034 18 N -0.314 5.314 19 C 0.358 3.642 20 O -0.420 6.420 21 C -0.043 4.043 22 C -0.140 4.140 23 C -0.046 4.046 24 C -0.096 4.096 25 N -0.242 5.242 26 C 0.190 3.810 27 O -0.240 6.240 28 N -0.204 5.204 29 H 0.287 0.713 30 C -0.012 4.012 31 N -0.165 5.165 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.189 0.811 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.092 0.908 43 H 0.189 0.811 44 H 0.197 0.803 45 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -2.715 0.425 24.049 24.205 hybrid contribution -0.529 -0.049 0.121 0.545 sum -3.244 0.376 24.170 24.389 Atomic orbital electron populations 1.22067 0.91855 1.03151 1.01190 1.21352 0.96086 0.95371 0.82646 0.89753 1.22158 0.95411 1.00714 0.97888 1.20367 0.92494 0.94442 0.85764 0.93831 1.42664 1.12242 1.55083 1.29059 1.20365 0.90730 1.25002 1.09688 0.91435 1.27172 1.09483 0.97624 0.95412 1.70989 1.08126 1.40680 1.42793 0.82643 0.70407 0.76145 0.75660 1.20304 1.20361 1.22137 1.22428 1.00453 0.98980 0.95838 1.22841 0.78345 1.02174 1.00052 1.48131 1.08303 1.55507 1.19510 1.17959 0.85286 0.79084 0.81830 1.90848 1.16638 1.57338 1.77139 1.20997 0.88247 0.98087 0.96968 1.21661 1.01999 0.95065 0.95250 1.20763 0.91540 0.97666 0.94625 1.19964 0.96396 0.97973 0.95220 1.70666 1.01658 1.28130 1.23729 1.20321 0.88707 0.88063 0.83901 1.84803 1.41227 1.56519 1.41473 1.43046 1.11177 1.39193 1.27008 0.71345 1.18807 0.87953 0.99096 0.95307 1.66223 1.13843 1.24411 1.11991 0.91242 0.92297 0.92423 0.90808 0.92780 0.81126 0.94660 0.94213 0.92374 0.84045 0.90843 0.81110 0.80269 0.69367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 7.63 71.98 0.55 -2.81 16 2 C 0.15 4.22 3.49 44.98 0.16 4.37 16 3 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -4.10 4.83 30.67 0.15 -3.95 16 5 C 0.18 6.99 2.73 45.02 0.12 7.11 16 6 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 7 N -0.75 -37.66 5.12 -322.81 -1.65 -39.31 16 8 C -0.33 -18.13 9.93 84.03 0.83 -17.30 16 9 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 10 C -0.11 -6.12 5.50 84.86 0.47 -5.66 16 11 N -0.98 -61.41 13.70 21.65 0.30 -61.11 16 12 Si 1.13 51.43 29.92 68.60 2.05 53.49 16 13 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 16 C -0.14 -4.79 5.66 30.67 0.17 -4.61 16 17 C 0.09 2.48 6.07 86.36 0.52 3.00 16 18 N -0.58 -16.55 2.97 -798.39 -2.37 -18.92 16 19 C 0.57 15.97 7.37 86.79 0.64 16.61 16 20 O -0.54 -16.36 12.14 -3.89 -0.05 -16.41 16 21 C 0.10 2.50 6.42 41.90 0.27 2.77 16 22 C -0.12 -2.24 9.54 22.34 0.21 -2.03 16 23 C -0.02 -0.32 10.16 22.38 0.23 -0.10 16 24 C 0.03 0.54 7.24 39.70 0.29 0.83 16 25 N -0.51 -10.18 11.30 -306.04 -3.46 -13.63 16 26 C 0.50 7.27 9.39 179.70 1.69 8.96 16 27 O -0.43 -3.43 13.62 -84.58 -1.15 -4.58 16 28 N -0.58 -8.36 6.25 -307.03 -1.92 -10.27 16 29 H 0.44 4.04 8.96 -92.71 -0.83 3.21 16 30 C 0.23 4.71 8.46 134.00 1.13 5.84 16 31 N -0.45 -10.47 6.44 -181.68 -1.17 -11.64 16 32 H 0.07 1.90 6.86 -2.39 -0.02 1.88 16 33 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 34 H 0.06 1.69 6.61 -2.38 -0.02 1.67 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.36 19.02 6.63 -92.71 -0.61 18.40 16 38 H 0.24 15.27 6.77 -92.70 -0.63 14.64 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.14 3.75 3.91 -57.41 -0.22 3.52 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.17 2.75 7.84 -2.91 -0.02 2.73 16 44 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 45 H 0.44 -1.38 9.06 -74.06 -0.67 -2.05 16 Total: -1.00 -76.61 364.78 -3.10 -79.71 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -1.10 Total: 29.66 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.43 Total: 13.04 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -10.28 Total: -154.90 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.20 Total: -21.00 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.49 kcal Total: -76.61 -3.10 -79.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044716319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.065 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds