Wall clock time and date at job start Wed Apr 1 2020 05:03:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.70336 * 2 1
4 4 C 1.53198 * 109.58517 * 239.64766 * 2 1 3
5 5 C 1.53043 * 109.30777 * 294.84475 * 4 2 1
6 6 H 1.08998 * 109.45914 * 58.64479 * 5 4 2
7 7 N 1.46502 * 109.45746 * 178.61564 * 5 4 2
8 8 C 1.36935 * 120.00178 * 205.03365 * 7 5 4
9 9 H 1.08000 * 119.99834 * 359.97438 * 8 7 5
10 10 C 1.38808 * 120.00310 * 180.02562 * 8 7 5
11 11 N 1.31625 * 119.99816 * 359.97438 * 10 8 7
12 12 Si 1.86797 * 120.00247 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.47057 * 359.97438 * 12 10 8
14 14 H 1.48502 * 109.47279 * 239.99697 * 12 10 8
15 15 H 1.48501 * 109.47481 * 119.99762 * 12 10 8
16 16 C 1.53036 * 109.53175 * 298.62939 * 5 4 2
17 17 C 1.53194 * 109.31137 * 61.38444 * 16 5 4
18 18 N 1.46922 * 108.76889 * 305.34544 * 17 16 5
19 19 C 1.34778 * 120.63346 * 233.63865 * 18 17 16
20 20 O 1.21678 * 119.99708 * 173.75485 * 19 18 17
21 21 C 1.46819 * 119.99846 * 353.76095 * 19 18 17
22 22 C 1.41302 * 126.49866 * 328.14438 * 21 19 18
23 23 N 1.30372 * 108.45928 * 179.85265 * 22 21 19
24 24 N 1.39982 * 109.30772 * 0.41896 * 23 22 21
25 25 C 1.35987 * 108.16726 * 359.73509 * 24 23 22
26 26 N 1.37184 * 120.55166 * 180.02562 * 25 24 23
27 27 H 0.96996 * 119.87476 * 179.97438 * 26 25 24
28 28 C 1.36351 * 120.23886 * 0.03280 * 26 25 24
29 29 C 1.35236 * 119.83715 * 359.96559 * 28 26 25
30 30 C 1.34862 * 131.92968 * 179.75388 * 24 23 22
31 31 O 1.21826 * 120.10755 * 359.95182 * 30 24 23
32 32 H 1.08995 * 109.47283 * 180.35578 * 1 2 3
33 33 H 1.09005 * 109.46714 * 300.35397 * 1 2 3
34 34 H 1.08999 * 109.46974 * 60.35322 * 1 2 3
35 35 H 1.08996 * 109.49379 * 174.89707 * 4 2 1
36 36 H 1.08991 * 109.49859 * 54.80132 * 4 2 1
37 37 H 0.97006 * 119.99972 * 25.02532 * 7 5 4
38 38 H 0.96997 * 119.99771 * 0.02562 * 11 10 8
39 39 H 1.08996 * 109.50055 * 181.32619 * 16 5 4
40 40 H 1.09007 * 109.49672 * 301.42565 * 16 5 4
41 41 H 1.09006 * 109.58243 * 185.56508 * 17 16 5
42 42 H 1.09000 * 109.71087 * 65.20472 * 17 16 5
43 43 H 1.08001 * 125.76962 * 0.03023 * 22 21 19
44 44 H 1.08005 * 120.08236 * 179.97438 * 28 26 25
45 45 H 1.07996 * 120.15748 * 180.02562 * 29 28 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0435 -0.7293 -1.2455
5 6 1.6414 -2.2041 -1.1702
6 1 0.5565 -2.2814 -1.0991
7 7 2.1022 -2.8978 -2.3754
8 6 1.4645 -4.0335 -2.7979
9 1 0.6220 -4.4181 -2.2423
10 6 1.9015 -4.6911 -3.9395
11 7 2.9286 -4.2227 -4.6164
12 14 1.0319 -6.2408 -4.5154
13 1 -0.0834 -6.5566 -3.5871
14 1 1.9950 -7.3711 -4.5339
15 1 0.4931 -6.0272 -5.8826
16 6 2.2802 -2.8462 0.0634
17 6 1.7691 -2.1410 1.3237
18 7 2.0226 -0.6996 1.1945
19 6 2.6945 -0.0318 2.1532
20 8 2.9973 1.1345 1.9838
21 6 3.0611 -0.7117 3.4018
22 6 2.3351 -1.7403 4.0432
23 7 2.9789 -2.0892 5.1218
24 7 4.1360 -1.3107 5.2424
25 6 4.1876 -0.4608 4.1821
26 7 5.2274 0.4239 4.0475
27 1 5.2546 1.0255 3.2871
28 6 6.2234 0.4597 4.9781
29 6 6.1848 -0.3799 6.0376
30 6 5.1132 -1.2867 6.1715
31 8 5.0705 -2.0461 7.1231
32 1 -0.3633 -1.0276 0.0064
33 1 -0.3633 0.5194 0.8869
34 1 -0.3633 0.5083 -0.8931
35 1 3.1296 -0.6503 -1.2914
36 1 1.6075 -0.2784 -2.1368
37 1 2.8591 -2.5525 -2.8743
38 1 3.3803 -3.4181 -4.3171
39 1 2.0127 -3.9021 0.1037
40 1 3.3642 -2.7470 0.0050
41 1 2.2945 -2.5276 2.1971
42 1 0.6989 -2.3154 1.4341
43 1 1.4055 -2.1673 3.6968
44 1 7.0410 1.1569 4.8694
45 1 6.9706 -0.3556 6.7779
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001044766621.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:02
Heat of formation + Delta-G solvation = 61.473849 kcal
Electronic energy + Delta-G solvation = -30569.662444 eV
Core-core repulsion = 26397.252505 eV
Total energy + Delta-G solvation = -4172.409939 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.12395 -40.38569 -39.12739 -38.42055 -37.61790 -34.84683 -33.57482 -32.49393
-31.97519 -31.86210 -29.89091 -29.08532 -27.31288 -24.96716 -24.85197 -24.03077
-23.31669 -22.56271 -21.77386 -20.74068 -19.46733 -18.72436 -18.44466 -17.64426
-17.32526 -17.27127 -16.99278 -16.15629 -15.87101 -15.16640 -14.85156 -14.55005
-14.27610 -14.12150 -14.00170 -13.89738 -13.76311 -13.70742 -13.64697 -13.38621
-13.14051 -12.84458 -12.61758 -11.92355 -11.78390 -11.47520 -11.34114 -10.99269
-10.87172 -10.85399 -10.58303 -10.53062 -10.34004 -10.09624 -10.05400 -9.94643
-9.81664 -9.20880 -8.94149 -8.70484 -8.40864 -7.08673 -6.14289 -3.14913
0.37554 0.56101 1.46753 1.75586 2.06167 2.76480 2.87311 3.09089
3.49101 3.55317 3.64185 3.64413 3.97179 4.23235 4.31955 4.53946
4.62590 4.68050 4.92086 4.97300 4.99413 5.11354 5.11582 5.21281
5.36515 5.49332 5.56547 5.60928 5.64885 5.69933 5.77664 5.83846
5.94533 6.05443 6.16046 6.19571 6.24180 6.33090 6.38344 6.45992
6.51502 6.63657 6.77694 6.92311 7.37295 7.42398 7.76984 8.05797
8.71380 9.17857 10.04313 10.19059 11.34074
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.015395 B = 0.002670 C = 0.002509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.385882 B =10483.027436 C =11157.632270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.144 3.856
3 H 0.097 0.903
4 C -0.134 4.134
5 C 0.184 3.816
6 H 0.054 0.946
7 N -0.736 5.736
8 C -0.331 4.331
9 H 0.066 0.934
10 C -0.045 4.045
11 N -0.944 5.944
12 Si 1.084 2.916
13 H -0.294 1.294
14 H -0.293 1.293
15 H -0.293 1.293
16 C -0.149 4.149
17 C 0.096 3.904
18 N -0.590 5.590
19 C 0.600 3.400
20 O -0.561 6.561
21 C -0.300 4.300
22 C 0.126 3.874
23 N -0.261 5.261
24 N -0.357 5.357
25 C 0.365 3.635
26 N -0.590 5.590
27 H 0.445 0.555
28 C 0.190 3.810
29 C -0.305 4.305
30 C 0.563 3.437
31 O -0.487 6.487
32 H 0.066 0.934
33 H 0.054 0.946
34 H 0.069 0.931
35 H 0.061 0.939
36 H 0.076 0.924
37 H 0.366 0.634
38 H 0.255 0.745
39 H 0.077 0.923
40 H 0.057 0.943
41 H 0.085 0.915
42 H 0.072 0.928
43 H 0.211 0.789
44 H 0.192 0.808
45 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.449 13.421 18.183 22.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.041 3.959
3 H 0.115 0.885
4 C -0.173 4.173
5 C 0.074 3.926
6 H 0.071 0.929
7 N -0.377 5.377
8 C -0.462 4.462
9 H 0.084 0.916
10 C -0.243 4.243
11 N -0.590 5.590
12 Si 0.915 3.085
13 H -0.221 1.221
14 H -0.221 1.221
15 H -0.220 1.220
16 C -0.191 4.191
17 C -0.028 4.028
18 N -0.321 5.321
19 C 0.389 3.611
20 O -0.442 6.442
21 C -0.318 4.318
22 C -0.064 4.064
23 N -0.077 5.077
24 N -0.157 5.157
25 C 0.141 3.859
26 N -0.207 5.207
27 H 0.286 0.714
28 C 0.062 3.938
29 C -0.334 4.334
30 C 0.361 3.639
31 O -0.358 6.358
32 H 0.085 0.915
33 H 0.073 0.927
34 H 0.088 0.912
35 H 0.080 0.920
36 H 0.094 0.906
37 H 0.199 0.801
38 H 0.067 0.933
39 H 0.095 0.905
40 H 0.076 0.924
41 H 0.103 0.897
42 H 0.090 0.910
43 H 0.227 0.773
44 H 0.209 0.791
45 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges 3.457 11.436 18.752 22.235
hybrid contribution 0.310 1.882 0.025 1.908
sum 3.767 13.318 18.777 23.327
Atomic orbital electron populations
1.22157 0.94790 1.02942 1.02084 1.21205 0.94092 0.97040 0.83543
0.88457 1.22230 1.01193 0.97348 0.96557 1.20142 0.96940 0.88851
0.86676 0.92859 1.42459 1.37766 1.30099 1.27416 1.20077 1.12784
1.03090 1.10210 0.91646 1.25753 0.99420 1.04389 0.94696 1.70822
1.22217 1.24429 1.41521 0.83172 0.74689 0.75104 0.75553 1.22074
1.22054 1.22029 1.22648 1.01030 1.00673 0.94708 1.22217 1.01055
0.79249 1.00240 1.47982 1.54826 1.09483 1.19832 1.16876 0.77441
0.85239 0.81590 1.90743 1.56294 1.16507 1.80620 1.19445 0.99490
1.10174 1.02724 1.24448 0.99262 0.92322 0.90402 1.77625 0.94074
1.15547 1.20448 1.48072 1.20528 1.27975 1.19107 1.18669 0.89892
0.87885 0.89420 1.41038 1.18368 1.34702 1.26569 0.71364 1.22436
0.89529 0.95505 0.86364 1.21682 1.03582 1.03480 1.04666 1.17168
0.80482 0.84997 0.81210 1.90928 1.75521 1.40207 1.29140 0.91534
0.92684 0.91232 0.92030 0.90589 0.80103 0.93319 0.90477 0.92439
0.89738 0.90990 0.77263 0.79100 0.80228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.83 9.02 37.16 0.34 -1.49 16
2 C 0.14 1.85 3.22 -67.59 -0.22 1.64 16
3 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16
4 C -0.13 -2.05 5.02 -26.61 -0.13 -2.18 16
5 C 0.18 3.30 2.52 -67.89 -0.17 3.13 16
6 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16
7 N -0.74 -17.35 5.12 -53.39 -0.27 -17.62 16
8 C -0.33 -8.85 9.93 -15.06 -0.15 -9.00 16
9 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16
10 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16
11 N -0.94 -28.58 13.70 55.49 0.76 -27.82 16
12 Si 1.08 25.41 29.92 -169.99 -5.09 20.33 16
13 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16
14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16
17 C 0.10 1.13 4.82 -3.71 -0.02 1.11 16
18 N -0.59 -7.33 2.68 -166.69 -0.45 -7.78 16
19 C 0.60 7.66 7.59 -12.79 -0.10 7.57 16
20 O -0.56 -8.13 15.99 5.21 0.08 -8.05 16
21 C -0.30 -3.47 5.48 -104.86 -0.57 -4.05 16
22 C 0.13 1.37 9.54 -17.01 -0.16 1.21 16
23 N -0.26 -3.54 12.54 30.85 0.39 -3.15 16
24 N -0.36 -4.57 3.79 -13.82 -0.05 -4.63 16
25 C 0.37 3.94 7.86 -153.53 -1.21 2.74 16
26 N -0.59 -4.00 5.39 -11.73 -0.06 -4.07 16
27 H 0.44 2.46 8.46 -40.82 -0.35 2.11 16
28 C 0.19 0.75 11.25 -16.61 -0.19 0.56 16
29 C -0.30 -2.11 9.95 -39.60 -0.39 -2.51 16
30 C 0.56 7.04 7.70 -15.17 -0.12 6.92 16
31 O -0.49 -7.91 17.91 5.08 0.09 -7.82 16
32 H 0.07 0.78 5.72 -51.93 -0.30 0.48 16
33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16
37 H 0.37 9.07 6.63 -40.82 -0.27 8.80 16
38 H 0.26 7.60 6.77 -40.82 -0.28 7.33 16
39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16
40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
41 H 0.08 0.90 4.34 -51.93 -0.23 0.68 16
42 H 0.07 0.74 7.49 -51.93 -0.39 0.35 16
43 H 0.21 1.63 6.66 -52.49 -0.35 1.28 16
44 H 0.19 -0.26 8.06 -52.48 -0.42 -0.68 16
45 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16
LS Contribution 365.71 15.07 5.51 5.51
Total: -1.00 -37.57 365.71 -7.87 -45.44
By element:
Atomic # 1 Polarization: 13.33 SS G_CDS: -5.44 Total: 7.89 kcal
Atomic # 6 Polarization: 5.10 SS G_CDS: -3.34 Total: 1.76 kcal
Atomic # 7 Polarization: -65.38 SS G_CDS: 0.31 Total: -65.07 kcal
Atomic # 8 Polarization: -16.04 SS G_CDS: 0.17 Total: -15.86 kcal
Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.33 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -37.57 -7.87 -45.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044766621.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.911 kcal
(2) G-P(sol) polarization free energy of solvation -37.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds