Wall clock time and date at job start Wed Apr 1 2020 05:03:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.70336 * 2 1
4 4 C 1.53198 * 109.58517 * 239.64766 * 2 1 3
5 5 C 1.53043 * 109.30777 * 294.84475 * 4 2 1
6 6 H 1.08998 * 109.45914 * 58.64479 * 5 4 2
7 7 N 1.46502 * 109.45746 * 178.61564 * 5 4 2
8 8 C 1.36935 * 120.00178 * 205.03365 * 7 5 4
9 9 H 1.08000 * 119.99834 * 359.97438 * 8 7 5
10 10 C 1.38808 * 120.00310 * 180.02562 * 8 7 5
11 11 N 1.31625 * 119.99816 * 359.97438 * 10 8 7
12 12 Si 1.86797 * 120.00247 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.47057 * 359.97438 * 12 10 8
14 14 H 1.48502 * 109.47279 * 239.99697 * 12 10 8
15 15 H 1.48501 * 109.47481 * 119.99762 * 12 10 8
16 16 C 1.53036 * 109.53175 * 298.62939 * 5 4 2
17 17 C 1.53194 * 109.31137 * 61.38444 * 16 5 4
18 18 N 1.46922 * 108.76889 * 305.34544 * 17 16 5
19 19 C 1.34778 * 120.63346 * 233.63865 * 18 17 16
20 20 O 1.21678 * 119.99708 * 173.75485 * 19 18 17
21 21 C 1.46819 * 119.99846 * 353.76095 * 19 18 17
22 22 C 1.41302 * 126.49866 * 328.14438 * 21 19 18
23 23 N 1.30372 * 108.45928 * 179.85265 * 22 21 19
24 24 N 1.39982 * 109.30772 * 0.41896 * 23 22 21
25 25 C 1.35987 * 108.16726 * 359.73509 * 24 23 22
26 26 N 1.37184 * 120.55166 * 180.02562 * 25 24 23
27 27 H 0.96996 * 119.87476 * 179.97438 * 26 25 24
28 28 C 1.36351 * 120.23886 * 0.03280 * 26 25 24
29 29 C 1.35236 * 119.83715 * 359.96559 * 28 26 25
30 30 C 1.34862 * 131.92968 * 179.75388 * 24 23 22
31 31 O 1.21826 * 120.10755 * 359.95182 * 30 24 23
32 32 H 1.08995 * 109.47283 * 180.35578 * 1 2 3
33 33 H 1.09005 * 109.46714 * 300.35397 * 1 2 3
34 34 H 1.08999 * 109.46974 * 60.35322 * 1 2 3
35 35 H 1.08996 * 109.49379 * 174.89707 * 4 2 1
36 36 H 1.08991 * 109.49859 * 54.80132 * 4 2 1
37 37 H 0.97006 * 119.99972 * 25.02532 * 7 5 4
38 38 H 0.96997 * 119.99771 * 0.02562 * 11 10 8
39 39 H 1.08996 * 109.50055 * 181.32619 * 16 5 4
40 40 H 1.09007 * 109.49672 * 301.42565 * 16 5 4
41 41 H 1.09006 * 109.58243 * 185.56508 * 17 16 5
42 42 H 1.09000 * 109.71087 * 65.20472 * 17 16 5
43 43 H 1.08001 * 125.76962 * 0.03023 * 22 21 19
44 44 H 1.08005 * 120.08236 * 179.97438 * 28 26 25
45 45 H 1.07996 * 120.15748 * 180.02562 * 29 28 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0435 -0.7293 -1.2455
5 6 1.6414 -2.2041 -1.1702
6 1 0.5565 -2.2814 -1.0991
7 7 2.1022 -2.8978 -2.3754
8 6 1.4645 -4.0335 -2.7979
9 1 0.6220 -4.4181 -2.2423
10 6 1.9015 -4.6911 -3.9395
11 7 2.9286 -4.2227 -4.6164
12 14 1.0319 -6.2408 -4.5154
13 1 -0.0834 -6.5566 -3.5871
14 1 1.9950 -7.3711 -4.5339
15 1 0.4931 -6.0272 -5.8826
16 6 2.2802 -2.8462 0.0634
17 6 1.7691 -2.1410 1.3237
18 7 2.0226 -0.6996 1.1945
19 6 2.6945 -0.0318 2.1532
20 8 2.9973 1.1345 1.9838
21 6 3.0611 -0.7117 3.4018
22 6 2.3351 -1.7403 4.0432
23 7 2.9789 -2.0892 5.1218
24 7 4.1360 -1.3107 5.2424
25 6 4.1876 -0.4608 4.1821
26 7 5.2274 0.4239 4.0475
27 1 5.2546 1.0255 3.2871
28 6 6.2234 0.4597 4.9781
29 6 6.1848 -0.3799 6.0376
30 6 5.1132 -1.2867 6.1715
31 8 5.0705 -2.0461 7.1231
32 1 -0.3633 -1.0276 0.0064
33 1 -0.3633 0.5194 0.8869
34 1 -0.3633 0.5083 -0.8931
35 1 3.1296 -0.6503 -1.2914
36 1 1.6075 -0.2784 -2.1368
37 1 2.8591 -2.5525 -2.8743
38 1 3.3803 -3.4181 -4.3171
39 1 2.0127 -3.9021 0.1037
40 1 3.3642 -2.7470 0.0050
41 1 2.2945 -2.5276 2.1971
42 1 0.6989 -2.3154 1.4341
43 1 1.4055 -2.1673 3.6968
44 1 7.0410 1.1569 4.8694
45 1 6.9706 -0.3556 6.7779
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001044766621.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:01
Heat of formation + Delta-G solvation = 34.108272 kcal
Electronic energy + Delta-G solvation = -30570.849105 eV
Core-core repulsion = 26397.252505 eV
Total energy + Delta-G solvation = -4173.596599 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.94468 -41.42290 -40.04255 -39.17946 -38.80956 -36.49355 -34.57538 -33.79249
-33.28150 -32.57203 -31.03543 -30.39649 -28.54357 -25.97712 -25.74507 -25.35971
-24.73053 -23.49714 -23.01036 -21.81124 -20.34369 -19.64795 -19.40822 -19.17407
-18.38439 -18.24283 -17.87850 -17.25607 -16.74384 -16.36099 -16.22729 -16.07497
-15.51068 -15.30480 -15.00795 -14.97458 -14.73262 -14.57483 -14.43843 -14.35909
-14.26600 -14.00340 -13.76485 -13.21178 -12.92298 -12.73578 -12.59670 -12.37992
-12.29927 -12.07547 -11.97256 -11.84131 -11.78510 -11.47712 -11.23274 -11.05833
-10.99705 -10.85614 -10.69910 -9.73920 -9.20927 -9.07351 -8.34327 -5.28454
-0.29449 -0.18507 0.69266 0.90070 1.41039 1.60493 1.71124 1.78922
1.82177 2.03099 2.19555 2.73527 2.95559 3.29248 3.44058 3.55311
3.61977 3.71721 3.76530 3.86860 3.92187 4.04559 4.09032 4.22870
4.30408 4.41779 4.48895 4.52808 4.53892 4.64079 4.73368 4.79085
4.92257 5.00666 5.03871 5.04848 5.17121 5.27043 5.32009 5.50808
5.60266 5.62748 5.66353 5.72692 5.82271 6.35954 6.53627 6.58188
7.04909 7.13592 8.03623 8.16083 9.17737
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.015395 B = 0.002670 C = 0.002509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.385882 B =10483.027436 C =11157.632270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.151 3.849
3 H 0.098 0.902
4 C -0.124 4.124
5 C 0.179 3.821
6 H 0.056 0.944
7 N -0.751 5.751
8 C -0.319 4.319
9 H 0.070 0.930
10 C -0.109 4.109
11 N -0.981 5.981
12 Si 1.128 2.872
13 H -0.268 1.268
14 H -0.296 1.296
15 H -0.294 1.294
16 C -0.140 4.140
17 C 0.106 3.894
18 N -0.590 5.590
19 C 0.605 3.395
20 O -0.578 6.578
21 C -0.320 4.320
22 C 0.138 3.862
23 N -0.308 5.308
24 N -0.368 5.368
25 C 0.368 3.632
26 N -0.578 5.578
27 H 0.454 0.546
28 C 0.228 3.772
29 C -0.322 4.322
30 C 0.543 3.457
31 O -0.548 6.548
32 H 0.063 0.937
33 H 0.068 0.932
34 H 0.074 0.926
35 H 0.049 0.951
36 H 0.071 0.929
37 H 0.356 0.644
38 H 0.244 0.756
39 H 0.062 0.938
40 H 0.039 0.961
41 H 0.100 0.900
42 H 0.098 0.902
43 H 0.237 0.763
44 H 0.259 0.741
45 H 0.205 0.795
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.318 15.042 19.072 24.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.048 3.952
3 H 0.116 0.884
4 C -0.163 4.163
5 C 0.071 3.929
6 H 0.074 0.926
7 N -0.392 5.392
8 C -0.450 4.450
9 H 0.088 0.912
10 C -0.300 4.300
11 N -0.630 5.630
12 Si 0.954 3.046
13 H -0.193 1.193
14 H -0.223 1.223
15 H -0.221 1.221
16 C -0.181 4.181
17 C -0.017 4.017
18 N -0.321 5.321
19 C 0.395 3.605
20 O -0.460 6.460
21 C -0.338 4.338
22 C -0.051 4.051
23 N -0.125 5.125
24 N -0.167 5.167
25 C 0.142 3.858
26 N -0.195 5.195
27 H 0.298 0.702
28 C 0.100 3.900
29 C -0.350 4.350
30 C 0.345 3.655
31 O -0.424 6.424
32 H 0.082 0.918
33 H 0.087 0.913
34 H 0.093 0.907
35 H 0.068 0.932
36 H 0.090 0.910
37 H 0.187 0.813
38 H 0.054 0.946
39 H 0.080 0.920
40 H 0.058 0.942
41 H 0.118 0.882
42 H 0.116 0.884
43 H 0.253 0.747
44 H 0.275 0.725
45 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges 3.306 13.110 19.672 23.870
hybrid contribution 0.405 1.523 -0.240 1.594
sum 3.711 14.633 19.432 24.607
Atomic orbital electron populations
1.22113 0.93172 1.03044 1.03084 1.21110 0.95221 0.96469 0.82373
0.88447 1.22092 1.00445 0.95713 0.98022 1.20395 0.97010 0.90115
0.85363 0.92641 1.42718 1.37418 1.29859 1.29171 1.20406 1.12017
1.03265 1.09334 0.91158 1.27071 0.99919 1.07259 0.95703 1.70935
1.24141 1.24972 1.42946 0.82598 0.74457 0.71974 0.75582 1.19287
1.22344 1.22124 1.22436 0.99806 1.00108 0.95765 1.22181 1.02622
0.78550 0.98356 1.47959 1.54893 1.09530 1.19709 1.16919 0.76834
0.84972 0.81738 1.90731 1.56950 1.17251 1.81072 1.19368 1.00478
1.11136 1.02781 1.24882 0.99508 0.91407 0.89281 1.77578 0.95370
1.17411 1.22153 1.48234 1.20536 1.28248 1.19707 1.18913 0.90611
0.87793 0.88472 1.41380 1.17600 1.33317 1.27226 0.70214 1.23423
0.88938 0.94175 0.83468 1.21910 1.02746 1.03459 1.06918 1.18269
0.81220 0.85424 0.80546 1.90886 1.76969 1.43075 1.31480 0.91804
0.91325 0.90665 0.93224 0.90993 0.81282 0.94586 0.91960 0.94182
0.88210 0.88434 0.74661 0.72473 0.77824
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.13 9.02 71.98 0.65 -2.48 16
2 C 0.15 3.61 3.22 44.98 0.14 3.75 16
3 H 0.10 2.40 7.00 -2.39 -0.02 2.38 16
4 C -0.12 -3.69 5.02 30.67 0.15 -3.54 16
5 C 0.18 6.33 2.52 45.02 0.11 6.45 16
6 H 0.06 1.96 6.44 -2.39 -0.02 1.94 16
7 N -0.75 -35.78 5.12 -322.82 -1.65 -37.44 16
8 C -0.32 -17.05 9.93 84.03 0.83 -16.21 16
9 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16
10 C -0.11 -6.16 5.50 84.86 0.47 -5.69 16
11 N -0.98 -60.68 13.70 21.65 0.30 -60.39 16
12 Si 1.13 51.15 29.92 68.60 2.05 53.20 16
13 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
14 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16
15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16
16 C -0.14 -4.36 5.66 30.67 0.17 -4.19 16
17 C 0.11 2.28 4.82 86.36 0.42 2.70 16
18 N -0.59 -13.44 2.68 -799.51 -2.14 -15.59 16
19 C 0.61 14.22 7.59 86.49 0.66 14.88 16
20 O -0.58 -15.48 15.99 -4.28 -0.07 -15.55 16
21 C -0.32 -6.87 5.48 -20.02 -0.11 -6.98 16
22 C 0.14 2.86 9.54 85.66 0.82 3.68 16
23 N -0.31 -8.41 12.54 -56.31 -0.71 -9.12 16
24 N -0.37 -9.34 3.79 -315.76 -1.20 -10.54 16
25 C 0.37 7.35 7.86 132.61 1.04 8.39 16
26 N -0.58 -5.96 5.39 -191.03 -1.03 -6.99 16
27 H 0.45 3.34 8.46 -92.71 -0.78 2.55 16
28 C 0.23 0.80 11.25 83.30 0.94 1.73 16
29 C -0.32 -3.73 9.95 22.26 0.22 -3.51 16
30 C 0.54 13.63 7.70 84.91 0.65 14.28 16
31 O -0.55 -18.75 17.91 -4.75 -0.09 -18.83 16
32 H 0.06 1.32 5.72 -2.39 -0.01 1.31 16
33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16
34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
37 H 0.36 18.18 6.63 -92.70 -0.61 17.56 16
38 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16
39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
40 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16
41 H 0.10 1.92 4.34 -2.38 -0.01 1.91 16
42 H 0.10 1.69 7.49 -2.39 -0.02 1.67 16
43 H 0.24 3.14 6.66 -2.91 -0.02 3.12 16
44 H 0.26 -2.56 8.06 -2.91 -0.02 -2.58 16
45 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16
Total: -1.00 -86.97 365.71 2.45 -84.52
By element:
Atomic # 1 Polarization: 23.66 SS G_CDS: -0.19 Total: 23.48 kcal
Atomic # 6 Polarization: 6.07 SS G_CDS: 7.17 Total: 13.24 kcal
Atomic # 7 Polarization: -133.63 SS G_CDS: -6.43 Total: -140.06 kcal
Atomic # 8 Polarization: -34.23 SS G_CDS: -0.15 Total: -34.38 kcal
Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal
Total: -86.97 2.45 -84.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044766621.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.628 kcal
(2) G-P(sol) polarization free energy of solvation -86.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds