Wall clock time and date at job start Wed Apr 1 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.70391 * 2 1 4 4 C 1.52761 * 109.50690 * 239.88367 * 2 1 3 5 5 C 1.53038 * 109.38526 * 185.70597 * 4 2 1 6 6 H 1.09008 * 109.45996 * 301.22352 * 5 4 2 7 7 N 1.46501 * 109.46189 * 181.26109 * 5 4 2 8 8 C 1.36938 * 119.99744 * 154.93627 * 7 5 4 9 9 H 1.08002 * 120.00571 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00064 * 180.02562 * 8 7 5 11 11 N 1.31626 * 119.99784 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00368 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46844 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47128 * 119.99909 * 12 10 8 15 15 H 1.48502 * 109.47198 * 240.00179 * 12 10 8 16 16 C 1.53043 * 109.53734 * 61.23735 * 5 4 2 17 17 C 1.53187 * 109.31562 * 298.63890 * 16 5 4 18 18 N 1.46921 * 109.58904 * 120.35783 * 2 1 3 19 19 C 1.34777 * 120.62855 * 353.41913 * 18 2 1 20 20 O 1.21593 * 120.00141 * 5.53686 * 19 18 2 21 21 C 1.47543 * 119.99929 * 185.54125 * 19 18 2 22 22 C 1.46399 * 120.25533 * 36.10480 * 21 19 18 23 23 C 1.35590 * 119.11046 * 179.97438 * 22 21 19 24 24 C 1.41176 * 119.48151 * 0.02562 * 23 22 21 25 25 N 1.32061 * 132.79489 * 179.97438 * 24 23 22 26 26 N 1.28595 * 109.72022 * 180.02562 * 25 24 23 27 27 C 1.31091 * 110.34755 * 359.74140 * 26 25 24 28 28 O 1.35694 * 126.32704 * 180.30506 * 27 26 25 29 29 N 1.36521 * 107.33456 * 0.40807 * 27 26 25 30 30 C 1.36026 * 133.10205 * 179.89104 * 29 27 26 31 31 H 1.09002 * 109.46787 * 303.50766 * 1 2 3 32 32 H 1.09004 * 109.47000 * 63.49712 * 1 2 3 33 33 H 1.08993 * 109.47815 * 183.50378 * 1 2 3 34 34 H 1.09007 * 109.56717 * 65.67370 * 4 2 1 35 35 H 1.08997 * 109.36178 * 305.61723 * 4 2 1 36 36 H 0.96989 * 120.00226 * 334.93154 * 7 5 4 37 37 H 0.96993 * 119.99952 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.50005 * 178.68123 * 16 5 4 39 39 H 1.08999 * 109.49333 * 58.59054 * 16 5 4 40 40 H 1.09004 * 109.58836 * 294.84553 * 17 16 5 41 41 H 1.08999 * 109.70545 * 174.48745 * 17 16 5 42 42 H 1.08003 * 120.44473 * 359.95586 * 22 21 19 43 43 H 1.07996 * 120.26528 * 180.02562 * 23 22 21 44 44 H 0.96704 * 113.99651 * 270.11737 * 28 27 26 45 45 H 1.08001 * 119.79979 * 359.68403 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 6 3.5637 -0.8462 -1.1728 6 1 4.0057 0.1476 -1.0997 7 7 4.0576 -1.5121 -2.3806 8 6 5.3418 -1.2969 -2.8046 9 1 5.9905 -0.6361 -2.2488 10 6 5.8097 -1.9275 -3.9493 11 7 5.0190 -2.7325 -4.6270 12 14 7.5612 -1.6335 -4.5281 13 1 8.2387 -0.6945 -3.5982 14 1 8.2976 -2.9228 -4.5522 15 1 7.5400 -1.0498 -5.8934 16 6 3.9522 -1.6687 0.0580 17 6 3.4644 -0.9520 1.3209 18 7 2.0226 -0.6996 1.1944 19 6 1.1674 -1.1070 2.1531 20 8 -0.0315 -0.9876 1.9891 21 6 1.6859 -1.6980 3.4016 22 6 2.9261 -1.1959 3.9958 23 6 3.3813 -1.7556 5.1439 24 6 2.6529 -2.8077 5.7403 25 7 2.8466 -3.5278 6.8302 26 7 1.8950 -4.3830 6.9600 27 6 1.0373 -4.2635 5.9759 28 8 -0.0892 -4.9987 5.7976 29 7 1.4883 -3.2641 5.1624 30 6 1.0132 -2.7170 4.0112 31 1 -0.3633 0.5673 0.8569 32 1 -0.3633 0.4586 -0.9197 33 1 -0.3634 -1.0256 0.0628 34 1 1.7632 -0.1565 -2.1350 35 1 1.5963 -1.7168 -1.2937 36 1 3.4750 -2.1054 -2.8800 37 1 5.3458 -3.1728 -5.4271 38 1 5.0363 -1.7763 0.0964 39 1 3.4904 -2.6542 -0.0025 40 1 3.9929 -0.0050 1.4309 41 1 3.6506 -1.5779 2.1937 42 1 3.4713 -0.3907 3.5259 43 1 4.2938 -1.3995 5.5986 44 1 0.0439 -5.8018 5.2756 45 1 0.0981 -3.0915 3.5768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044773611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:11 Heat of formation + Delta-G solvation = 81.987830 kcal Electronic energy + Delta-G solvation = -30329.055244 eV Core-core repulsion = 26157.534858 eV Total energy + Delta-G solvation = -4171.520386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.97625 -40.89557 -38.48185 -38.10330 -37.48392 -34.85197 -34.28837 -33.03133 -32.07088 -31.27759 -29.53625 -29.32714 -27.20141 -25.44845 -24.58039 -24.12254 -22.99240 -22.96402 -22.04926 -20.61298 -19.92702 -19.32802 -18.58905 -17.69315 -17.25765 -17.12365 -16.60277 -16.12146 -15.48411 -15.41832 -15.25737 -15.04938 -14.85165 -14.13770 -13.81640 -13.63465 -13.42409 -13.35403 -13.00654 -12.94484 -12.71815 -12.62021 -12.34273 -12.25935 -12.06769 -11.77134 -11.68198 -11.32328 -11.00705 -10.93485 -10.92026 -10.89694 -10.56961 -10.30750 -10.02388 -9.90756 -9.82205 -9.32961 -9.01488 -8.69819 -8.57278 -7.08395 -5.87032 -3.16873 0.02951 0.33793 1.36857 1.86937 2.44575 2.65910 2.94567 3.21662 3.35789 3.41328 3.43959 3.62299 3.86496 3.99511 4.20334 4.36310 4.48383 4.67377 4.87038 4.99591 5.02167 5.11731 5.16565 5.28840 5.33955 5.34580 5.38874 5.44700 5.50942 5.64185 5.68685 5.75142 5.87005 5.97881 6.01815 6.12163 6.19019 6.29904 6.31789 6.39779 6.58585 6.74381 6.74661 6.89886 7.22405 7.59543 7.88756 7.97356 8.30880 9.42472 9.98855 10.33112 11.35374 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.002649 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.521642 B =10568.291891 C =11542.980060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.152 4.152 17 C 0.094 3.906 18 N -0.589 5.589 19 C 0.569 3.431 20 O -0.527 6.527 21 C -0.144 4.144 22 C -0.064 4.064 23 C -0.083 4.083 24 C 0.216 3.784 25 N -0.271 5.271 26 N -0.238 5.238 27 C 0.321 3.679 28 O -0.427 6.427 29 N -0.405 5.405 30 C 0.130 3.870 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.408 0.592 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 2.575 17.620 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.193 4.193 17 C -0.029 4.029 18 N -0.321 5.321 19 C 0.355 3.645 20 O -0.406 6.406 21 C -0.151 4.151 22 C -0.088 4.088 23 C -0.104 4.104 24 C -0.034 4.034 25 N -0.118 5.118 26 N -0.087 5.087 27 C 0.022 3.978 28 O -0.226 6.226 29 N -0.097 5.097 30 C 0.007 3.993 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.265 0.735 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.070 2.370 19.173 20.936 hybrid contribution 0.392 -0.268 -2.090 2.143 sum -7.678 2.101 17.083 18.847 Atomic orbital electron populations 1.22228 0.92654 1.03713 1.00788 1.21318 0.95566 0.95151 0.83419 0.90603 1.22245 0.97658 1.01117 0.96507 1.20169 0.90874 0.95019 0.87115 0.93302 1.42430 1.12943 1.54631 1.26352 1.19259 0.89038 1.22545 1.06450 0.91071 1.24763 0.98190 0.99758 0.98124 1.69670 1.35307 1.33643 1.19275 0.86141 0.84393 0.77329 0.78441 1.20502 1.21857 1.21828 1.22710 1.01973 1.00064 0.94534 1.22356 0.79246 1.00913 1.00377 1.48086 1.07784 1.56375 1.19841 1.17621 0.86035 0.78595 0.82210 1.90903 1.14860 1.55699 1.79104 1.20733 0.97179 0.98808 0.98401 1.22532 0.93133 0.99357 0.93820 1.20235 1.00886 0.93841 0.95393 1.22149 0.86805 1.00224 0.94267 1.74967 1.17490 1.05496 1.13815 1.74549 0.99202 1.16972 1.18017 1.21865 0.92624 0.92718 0.90628 1.85023 1.23605 1.38929 1.75062 1.43985 1.20124 1.27082 1.18528 1.21632 0.98997 0.94231 0.84469 0.91325 0.93491 0.91093 0.90315 0.91724 0.78243 0.93477 0.90327 0.92180 0.90776 0.89618 0.81982 0.81375 0.73453 0.80176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.58 37.16 0.28 -1.38 16 2 C 0.15 1.79 3.47 -67.82 -0.24 1.55 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.14 -1.99 4.81 -26.83 -0.13 -2.12 16 5 C 0.18 3.05 2.73 -67.89 -0.19 2.87 16 6 H 0.05 0.85 8.08 -51.92 -0.42 0.43 16 7 N -0.72 -16.61 5.12 -53.38 -0.27 -16.89 16 8 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 12 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 C -0.15 -2.20 5.66 -26.61 -0.15 -2.35 16 17 C 0.09 0.95 4.82 -3.71 -0.02 0.94 16 18 N -0.59 -6.58 2.98 -166.69 -0.50 -7.07 16 19 C 0.57 6.46 7.30 -12.47 -0.09 6.37 16 20 O -0.53 -7.18 12.20 5.28 0.06 -7.12 16 21 C -0.14 -1.34 5.32 -103.45 -0.55 -1.89 16 22 C -0.06 -0.46 7.57 -37.25 -0.28 -0.75 16 23 C -0.08 -0.63 10.09 -39.41 -0.40 -1.03 16 24 C 0.22 2.33 7.91 -155.70 -1.23 1.09 16 25 N -0.27 -3.53 12.28 31.26 0.38 -3.15 16 26 N -0.24 -3.13 12.19 29.73 0.36 -2.77 16 27 C 0.32 3.49 9.38 -88.52 -0.83 2.66 16 28 O -0.43 -3.40 13.65 -18.79 -0.26 -3.65 16 29 N -0.40 -4.18 2.95 -63.68 -0.19 -4.37 16 30 C 0.13 1.21 10.54 -16.33 -0.17 1.04 16 31 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 34 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 41 H 0.09 0.72 4.46 -51.93 -0.23 0.49 16 42 H 0.16 0.83 6.28 -52.48 -0.33 0.50 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.41 1.06 9.06 45.56 0.41 1.47 16 45 H 0.18 1.44 7.97 -52.49 -0.42 1.03 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -33.58 366.17 -8.35 -41.93 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.93 Total: 7.33 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -4.24 Total: 0.18 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.51 Total: -60.53 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.19 Total: -10.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.58 -8.35 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044773611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.921 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds