Wall clock time and date at job start Wed Apr 1 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.70391 * 2 1 4 4 C 1.52761 * 109.50690 * 239.88367 * 2 1 3 5 5 C 1.53038 * 109.38526 * 185.70597 * 4 2 1 6 6 H 1.09008 * 109.45996 * 301.22352 * 5 4 2 7 7 N 1.46501 * 109.46189 * 181.26109 * 5 4 2 8 8 C 1.36938 * 119.99744 * 154.93627 * 7 5 4 9 9 H 1.08002 * 120.00571 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00064 * 180.02562 * 8 7 5 11 11 N 1.31626 * 119.99784 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00368 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46844 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47128 * 119.99909 * 12 10 8 15 15 H 1.48502 * 109.47198 * 240.00179 * 12 10 8 16 16 C 1.53043 * 109.53734 * 61.23735 * 5 4 2 17 17 C 1.53187 * 109.31562 * 298.63890 * 16 5 4 18 18 N 1.46921 * 109.58904 * 120.35783 * 2 1 3 19 19 C 1.34777 * 120.62855 * 353.41913 * 18 2 1 20 20 O 1.21593 * 120.00141 * 5.53686 * 19 18 2 21 21 C 1.47543 * 119.99929 * 185.54125 * 19 18 2 22 22 C 1.46399 * 120.25533 * 36.10480 * 21 19 18 23 23 C 1.35590 * 119.11046 * 179.97438 * 22 21 19 24 24 C 1.41176 * 119.48151 * 0.02562 * 23 22 21 25 25 N 1.32061 * 132.79489 * 179.97438 * 24 23 22 26 26 N 1.28595 * 109.72022 * 180.02562 * 25 24 23 27 27 C 1.31091 * 110.34755 * 359.74140 * 26 25 24 28 28 O 1.35694 * 126.32704 * 180.30506 * 27 26 25 29 29 N 1.36521 * 107.33456 * 0.40807 * 27 26 25 30 30 C 1.36026 * 133.10205 * 179.89104 * 29 27 26 31 31 H 1.09002 * 109.46787 * 303.50766 * 1 2 3 32 32 H 1.09004 * 109.47000 * 63.49712 * 1 2 3 33 33 H 1.08993 * 109.47815 * 183.50378 * 1 2 3 34 34 H 1.09007 * 109.56717 * 65.67370 * 4 2 1 35 35 H 1.08997 * 109.36178 * 305.61723 * 4 2 1 36 36 H 0.96989 * 120.00226 * 334.93154 * 7 5 4 37 37 H 0.96993 * 119.99952 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.50005 * 178.68123 * 16 5 4 39 39 H 1.08999 * 109.49333 * 58.59054 * 16 5 4 40 40 H 1.09004 * 109.58836 * 294.84553 * 17 16 5 41 41 H 1.08999 * 109.70545 * 174.48745 * 17 16 5 42 42 H 1.08003 * 120.44473 * 359.95586 * 22 21 19 43 43 H 1.07996 * 120.26528 * 180.02562 * 23 22 21 44 44 H 0.96704 * 113.99651 * 270.11737 * 28 27 26 45 45 H 1.08001 * 119.79979 * 359.68403 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 6 3.5637 -0.8462 -1.1728 6 1 4.0057 0.1476 -1.0997 7 7 4.0576 -1.5121 -2.3806 8 6 5.3418 -1.2969 -2.8046 9 1 5.9905 -0.6361 -2.2488 10 6 5.8097 -1.9275 -3.9493 11 7 5.0190 -2.7325 -4.6270 12 14 7.5612 -1.6335 -4.5281 13 1 8.2387 -0.6945 -3.5982 14 1 8.2976 -2.9228 -4.5522 15 1 7.5400 -1.0498 -5.8934 16 6 3.9522 -1.6687 0.0580 17 6 3.4644 -0.9520 1.3209 18 7 2.0226 -0.6996 1.1944 19 6 1.1674 -1.1070 2.1531 20 8 -0.0315 -0.9876 1.9891 21 6 1.6859 -1.6980 3.4016 22 6 2.9261 -1.1959 3.9958 23 6 3.3813 -1.7556 5.1439 24 6 2.6529 -2.8077 5.7403 25 7 2.8466 -3.5278 6.8302 26 7 1.8950 -4.3830 6.9600 27 6 1.0373 -4.2635 5.9759 28 8 -0.0892 -4.9987 5.7976 29 7 1.4883 -3.2641 5.1624 30 6 1.0132 -2.7170 4.0112 31 1 -0.3633 0.5673 0.8569 32 1 -0.3633 0.4586 -0.9197 33 1 -0.3634 -1.0256 0.0628 34 1 1.7632 -0.1565 -2.1350 35 1 1.5963 -1.7168 -1.2937 36 1 3.4750 -2.1054 -2.8800 37 1 5.3458 -3.1728 -5.4271 38 1 5.0363 -1.7763 0.0964 39 1 3.4904 -2.6542 -0.0025 40 1 3.9929 -0.0050 1.4309 41 1 3.6506 -1.5779 2.1937 42 1 3.4713 -0.3907 3.5259 43 1 4.2938 -1.3995 5.5986 44 1 0.0439 -5.8018 5.2756 45 1 0.0981 -3.0915 3.5768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044773611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:10 Heat of formation + Delta-G solvation = 57.184283 kcal Electronic energy + Delta-G solvation = -30330.130806 eV Core-core repulsion = 26157.534858 eV Total energy + Delta-G solvation = -4172.595948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.75547 -41.82535 -39.30621 -38.85047 -38.50069 -36.25024 -35.17627 -33.94402 -33.68375 -32.13247 -30.96888 -30.21136 -28.37738 -26.34220 -25.86693 -25.17976 -24.21201 -23.71825 -23.03183 -21.75273 -20.87472 -20.19947 -19.40367 -19.07563 -18.43135 -17.93216 -17.43423 -17.06369 -16.69343 -16.42598 -16.15569 -15.99209 -15.71122 -15.46339 -15.41414 -14.76326 -14.58719 -14.35284 -14.06890 -13.68117 -13.66140 -13.53073 -13.37447 -13.25584 -13.07448 -12.90830 -12.87953 -12.66852 -12.59269 -12.15905 -12.09022 -11.99537 -11.88456 -11.68228 -11.65654 -11.32942 -10.90233 -10.73496 -10.27997 -9.65835 -9.31608 -8.97774 -7.91417 -5.19540 -0.68900 -0.33198 0.62478 1.08185 1.50072 1.50752 1.60018 1.61698 1.80620 2.19595 2.51722 2.58676 2.94142 3.09950 3.37079 3.42555 3.46895 3.65181 3.77426 3.82602 4.01760 4.11127 4.14465 4.27839 4.35701 4.38805 4.59836 4.64301 4.65218 4.71088 4.74952 4.79217 4.84735 4.87829 5.03428 5.10158 5.12344 5.18473 5.27907 5.37843 5.46256 5.53683 5.58057 5.69951 6.22065 6.30272 6.32766 6.99208 7.16041 7.36840 8.13585 8.34862 9.32499 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.002649 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.521642 B =10568.291891 C =11542.980060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.097 0.903 4 C -0.126 4.126 5 C 0.172 3.828 6 H 0.055 0.945 7 N -0.739 5.739 8 C -0.228 4.228 9 H 0.083 0.917 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.967 3.033 13 H -0.260 1.260 14 H -0.299 1.299 15 H -0.299 1.299 16 C -0.143 4.143 17 C 0.102 3.898 18 N -0.589 5.589 19 C 0.572 3.428 20 O -0.552 6.552 21 C -0.147 4.147 22 C -0.053 4.053 23 C -0.079 4.079 24 C 0.210 3.790 25 N -0.305 5.305 26 N -0.272 5.272 27 C 0.326 3.674 28 O -0.429 6.429 29 N -0.407 5.407 30 C 0.128 3.872 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.369 0.631 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.193 0.807 43 H 0.199 0.801 44 H 0.430 0.570 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 4.456 19.054 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.115 0.885 4 C -0.165 4.165 5 C 0.064 3.936 6 H 0.073 0.927 7 N -0.378 5.378 8 C -0.360 4.360 9 H 0.101 0.899 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.797 3.203 13 H -0.184 1.184 14 H -0.227 1.227 15 H -0.227 1.227 16 C -0.184 4.184 17 C -0.020 4.020 18 N -0.320 5.320 19 C 0.360 3.640 20 O -0.432 6.432 21 C -0.154 4.154 22 C -0.077 4.077 23 C -0.100 4.100 24 C -0.040 4.040 25 N -0.151 5.151 26 N -0.122 5.122 27 C 0.025 3.975 28 O -0.232 6.232 29 N -0.099 5.099 30 C 0.004 3.996 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.200 0.800 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.210 0.790 43 H 0.216 0.784 44 H 0.292 0.708 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.189 4.263 20.675 22.300 hybrid contribution -0.007 -0.849 -2.521 2.660 sum -7.196 3.414 18.154 19.824 Atomic orbital electron populations 1.22101 0.92688 1.02563 1.01102 1.21237 0.95414 0.95737 0.82458 0.88502 1.22102 0.95923 1.00527 0.97924 1.20464 0.92220 0.94997 0.85952 0.92663 1.42698 1.12060 1.54818 1.28237 1.19680 0.90042 1.20770 1.05547 0.89925 1.25528 1.01793 1.00740 0.99123 1.69827 1.37043 1.35689 1.19895 0.85152 0.80430 0.76969 0.77724 1.18433 1.22671 1.22673 1.22479 1.01301 0.99110 0.95471 1.22424 0.78573 1.02412 0.98607 1.48082 1.08234 1.56226 1.19491 1.17796 0.85627 0.77990 0.82635 1.90904 1.16009 1.56533 1.79725 1.20651 0.98202 0.98893 0.97666 1.22800 0.92016 0.99449 0.93397 1.20632 1.01472 0.92624 0.95273 1.22699 0.87080 1.00429 0.93805 1.74866 1.18257 1.06590 1.15376 1.74449 1.00216 1.18069 1.19423 1.21920 0.92539 0.92805 0.90252 1.84984 1.22553 1.39962 1.75672 1.44029 1.20169 1.27048 1.18695 1.21772 0.99291 0.94367 0.84144 0.91418 0.92760 0.92937 0.91080 0.93385 0.80000 0.94335 0.91233 0.94127 0.87587 0.87243 0.78975 0.78422 0.70797 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.58 71.98 0.55 -2.36 16 2 C 0.15 3.36 3.47 44.83 0.16 3.51 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.13 -3.56 4.81 30.53 0.15 -3.41 16 5 C 0.17 5.62 2.73 45.02 0.12 5.74 16 6 H 0.06 1.76 8.08 -2.38 -0.02 1.74 16 7 N -0.74 -33.93 5.12 -322.80 -1.65 -35.58 16 8 C -0.23 -11.63 9.93 84.03 0.83 -10.80 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 11 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 12 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 13 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 C -0.14 -3.85 5.66 30.67 0.17 -3.68 16 17 C 0.10 1.66 4.82 86.36 0.42 2.07 16 18 N -0.59 -11.33 2.98 -799.55 -2.38 -13.72 16 19 C 0.57 11.51 7.30 86.70 0.63 12.14 16 20 O -0.55 -14.11 12.20 -4.01 -0.05 -14.16 16 21 C -0.15 -2.32 5.32 -19.11 -0.10 -2.42 16 22 C -0.05 -0.54 7.57 23.78 0.18 -0.36 16 23 C -0.08 -0.93 10.09 22.38 0.23 -0.71 16 24 C 0.21 4.18 7.91 134.08 1.06 5.24 16 25 N -0.30 -7.78 12.28 -55.01 -0.68 -8.46 16 26 N -0.27 -7.15 12.19 -173.29 -2.11 -9.27 16 27 C 0.33 6.86 9.38 179.61 1.69 8.55 16 28 O -0.43 -6.43 13.65 -90.13 -1.23 -7.66 16 29 N -0.41 -7.84 2.95 -465.98 -1.38 -9.21 16 30 C 0.13 2.13 10.54 83.63 0.88 3.01 16 31 H 0.07 1.58 6.75 -2.39 -0.02 1.57 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.40 6.75 -2.39 -0.02 1.38 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.37 18.90 7.80 -92.72 -0.72 18.18 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.18 8.05 -2.38 -0.02 1.16 16 41 H 0.11 1.34 4.46 -2.39 -0.01 1.32 16 42 H 0.19 0.82 6.28 -2.91 -0.02 0.80 16 43 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.43 1.75 9.06 -74.05 -0.67 1.08 16 45 H 0.19 2.76 7.97 -2.91 -0.02 2.73 16 Total: -1.00 -74.97 366.17 -0.07 -75.05 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.33 Total: 21.92 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.43 Total: 12.63 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -7.92 Total: -133.77 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.28 Total: -21.82 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.97 -0.07 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044773611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.230 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds