Wall clock time and date at job start Wed Apr 1 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.70671 * 2 1 4 4 C 1.52763 * 109.50856 * 239.87735 * 2 1 3 5 5 C 1.53034 * 109.38147 * 185.70874 * 4 2 1 6 6 H 1.08996 * 109.46068 * 301.22025 * 5 4 2 7 7 N 1.46511 * 109.45899 * 181.26155 * 5 4 2 8 8 C 1.36932 * 119.99779 * 154.92902 * 7 5 4 9 9 H 1.07998 * 120.00573 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99485 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00530 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99638 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47179 * 59.99983 * 12 10 8 14 14 H 1.48499 * 109.46904 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47242 * 300.00048 * 12 10 8 16 16 C 1.53040 * 109.54252 * 61.24484 * 5 4 2 17 17 C 1.53197 * 109.30943 * 298.63171 * 16 5 4 18 18 N 1.46928 * 109.58432 * 120.35619 * 2 1 3 19 19 C 1.34774 * 120.62980 * 353.41039 * 18 2 1 20 20 O 1.21636 * 120.00207 * 4.71471 * 19 18 2 21 21 C 1.47209 * 120.00123 * 184.70872 * 19 18 2 22 22 C 1.38838 * 120.90058 * 38.73623 * 21 19 18 23 23 C 1.39943 * 119.43506 * 179.97438 * 22 21 19 24 24 C 1.35017 * 121.26297 * 359.97438 * 23 22 21 25 25 N 1.36255 * 121.58393 * 0.02641 * 24 23 22 26 26 C 1.36366 * 133.87717 * 180.02562 * 25 24 23 27 27 O 1.35715 * 126.33086 * 359.96711 * 26 25 24 28 28 N 1.31105 * 107.33209 * 179.97438 * 26 25 24 29 29 N 1.28693 * 110.31259 * 0.02562 * 28 26 25 30 30 C 1.31483 * 109.67261 * 359.97438 * 29 28 26 31 31 H 1.09009 * 109.46945 * 303.97783 * 1 2 3 32 32 H 1.09003 * 109.47026 * 63.97127 * 1 2 3 33 33 H 1.08998 * 109.47816 * 183.97475 * 1 2 3 34 34 H 1.09003 * 109.55947 * 65.67437 * 4 2 1 35 35 H 1.09004 * 109.35850 * 305.61913 * 4 2 1 36 36 H 0.96999 * 119.99635 * 334.93562 * 7 5 4 37 37 H 0.96997 * 120.00387 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.50344 * 178.68405 * 16 5 4 39 39 H 1.09001 * 109.49932 * 58.57841 * 16 5 4 40 40 H 1.08997 * 109.58822 * 294.84578 * 17 16 5 41 41 H 1.09004 * 109.70304 * 174.48504 * 17 16 5 42 42 H 1.08002 * 120.28720 * 359.95910 * 22 21 19 43 43 H 1.07997 * 119.36721 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.20653 * 179.97438 * 24 23 22 45 45 H 0.96701 * 114.00008 * 270.00086 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2455 5 6 3.5637 -0.8463 -1.1725 6 1 4.0056 0.1473 -1.0995 7 7 4.0577 -1.5124 -2.3804 8 6 5.3418 -1.2972 -2.8043 9 1 5.9907 -0.6368 -2.2482 10 6 5.8100 -1.9287 -3.9484 11 7 5.0195 -2.7339 -4.6260 12 14 7.5620 -1.6357 -4.5264 13 1 8.5108 -2.0631 -3.4669 14 1 7.8132 -2.4198 -5.7622 15 1 7.7547 -0.1908 -4.8098 16 6 3.9522 -1.6688 0.0582 17 6 3.4644 -0.9520 1.3212 18 7 2.0225 -0.6996 1.1945 19 6 1.1672 -1.1068 2.1532 20 8 -0.0315 -0.9735 1.9956 21 6 1.6838 -1.7132 3.3912 22 6 2.8366 -1.2295 3.9949 23 6 3.3001 -1.8288 5.1715 24 6 2.6472 -2.8691 5.7322 25 7 1.5119 -3.3808 5.1792 26 6 0.6696 -4.3976 5.5203 27 8 0.7879 -5.2118 6.5996 28 7 -0.2753 -4.4432 4.6127 29 7 -0.0876 -3.5294 3.7261 30 6 0.9950 -2.8435 4.0197 31 1 -0.3633 0.5744 0.8523 32 1 -0.3633 0.4510 -0.9235 33 1 -0.3635 -1.0251 0.0712 34 1 1.7632 -0.1566 -2.1349 35 1 1.5962 -1.7170 -1.2935 36 1 3.4750 -2.1057 -2.8797 37 1 5.3465 -3.1748 -5.4257 38 1 5.0362 -1.7763 0.0967 39 1 3.4903 -2.6543 -0.0021 40 1 3.9928 -0.0050 1.4311 41 1 3.6505 -1.5778 2.1940 42 1 3.3714 -0.3980 3.5602 43 1 4.1972 -1.4519 5.6400 44 1 3.0346 -3.3067 6.6404 45 1 1.3079 -6.0103 6.4349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044815454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:16 Heat of formation + Delta-G solvation = 87.056964 kcal Electronic energy + Delta-G solvation = -30579.640877 eV Core-core repulsion = 26408.340306 eV Total energy + Delta-G solvation = -4171.300572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.85924 -40.62587 -38.52068 -38.07989 -37.39470 -34.74683 -34.32133 -32.49012 -31.97293 -31.34708 -29.52289 -29.08699 -27.13583 -25.41868 -24.26274 -24.01687 -23.31648 -22.89572 -21.86396 -20.53682 -19.85817 -18.91050 -18.53397 -17.71634 -17.26026 -17.08618 -16.48172 -16.04184 -15.73263 -15.36263 -14.98054 -14.84838 -14.62966 -13.97404 -13.79361 -13.47833 -13.28634 -13.16442 -13.00152 -12.97521 -12.75219 -12.51475 -12.15639 -12.10779 -12.00615 -11.62907 -11.56677 -11.14432 -10.93223 -10.84971 -10.79771 -10.75959 -10.46109 -10.30114 -9.99192 -9.88497 -9.73916 -9.10640 -8.94695 -8.54137 -8.42530 -7.01608 -5.80549 -3.10217 -0.17404 0.57137 1.41328 2.14739 2.40457 2.76219 3.14450 3.22034 3.39397 3.43944 3.45765 3.60300 3.81317 4.15458 4.19522 4.39133 4.53647 4.87168 4.93398 4.99805 5.11978 5.17391 5.26002 5.32611 5.35449 5.40625 5.44866 5.47967 5.58974 5.65447 5.77579 5.88458 6.01845 6.07158 6.11969 6.23886 6.32479 6.43381 6.46809 6.52246 6.75999 6.78738 6.86580 7.00841 7.39777 7.63571 8.13601 8.14448 8.37363 9.48491 10.06228 10.40765 11.41812 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002742 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.082308 B =10208.156241 C =10913.836187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.151 3.849 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.093 3.907 18 N -0.593 5.593 19 C 0.564 3.436 20 O -0.504 6.504 21 C -0.078 4.078 22 C -0.051 4.051 23 C -0.141 4.141 24 C 0.085 3.915 25 N -0.406 5.406 26 C 0.314 3.686 27 O -0.428 6.428 28 N -0.237 5.237 29 N -0.246 5.246 30 C 0.234 3.766 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.173 0.827 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 2.371 24.121 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.029 4.029 18 N -0.327 5.327 19 C 0.350 3.650 20 O -0.380 6.380 21 C -0.085 4.085 22 C -0.075 4.075 23 C -0.163 4.163 24 C -0.037 4.037 25 N -0.099 5.099 26 C 0.014 3.986 27 O -0.227 6.227 28 N -0.087 5.087 29 N -0.092 5.092 30 C -0.018 4.018 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.190 0.810 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.984 2.199 23.657 24.091 hybrid contribution 2.574 -0.348 0.225 2.607 sum -1.410 1.851 23.882 23.995 Atomic orbital electron populations 1.22244 0.92603 1.04048 1.00614 1.21277 0.95639 0.94889 0.83344 0.90785 1.22249 0.97538 1.01273 0.96539 1.20161 0.90981 0.94895 0.87059 0.93377 1.42429 1.12886 1.54648 1.26406 1.19169 0.89093 1.22563 1.06482 0.91226 1.24756 0.98109 0.99809 0.98169 1.69648 1.35408 1.33534 1.19319 0.86291 0.84579 0.77476 0.77939 1.21310 1.21715 1.21257 1.22696 1.01726 1.00194 0.94665 1.22288 0.79571 1.00680 1.00404 1.48074 1.07561 1.57062 1.19970 1.17492 0.86299 0.78936 0.82268 1.90936 1.14604 1.54338 1.78139 1.20258 0.95379 0.94851 0.97995 1.22021 0.92547 0.99023 0.93891 1.20837 1.02102 0.96358 0.96989 1.21735 0.85799 0.96625 0.99555 1.44067 1.19620 1.25500 1.20723 1.21784 0.90969 0.91934 0.93913 1.85014 1.74921 1.35333 1.27393 1.74710 1.18725 1.15914 0.99312 1.74965 1.12008 1.03966 1.18278 1.22594 0.94754 0.98412 0.86064 0.91343 0.93609 0.90797 0.90373 0.91614 0.78199 0.93393 0.90523 0.92135 0.90928 0.90040 0.82032 0.81779 0.81016 0.73745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.58 37.16 0.28 -1.69 16 2 C 0.15 2.08 3.48 -67.82 -0.24 1.85 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.22 4.81 -26.84 -0.13 -2.35 16 5 C 0.18 3.27 2.73 -67.89 -0.19 3.08 16 6 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.32 5.12 -53.38 -0.27 -17.59 16 8 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 12 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 17 C 0.09 1.06 4.90 -3.71 -0.02 1.04 16 18 N -0.59 -7.77 2.98 -166.80 -0.50 -8.27 16 19 C 0.56 8.09 7.29 -12.62 -0.09 8.00 16 20 O -0.50 -8.77 12.36 5.25 0.06 -8.70 16 21 C -0.08 -0.93 5.37 -102.69 -0.55 -1.48 16 22 C -0.05 -0.37 7.47 -38.72 -0.29 -0.66 16 23 C -0.14 -0.67 9.91 -40.09 -0.40 -1.07 16 24 C 0.09 0.51 10.93 -16.73 -0.18 0.32 16 25 N -0.41 -4.23 2.97 -62.51 -0.19 -4.42 16 26 C 0.31 3.58 9.41 -88.65 -0.83 2.74 16 27 O -0.43 -3.22 13.65 -18.85 -0.26 -3.48 16 28 N -0.24 -3.63 12.20 29.70 0.36 -3.26 16 29 N -0.25 -4.16 12.26 32.37 0.40 -3.76 16 30 C 0.23 3.23 7.82 -153.90 -1.20 2.03 16 31 H 0.07 1.01 6.75 -51.92 -0.35 0.65 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.23 6.74 -51.93 -0.35 0.88 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.08 0.76 4.58 -51.93 -0.24 0.52 16 42 H 0.16 0.83 6.42 -52.49 -0.34 0.49 16 43 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 44 H 0.17 0.38 8.06 -52.49 -0.42 -0.05 16 45 H 0.41 0.83 9.06 45.56 0.41 1.24 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -36.85 366.92 -8.34 -45.19 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.95 Total: 6.72 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -4.23 Total: 2.30 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: 0.53 Total: -64.22 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.19 Total: -12.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.85 -8.34 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044815454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.245 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds