Wall clock time and date at job start Wed Apr 1 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.70671 * 2 1 4 4 C 1.52763 * 109.50856 * 239.87735 * 2 1 3 5 5 C 1.53034 * 109.38147 * 185.70874 * 4 2 1 6 6 H 1.08996 * 109.46068 * 301.22025 * 5 4 2 7 7 N 1.46511 * 109.45899 * 181.26155 * 5 4 2 8 8 C 1.36932 * 119.99779 * 154.92902 * 7 5 4 9 9 H 1.07998 * 120.00573 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99485 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00530 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99638 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47179 * 59.99983 * 12 10 8 14 14 H 1.48499 * 109.46904 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47242 * 300.00048 * 12 10 8 16 16 C 1.53040 * 109.54252 * 61.24484 * 5 4 2 17 17 C 1.53197 * 109.30943 * 298.63171 * 16 5 4 18 18 N 1.46928 * 109.58432 * 120.35619 * 2 1 3 19 19 C 1.34774 * 120.62980 * 353.41039 * 18 2 1 20 20 O 1.21636 * 120.00207 * 4.71471 * 19 18 2 21 21 C 1.47209 * 120.00123 * 184.70872 * 19 18 2 22 22 C 1.38838 * 120.90058 * 38.73623 * 21 19 18 23 23 C 1.39943 * 119.43506 * 179.97438 * 22 21 19 24 24 C 1.35017 * 121.26297 * 359.97438 * 23 22 21 25 25 N 1.36255 * 121.58393 * 0.02641 * 24 23 22 26 26 C 1.36366 * 133.87717 * 180.02562 * 25 24 23 27 27 O 1.35715 * 126.33086 * 359.96711 * 26 25 24 28 28 N 1.31105 * 107.33209 * 179.97438 * 26 25 24 29 29 N 1.28693 * 110.31259 * 0.02562 * 28 26 25 30 30 C 1.31483 * 109.67261 * 359.97438 * 29 28 26 31 31 H 1.09009 * 109.46945 * 303.97783 * 1 2 3 32 32 H 1.09003 * 109.47026 * 63.97127 * 1 2 3 33 33 H 1.08998 * 109.47816 * 183.97475 * 1 2 3 34 34 H 1.09003 * 109.55947 * 65.67437 * 4 2 1 35 35 H 1.09004 * 109.35850 * 305.61913 * 4 2 1 36 36 H 0.96999 * 119.99635 * 334.93562 * 7 5 4 37 37 H 0.96997 * 120.00387 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.50344 * 178.68405 * 16 5 4 39 39 H 1.09001 * 109.49932 * 58.57841 * 16 5 4 40 40 H 1.08997 * 109.58822 * 294.84578 * 17 16 5 41 41 H 1.09004 * 109.70304 * 174.48504 * 17 16 5 42 42 H 1.08002 * 120.28720 * 359.95910 * 22 21 19 43 43 H 1.07997 * 119.36721 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.20653 * 179.97438 * 24 23 22 45 45 H 0.96701 * 114.00008 * 270.00086 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2455 5 6 3.5637 -0.8463 -1.1725 6 1 4.0056 0.1473 -1.0995 7 7 4.0577 -1.5124 -2.3804 8 6 5.3418 -1.2972 -2.8043 9 1 5.9907 -0.6368 -2.2482 10 6 5.8100 -1.9287 -3.9484 11 7 5.0195 -2.7339 -4.6260 12 14 7.5620 -1.6357 -4.5264 13 1 8.5108 -2.0631 -3.4669 14 1 7.8132 -2.4198 -5.7622 15 1 7.7547 -0.1908 -4.8098 16 6 3.9522 -1.6688 0.0582 17 6 3.4644 -0.9520 1.3212 18 7 2.0225 -0.6996 1.1945 19 6 1.1672 -1.1068 2.1532 20 8 -0.0315 -0.9735 1.9956 21 6 1.6838 -1.7132 3.3912 22 6 2.8366 -1.2295 3.9949 23 6 3.3001 -1.8288 5.1715 24 6 2.6472 -2.8691 5.7322 25 7 1.5119 -3.3808 5.1792 26 6 0.6696 -4.3976 5.5203 27 8 0.7879 -5.2118 6.5996 28 7 -0.2753 -4.4432 4.6127 29 7 -0.0876 -3.5294 3.7261 30 6 0.9950 -2.8435 4.0197 31 1 -0.3633 0.5744 0.8523 32 1 -0.3633 0.4510 -0.9235 33 1 -0.3635 -1.0251 0.0712 34 1 1.7632 -0.1566 -2.1349 35 1 1.5962 -1.7170 -1.2935 36 1 3.4750 -2.1057 -2.8797 37 1 5.3465 -3.1748 -5.4257 38 1 5.0362 -1.7763 0.0967 39 1 3.4903 -2.6543 -0.0021 40 1 3.9928 -0.0050 1.4311 41 1 3.6505 -1.5778 2.1940 42 1 3.3714 -0.3980 3.5602 43 1 4.1972 -1.4519 5.6400 44 1 3.0346 -3.3067 6.6404 45 1 1.3079 -6.0103 6.4349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044815454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:15 Heat of formation + Delta-G solvation = 57.489272 kcal Electronic energy + Delta-G solvation = -30580.923029 eV Core-core repulsion = 26408.340306 eV Total energy + Delta-G solvation = -4172.582723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.66920 -41.68004 -39.25062 -38.76541 -38.63135 -36.18892 -35.34304 -33.71259 -33.43834 -32.12748 -31.02697 -30.04178 -28.43729 -26.31108 -25.81698 -24.86829 -24.36937 -24.03073 -22.89809 -21.71999 -20.93449 -19.79664 -19.33949 -19.06487 -18.43088 -18.02286 -17.42660 -16.83518 -16.73063 -16.55191 -16.25981 -15.76375 -15.55229 -15.43891 -15.42785 -14.68723 -14.56204 -14.09734 -13.93800 -13.76469 -13.71102 -13.48357 -13.33707 -13.15444 -13.07642 -12.90297 -12.80284 -12.66759 -12.59268 -12.20393 -12.06463 -12.00420 -11.86983 -11.64060 -11.59015 -11.32452 -10.85808 -10.71541 -10.21460 -9.61597 -9.22529 -8.97323 -7.89602 -5.18779 -0.80848 -0.10782 0.67455 1.38831 1.50353 1.52027 1.53448 1.59349 1.84313 2.29821 2.53569 2.59854 2.97010 3.09383 3.43040 3.45606 3.71015 3.75063 3.77536 3.86731 4.02183 4.12130 4.24732 4.31937 4.35620 4.42345 4.59745 4.64506 4.67771 4.71348 4.74139 4.77887 4.85744 4.88165 5.02763 5.08951 5.14707 5.18375 5.29713 5.45617 5.53906 5.56705 5.58261 5.72051 6.28383 6.31008 6.37824 7.12295 7.26880 7.36874 8.13197 8.36073 9.34216 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002742 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.082308 B =10208.156241 C =10913.836187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.103 0.897 4 C -0.127 4.127 5 C 0.174 3.826 6 H 0.061 0.939 7 N -0.740 5.740 8 C -0.232 4.232 9 H 0.085 0.915 10 C -0.082 4.082 11 N -0.976 5.976 12 Si 0.972 3.028 13 H -0.274 1.274 14 H -0.304 1.304 15 H -0.276 1.276 16 C -0.143 4.143 17 C 0.102 3.898 18 N -0.594 5.594 19 C 0.562 3.438 20 O -0.549 6.549 21 C -0.134 4.134 22 C -0.008 4.008 23 C -0.133 4.133 24 C 0.088 3.912 25 N -0.405 5.405 26 C 0.328 3.672 27 O -0.421 6.421 28 N -0.289 5.289 29 N -0.318 5.318 30 C 0.225 3.775 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.367 0.633 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.194 0.806 43 H 0.221 0.779 44 H 0.218 0.782 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 4.413 27.949 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.120 0.880 4 C -0.166 4.166 5 C 0.066 3.934 6 H 0.079 0.921 7 N -0.379 5.379 8 C -0.364 4.364 9 H 0.103 0.897 10 C -0.274 4.274 11 N -0.627 5.627 12 Si 0.802 3.198 13 H -0.200 1.200 14 H -0.231 1.231 15 H -0.203 1.203 16 C -0.183 4.183 17 C -0.020 4.020 18 N -0.326 5.326 19 C 0.350 3.650 20 O -0.428 6.428 21 C -0.142 4.142 22 C -0.032 4.032 23 C -0.153 4.153 24 C -0.032 4.032 25 N -0.098 5.098 26 C 0.026 3.974 27 O -0.224 6.224 28 N -0.137 5.137 29 N -0.163 5.163 30 C -0.028 4.028 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.198 0.802 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.211 0.789 43 H 0.237 0.763 44 H 0.235 0.765 45 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -0.094 4.250 27.553 27.879 hybrid contribution 1.444 -0.982 -0.764 1.906 sum 1.349 3.268 26.788 27.021 Atomic orbital electron populations 1.22068 0.93331 1.02040 1.00912 1.21203 0.94993 0.95850 0.82547 0.87957 1.22116 0.96365 1.00141 0.97975 1.20442 0.91806 0.95174 0.85991 0.92127 1.42714 1.12169 1.54801 1.28219 1.19645 0.89956 1.21028 1.05747 0.89669 1.25595 1.02075 1.00623 0.99068 1.69835 1.37333 1.35606 1.19909 0.85223 0.80214 0.77404 0.77000 1.19988 1.23075 1.20256 1.22477 1.01355 0.98798 0.95713 1.22423 0.78414 1.02526 0.98647 1.48102 1.08298 1.56835 1.19382 1.17903 0.85820 0.78087 0.83171 1.90907 1.16572 1.55918 1.79439 1.20035 0.98494 0.96941 0.98698 1.22591 0.89533 0.97762 0.93319 1.21513 1.03159 0.95087 0.95563 1.22813 0.83639 0.96373 1.00424 1.44188 1.20583 1.25074 1.19947 1.21716 0.90224 0.92085 0.93392 1.84992 1.75663 1.36156 1.25597 1.74502 1.21243 1.17087 1.00886 1.74799 1.14939 1.06116 1.20428 1.22833 0.94276 0.98585 0.87153 0.91583 0.92645 0.93999 0.90964 0.94262 0.80194 0.94334 0.90707 0.95011 0.86942 0.87447 0.78920 0.76259 0.76541 0.70803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.58 71.98 0.55 -3.21 16 2 C 0.16 4.22 3.48 44.83 0.16 4.37 16 3 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.13 -4.19 4.81 30.53 0.15 -4.04 16 5 C 0.17 6.20 2.73 45.01 0.12 6.33 16 6 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 7 N -0.74 -35.91 5.12 -322.81 -1.65 -37.56 16 8 C -0.23 -12.16 9.93 84.04 0.83 -11.33 16 9 H 0.09 4.12 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 11 N -0.98 -59.69 13.06 21.65 0.28 -59.40 16 12 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 16 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 17 C 0.10 1.93 4.90 86.36 0.42 2.35 16 18 N -0.59 -14.72 2.98 -799.89 -2.38 -17.10 16 19 C 0.56 16.14 7.29 86.60 0.63 16.77 16 20 O -0.55 -20.28 12.36 -4.14 -0.05 -20.33 16 21 C -0.13 -3.02 5.37 -18.61 -0.10 -3.12 16 22 C -0.01 -0.08 7.47 22.83 0.17 0.09 16 23 C -0.13 -0.38 9.91 21.94 0.22 -0.16 16 24 C 0.09 0.59 10.93 83.26 0.91 1.50 16 25 N -0.41 -7.66 2.97 -462.36 -1.37 -9.03 16 26 C 0.33 7.29 9.41 179.66 1.69 8.98 16 27 O -0.42 -5.50 13.65 -90.36 -1.23 -6.73 16 28 N -0.29 -9.40 12.20 -173.35 -2.11 -11.52 16 29 N -0.32 -11.57 12.26 -51.50 -0.63 -12.20 16 30 C 0.22 6.28 7.82 135.67 1.06 7.34 16 31 H 0.07 2.00 6.75 -2.38 -0.02 1.99 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.51 6.74 -2.39 -0.02 1.49 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.36 8.12 -2.39 -0.02 1.34 16 41 H 0.11 1.50 4.58 -2.38 -0.01 1.49 16 42 H 0.19 0.62 6.42 -2.91 -0.02 0.60 16 43 H 0.22 -1.67 8.06 -2.91 -0.02 -1.69 16 44 H 0.22 -0.56 8.06 -2.91 -0.02 -0.58 16 45 H 0.43 0.69 9.06 -74.06 -0.67 0.02 16 Total: -1.00 -90.78 366.92 -0.01 -90.79 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.33 Total: 18.82 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.45 Total: 17.67 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -7.87 Total: -146.81 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.28 Total: -27.06 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -90.78 -0.01 -90.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044815454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.275 kcal (2) G-P(sol) polarization free energy of solvation -90.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds