Wall clock time and date at job start Wed Apr 1 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58482 * 2 1 4 4 C 1.53186 * 109.59111 * 239.71509 * 2 1 3 5 5 C 1.53032 * 109.31736 * 185.57742 * 4 2 1 6 6 H 1.09004 * 109.45885 * 301.36190 * 5 4 2 7 7 N 1.46500 * 109.46472 * 181.38635 * 5 4 2 8 8 C 1.36930 * 120.00276 * 154.97311 * 7 5 4 9 9 H 1.08004 * 120.00162 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00095 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99793 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99956 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47369 * 89.99715 * 12 10 8 14 14 H 1.48499 * 109.47077 * 330.00097 * 12 10 8 15 15 H 1.48502 * 109.47420 * 210.00017 * 12 10 8 16 16 C 1.53043 * 109.52580 * 61.36909 * 5 4 2 17 17 C 1.53188 * 109.31631 * 298.61668 * 16 5 4 18 18 N 1.46926 * 109.58650 * 120.42320 * 2 1 3 19 19 C 1.34780 * 120.63197 * 353.42144 * 18 2 1 20 20 O 1.21670 * 119.99773 * 3.59737 * 19 18 2 21 21 C 1.46902 * 120.00152 * 183.59918 * 19 18 2 22 22 C 1.36378 * 126.76230 * 36.07185 * 21 19 18 23 23 N 1.35454 * 109.77379 * 179.83094 * 22 21 19 24 24 H 0.96999 * 124.79434 * 180.18950 * 23 22 21 25 25 C 1.38054 * 110.41031 * 0.45152 * 23 22 21 26 26 C 1.39109 * 133.15210 * 179.71102 * 25 23 22 27 27 C 1.37761 * 119.96507 * 180.02562 * 26 25 23 28 28 C 1.38950 * 120.60463 * 359.97438 * 27 26 25 29 29 F 1.35096 * 119.87451 * 179.97438 * 28 27 26 30 30 C 1.37943 * 120.24943 * 0.02562 * 28 27 26 31 31 C 1.39287 * 119.65342 * 359.97438 * 30 28 27 32 32 H 1.09004 * 109.47017 * 184.69123 * 1 2 3 33 33 H 1.08998 * 109.47152 * 304.68998 * 1 2 3 34 34 H 1.09003 * 109.47019 * 64.69059 * 1 2 3 35 35 H 1.09007 * 109.49488 * 65.62204 * 4 2 1 36 36 H 1.09003 * 109.49633 * 305.53244 * 4 2 1 37 37 H 0.97004 * 119.99498 * 334.97142 * 7 5 4 38 38 H 0.97007 * 119.99546 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.49539 * 58.58817 * 16 5 4 40 40 H 1.09005 * 109.49730 * 178.68159 * 16 5 4 41 41 H 1.09001 * 109.59980 * 294.87314 * 17 16 5 42 42 H 1.08999 * 109.70903 * 174.50683 * 17 16 5 43 43 H 1.08003 * 125.11717 * 359.97438 * 22 21 19 44 44 H 1.08002 * 120.02149 * 0.02562 * 26 25 23 45 45 H 1.07997 * 119.69751 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.17873 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5675 -0.8465 -1.1711 6 1 4.0061 0.1488 -1.0988 7 7 4.0653 -1.5127 -2.3771 8 6 5.3495 -1.2947 -2.7992 9 1 5.9955 -0.6313 -2.2432 10 6 5.8214 -1.9265 -3.9417 11 7 7.0557 -1.7165 -4.3476 12 14 4.7041 -3.0734 -4.9037 13 1 3.9699 -2.2985 -5.9361 14 1 3.7324 -3.7093 -3.9782 15 1 5.5216 -4.1241 -5.5617 16 6 3.9566 -1.6659 0.0615 17 6 3.4650 -0.9485 1.3227 18 7 2.0225 -0.7010 1.1936 19 6 1.1673 -1.1096 2.1519 20 8 -0.0307 -0.9577 2.0031 21 6 1.6815 -1.7384 3.3759 22 6 2.8312 -1.4192 4.0364 23 7 2.9699 -2.2133 5.1250 24 1 3.7094 -2.1701 5.7511 25 6 1.9128 -3.0968 5.2141 26 6 1.5869 -4.1023 6.1186 27 6 0.4356 -4.8383 5.9438 28 6 -0.4088 -4.5864 4.8694 29 9 -1.5339 -5.3175 4.7120 30 6 -0.1020 -3.5934 3.9624 31 6 1.0594 -2.8429 4.1289 32 1 -0.3633 -1.0243 0.0841 33 1 -0.3633 0.5849 0.8450 34 1 -0.3633 0.4393 -0.9291 35 1 1.7660 -0.1641 -2.1370 36 1 1.6030 -1.7237 -1.2934 37 1 3.4850 -2.1083 -2.8767 38 1 7.3855 -2.1583 -5.1457 39 1 3.4979 -2.6528 0.0019 40 1 5.0409 -1.7699 0.1018 41 1 3.9902 0.0004 1.4318 42 1 3.6520 -1.5722 2.1968 43 1 3.5255 -0.6476 3.7380 44 1 2.2362 -4.3059 6.9573 45 1 0.1870 -5.6181 6.6484 46 1 -0.7589 -3.3989 3.1275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044883027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:41 Heat of formation + Delta-G solvation = 14.750986 kcal Electronic energy + Delta-G solvation = -30267.672866 eV Core-core repulsion = 26073.316910 eV Total energy + Delta-G solvation = -4194.355956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.96924 -41.86844 -40.07822 -37.34918 -37.06320 -34.62961 -33.29619 -31.98010 -31.93470 -29.94495 -29.42838 -29.11922 -27.17177 -24.53690 -23.71466 -23.21029 -22.72634 -22.15104 -21.13296 -20.07981 -19.18473 -18.14355 -17.58827 -17.43818 -16.87735 -16.16236 -15.82677 -15.79110 -15.43726 -15.33688 -14.85389 -14.49431 -14.24398 -14.15184 -13.86537 -13.59099 -13.51405 -13.31341 -13.20106 -12.94829 -12.75075 -12.50348 -12.24061 -12.12868 -11.84531 -11.71309 -11.43204 -11.26549 -11.02058 -10.93677 -10.82829 -10.53444 -10.28150 -10.11569 -9.90694 -9.62463 -9.02633 -8.95813 -8.54783 -8.45169 -8.08016 -7.30945 -5.80976 -3.16485 0.56890 1.04569 1.79110 2.57690 2.91996 3.18626 3.36225 3.39998 3.44172 3.49748 3.99018 4.25229 4.43883 4.48712 4.56559 4.71251 4.93985 4.96117 4.99362 5.02080 5.12489 5.25593 5.33398 5.36417 5.42487 5.48750 5.56416 5.62869 5.74078 5.83189 5.85089 5.91021 5.94558 6.04472 6.06189 6.17722 6.20840 6.30175 6.37003 6.38499 6.48515 6.67867 6.70103 6.82761 6.94728 6.97703 7.54698 7.94516 8.32959 8.38337 9.16724 9.89814 10.09763 11.37257 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.002727 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.378852 B =10264.962209 C =10422.664534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.150 3.850 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.096 3.904 18 N -0.599 5.599 19 C 0.588 3.412 20 O -0.536 6.536 21 C -0.218 4.218 22 C 0.109 3.891 23 N -0.578 5.578 24 H 0.422 0.578 25 C 0.077 3.923 26 C -0.095 4.095 27 C -0.133 4.133 28 C 0.077 3.923 29 F -0.141 7.141 30 C -0.099 4.099 31 C -0.039 4.039 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.187 0.813 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -0.612 23.843 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.203 1.203 15 H -0.218 1.218 16 C -0.192 4.192 17 C -0.027 4.027 18 N -0.332 5.332 19 C 0.377 3.623 20 O -0.415 6.415 21 C -0.229 4.229 22 C -0.023 4.023 23 N -0.179 5.179 24 H 0.260 0.740 25 C -0.029 4.029 26 C -0.115 4.115 27 C -0.153 4.153 28 C 0.056 3.944 29 F -0.119 7.119 30 C -0.118 4.118 31 C -0.044 4.044 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.194 0.806 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.204 0.796 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.499 -0.453 23.762 25.982 hybrid contribution -0.220 -1.060 -0.582 1.229 sum -10.719 -1.513 23.180 25.583 Atomic orbital electron populations 1.22208 0.92749 1.03800 1.00399 1.21276 0.95508 0.94956 0.83555 0.90924 1.22348 0.97446 1.01067 0.97001 1.20139 0.90843 0.95283 0.86320 0.92566 1.42804 1.13176 1.54950 1.28071 1.19054 0.87706 1.23306 1.07275 0.89198 1.24667 0.96100 1.00096 0.98220 1.69701 1.15118 1.47200 1.26147 0.86565 0.80361 0.81275 0.80418 1.21047 1.20332 1.21776 1.22625 1.01974 0.99908 0.94652 1.22169 0.79716 1.00534 1.00252 1.48067 1.07546 1.57446 1.20153 1.17239 0.85740 0.77522 0.81789 1.90840 1.15273 1.56266 1.79117 1.20092 0.98157 1.03928 1.00703 1.22344 0.97020 0.95702 0.87266 1.41534 1.21773 1.30024 1.24575 0.73985 1.18223 0.90297 0.95796 0.98571 1.19826 0.97773 0.95005 0.98899 1.20765 0.94631 1.01710 0.98224 1.17342 0.85348 0.94138 0.97524 1.91493 1.49064 1.75840 1.95525 1.20493 0.97004 0.94528 0.99789 1.18402 0.94651 0.96657 0.94692 0.91112 0.91245 0.93980 0.90538 0.91854 0.80628 0.93052 0.92252 0.90273 0.91310 0.89739 0.79638 0.84930 0.84276 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 7.59 37.16 0.28 -1.57 16 2 C 0.15 2.04 3.49 -67.60 -0.24 1.80 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.16 4.84 -26.62 -0.13 -2.29 16 5 C 0.18 3.28 2.73 -67.89 -0.19 3.10 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -17.03 4.92 -53.39 -0.26 -17.30 16 8 C -0.24 -6.61 10.41 -15.06 -0.16 -6.76 16 9 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 10 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 12 Si 0.88 21.94 27.74 -169.99 -4.71 17.22 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 17 C 0.10 1.12 5.37 -3.71 -0.02 1.10 16 18 N -0.60 -7.82 2.97 -166.67 -0.50 -8.32 16 19 C 0.59 8.25 7.52 -12.75 -0.10 8.16 16 20 O -0.54 -8.84 12.49 5.22 0.07 -8.78 16 21 C -0.22 -2.58 5.56 -103.31 -0.57 -3.15 16 22 C 0.11 0.87 9.40 -16.62 -0.16 0.71 16 23 N -0.58 -3.79 5.99 -10.47 -0.06 -3.85 16 24 H 0.42 1.23 8.96 -40.82 -0.37 0.86 16 25 C 0.08 0.70 7.26 -83.93 -0.61 0.10 16 26 C -0.09 -0.72 10.07 -39.43 -0.40 -1.12 16 27 C -0.13 -1.15 9.99 -39.49 -0.39 -1.54 16 28 C 0.08 0.86 7.29 -39.43 -0.29 0.57 16 29 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 30 C -0.10 -1.24 10.06 -39.30 -0.40 -1.63 16 31 C -0.04 -0.47 6.35 -104.95 -0.67 -1.14 16 32 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 33 H 0.07 1.00 6.77 -51.93 -0.35 0.65 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.36 8.28 5.66 -40.82 -0.23 8.04 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.82 4.36 -51.93 -0.23 0.59 16 43 H 0.19 0.94 6.77 -52.48 -0.36 0.59 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -34.18 370.02 -9.47 -43.65 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.12 Total: 7.60 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.27 Total: -6.14 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.05 Total: -57.48 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.18 -9.47 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.398 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds