Wall clock time and date at job start Wed Apr 1 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58482 * 2 1 4 4 C 1.53186 * 109.59111 * 239.71509 * 2 1 3 5 5 C 1.53032 * 109.31736 * 185.57742 * 4 2 1 6 6 H 1.09004 * 109.45885 * 301.36190 * 5 4 2 7 7 N 1.46500 * 109.46472 * 181.38635 * 5 4 2 8 8 C 1.36930 * 120.00276 * 154.97311 * 7 5 4 9 9 H 1.08004 * 120.00162 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00095 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99793 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99956 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47369 * 89.99715 * 12 10 8 14 14 H 1.48499 * 109.47077 * 330.00097 * 12 10 8 15 15 H 1.48502 * 109.47420 * 210.00017 * 12 10 8 16 16 C 1.53043 * 109.52580 * 61.36909 * 5 4 2 17 17 C 1.53188 * 109.31631 * 298.61668 * 16 5 4 18 18 N 1.46926 * 109.58650 * 120.42320 * 2 1 3 19 19 C 1.34780 * 120.63197 * 353.42144 * 18 2 1 20 20 O 1.21670 * 119.99773 * 3.59737 * 19 18 2 21 21 C 1.46902 * 120.00152 * 183.59918 * 19 18 2 22 22 C 1.36378 * 126.76230 * 36.07185 * 21 19 18 23 23 N 1.35454 * 109.77379 * 179.83094 * 22 21 19 24 24 H 0.96999 * 124.79434 * 180.18950 * 23 22 21 25 25 C 1.38054 * 110.41031 * 0.45152 * 23 22 21 26 26 C 1.39109 * 133.15210 * 179.71102 * 25 23 22 27 27 C 1.37761 * 119.96507 * 180.02562 * 26 25 23 28 28 C 1.38950 * 120.60463 * 359.97438 * 27 26 25 29 29 F 1.35096 * 119.87451 * 179.97438 * 28 27 26 30 30 C 1.37943 * 120.24943 * 0.02562 * 28 27 26 31 31 C 1.39287 * 119.65342 * 359.97438 * 30 28 27 32 32 H 1.09004 * 109.47017 * 184.69123 * 1 2 3 33 33 H 1.08998 * 109.47152 * 304.68998 * 1 2 3 34 34 H 1.09003 * 109.47019 * 64.69059 * 1 2 3 35 35 H 1.09007 * 109.49488 * 65.62204 * 4 2 1 36 36 H 1.09003 * 109.49633 * 305.53244 * 4 2 1 37 37 H 0.97004 * 119.99498 * 334.97142 * 7 5 4 38 38 H 0.97007 * 119.99546 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.49539 * 58.58817 * 16 5 4 40 40 H 1.09005 * 109.49730 * 178.68159 * 16 5 4 41 41 H 1.09001 * 109.59980 * 294.87314 * 17 16 5 42 42 H 1.08999 * 109.70903 * 174.50683 * 17 16 5 43 43 H 1.08003 * 125.11717 * 359.97438 * 22 21 19 44 44 H 1.08002 * 120.02149 * 0.02562 * 26 25 23 45 45 H 1.07997 * 119.69751 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.17873 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5675 -0.8465 -1.1711 6 1 4.0061 0.1488 -1.0988 7 7 4.0653 -1.5127 -2.3771 8 6 5.3495 -1.2947 -2.7992 9 1 5.9955 -0.6313 -2.2432 10 6 5.8214 -1.9265 -3.9417 11 7 7.0557 -1.7165 -4.3476 12 14 4.7041 -3.0734 -4.9037 13 1 3.9699 -2.2985 -5.9361 14 1 3.7324 -3.7093 -3.9782 15 1 5.5216 -4.1241 -5.5617 16 6 3.9566 -1.6659 0.0615 17 6 3.4650 -0.9485 1.3227 18 7 2.0225 -0.7010 1.1936 19 6 1.1673 -1.1096 2.1519 20 8 -0.0307 -0.9577 2.0031 21 6 1.6815 -1.7384 3.3759 22 6 2.8312 -1.4192 4.0364 23 7 2.9699 -2.2133 5.1250 24 1 3.7094 -2.1701 5.7511 25 6 1.9128 -3.0968 5.2141 26 6 1.5869 -4.1023 6.1186 27 6 0.4356 -4.8383 5.9438 28 6 -0.4088 -4.5864 4.8694 29 9 -1.5339 -5.3175 4.7120 30 6 -0.1020 -3.5934 3.9624 31 6 1.0594 -2.8429 4.1289 32 1 -0.3633 -1.0243 0.0841 33 1 -0.3633 0.5849 0.8450 34 1 -0.3633 0.4393 -0.9291 35 1 1.7660 -0.1641 -2.1370 36 1 1.6030 -1.7237 -1.2934 37 1 3.4850 -2.1083 -2.8767 38 1 7.3855 -2.1583 -5.1457 39 1 3.4979 -2.6528 0.0019 40 1 5.0409 -1.7699 0.1018 41 1 3.9902 0.0004 1.4318 42 1 3.6520 -1.5722 2.1968 43 1 3.5255 -0.6476 3.7380 44 1 2.2362 -4.3059 6.9573 45 1 0.1870 -5.6181 6.6484 46 1 -0.7589 -3.3989 3.1275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044883027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:40 Heat of formation + Delta-G solvation = -7.285470 kcal Electronic energy + Delta-G solvation = -30268.628438 eV Core-core repulsion = 26073.316910 eV Total energy + Delta-G solvation = -4195.311528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.85760 -42.60568 -41.12898 -38.64159 -37.77258 -36.22118 -34.33583 -33.78584 -32.79251 -31.52971 -30.19087 -29.95962 -28.41711 -25.97590 -24.61222 -24.52052 -23.76879 -22.94960 -22.29532 -21.47184 -20.14319 -19.55433 -18.86027 -18.30419 -17.69418 -17.03986 -16.87562 -16.71053 -16.66742 -16.38354 -16.19678 -15.89254 -15.36495 -15.10855 -14.92571 -14.87226 -14.59718 -14.48787 -14.29697 -14.05692 -13.75453 -13.69103 -13.61580 -13.31738 -13.09880 -12.99134 -12.71577 -12.55484 -12.35489 -12.13249 -12.05741 -11.96403 -11.89161 -11.76404 -11.36071 -10.94684 -10.84297 -10.11697 -9.55100 -9.32537 -9.24537 -8.82487 -8.00839 -5.32754 -0.15660 0.29529 1.00134 1.38614 1.39172 1.46348 1.87970 2.03358 2.29974 2.48821 2.68292 3.23261 3.30959 3.49687 3.58371 3.63005 3.84696 3.89370 4.02698 4.05394 4.08506 4.25248 4.28205 4.32642 4.38506 4.51369 4.60349 4.63116 4.63699 4.67520 4.77335 4.88205 4.94638 5.02128 5.06505 5.13705 5.17559 5.18763 5.28784 5.40889 5.42968 5.47594 5.51562 5.76027 5.80340 5.94539 6.23855 6.51113 6.53896 7.09469 7.30681 7.86907 8.04509 9.20504 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.002727 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.378852 B =10264.962209 C =10422.664534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.153 3.847 3 H 0.092 0.908 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.057 0.943 7 N -0.754 5.754 8 C -0.219 4.219 9 H 0.067 0.933 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.946 3.054 13 H -0.281 1.281 14 H -0.260 1.260 15 H -0.298 1.298 16 C -0.143 4.143 17 C 0.105 3.895 18 N -0.600 5.600 19 C 0.585 3.415 20 O -0.573 6.573 21 C -0.267 4.267 22 C 0.143 3.857 23 N -0.554 5.554 24 H 0.445 0.555 25 C 0.073 3.927 26 C -0.074 4.074 27 C -0.137 4.137 28 C 0.064 3.936 29 F -0.152 7.152 30 C -0.133 4.133 31 C -0.066 4.066 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.361 0.639 38 H 0.256 0.744 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.223 0.777 44 H 0.177 0.823 45 H 0.167 0.833 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -0.524 26.879 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 H 0.110 0.890 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.075 0.925 7 N -0.397 5.397 8 C -0.350 4.350 9 H 0.085 0.915 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.775 3.225 13 H -0.207 1.207 14 H -0.185 1.185 15 H -0.225 1.225 16 C -0.183 4.183 17 C -0.018 4.018 18 N -0.332 5.332 19 C 0.376 3.624 20 O -0.454 6.454 21 C -0.277 4.277 22 C 0.009 3.991 23 N -0.157 5.157 24 H 0.287 0.713 25 C -0.033 4.033 26 C -0.094 4.094 27 C -0.156 4.156 28 C 0.044 3.956 29 F -0.131 7.131 30 C -0.153 4.153 31 C -0.070 4.070 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.193 0.807 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.240 0.760 44 H 0.194 0.806 45 H 0.184 0.816 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.752 -0.366 26.877 28.594 hybrid contribution -0.448 -1.036 -1.407 1.804 sum -10.199 -1.401 25.470 27.472 Atomic orbital electron populations 1.22033 0.93034 1.02229 1.00672 1.21241 0.95188 0.95633 0.82967 0.89008 1.22224 0.95527 1.00757 0.98323 1.20409 0.92204 0.95103 0.85384 0.92541 1.42898 1.11661 1.55327 1.29768 1.19051 0.88831 1.21091 1.06066 0.91547 1.25377 0.97494 1.02618 0.99890 1.69858 1.17229 1.49271 1.27024 0.85535 0.78673 0.79146 0.79147 1.20716 1.18494 1.22514 1.22432 1.01134 0.99165 0.95599 1.22239 0.78810 1.01938 0.98775 1.48092 1.08070 1.57271 1.19752 1.17604 0.85336 0.76914 0.82546 1.90819 1.16883 1.57600 1.80104 1.19990 1.00623 1.05800 1.01317 1.22768 0.95475 0.94827 0.86051 1.41525 1.21471 1.28443 1.24238 0.71262 1.18379 0.90462 0.96523 0.97957 1.20298 0.97223 0.92958 0.98929 1.21092 0.94423 1.02543 0.97582 1.17654 0.85592 0.93956 0.98419 1.91455 1.49867 1.76062 1.95705 1.20409 0.98016 0.96635 1.00232 1.18652 0.95070 0.97127 0.96195 0.93513 0.91937 0.92744 0.90378 0.93103 0.80677 0.93503 0.93851 0.91410 0.88412 0.87270 0.76030 0.80610 0.81583 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 7.59 71.98 0.55 -2.84 16 2 C 0.15 3.97 3.49 44.97 0.16 4.13 16 3 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.13 -3.90 4.84 30.67 0.15 -3.75 16 5 C 0.18 6.13 2.73 45.02 0.12 6.25 16 6 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 7 N -0.75 -33.91 4.92 -322.82 -1.59 -35.50 16 8 C -0.22 -11.95 10.41 84.04 0.87 -11.07 16 9 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 10 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 11 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 12 Si 0.95 45.66 27.74 68.60 1.90 47.56 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 14 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 16 C -0.14 -4.25 5.66 30.67 0.17 -4.08 16 17 C 0.10 2.12 5.37 86.36 0.46 2.58 16 18 N -0.60 -14.76 2.97 -799.46 -2.38 -17.13 16 19 C 0.58 16.24 7.52 86.51 0.65 16.89 16 20 O -0.57 -19.70 12.49 -4.25 -0.05 -19.75 16 21 C -0.27 -5.94 5.56 -19.02 -0.11 -6.05 16 22 C 0.14 1.71 9.40 83.70 0.79 2.50 16 23 N -0.55 -4.74 5.99 -187.04 -1.12 -5.86 16 24 H 0.44 0.02 8.96 -92.71 -0.83 -0.82 16 25 C 0.07 1.12 7.26 38.89 0.28 1.40 16 26 C -0.07 -0.84 10.07 22.37 0.23 -0.61 16 27 C -0.14 -2.05 9.99 22.33 0.22 -1.83 16 28 C 0.06 1.46 7.29 22.37 0.16 1.62 16 29 F -0.15 -3.83 17.26 44.97 0.78 -3.05 16 30 C -0.13 -3.57 10.06 22.45 0.23 -3.34 16 31 C -0.07 -1.55 6.35 -20.08 -0.13 -1.68 16 32 H 0.05 1.51 6.71 -2.38 -0.02 1.50 16 33 H 0.06 1.82 6.77 -2.39 -0.02 1.81 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.36 16.20 5.66 -92.71 -0.52 15.67 16 38 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.11 1.69 4.36 -2.39 -0.01 1.68 16 43 H 0.22 0.96 6.77 -2.91 -0.02 0.94 16 44 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 45 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 46 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -79.45 370.02 2.74 -76.70 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.38 Total: 21.58 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.28 Total: -3.03 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.78 Total: -120.02 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -79.45 2.74 -76.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.418 kcal (2) G-P(sol) polarization free energy of solvation -79.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds