Wall clock time and date at job start Wed Apr 1 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.69952 * 2 1 4 4 C 1.53191 * 109.58720 * 120.36344 * 2 1 3 5 5 C 1.53039 * 109.31281 * 174.42358 * 4 2 1 6 6 H 1.08997 * 109.45891 * 178.62465 * 5 4 2 7 7 N 1.46500 * 109.46248 * 58.65023 * 5 4 2 8 8 C 1.36932 * 119.99946 * 155.00182 * 7 5 4 9 9 H 1.07997 * 120.00231 * 359.72476 * 8 7 5 10 10 C 1.38815 * 120.00072 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99868 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00107 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47286 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47103 * 120.00388 * 12 10 8 15 15 H 1.48499 * 109.46897 * 240.00059 * 12 10 8 16 16 C 1.53040 * 109.53528 * 298.63176 * 5 4 2 17 17 C 1.53195 * 109.31448 * 61.36489 * 16 5 4 18 18 N 1.46924 * 109.58356 * 239.64986 * 2 1 3 19 19 C 1.34779 * 120.63238 * 6.62355 * 18 2 1 20 20 O 1.21672 * 119.99963 * 5.58460 * 19 18 2 21 21 C 1.46899 * 120.00109 * 185.58279 * 19 18 2 22 22 C 1.36391 * 126.76460 * 29.09507 * 21 19 18 23 23 N 1.35452 * 109.77014 * 179.82878 * 22 21 19 24 24 H 0.96999 * 124.78771 * 180.18223 * 23 22 21 25 25 C 1.38046 * 110.41809 * 0.45522 * 23 22 21 26 26 C 1.39111 * 133.15676 * 179.70878 * 25 23 22 27 27 C 1.37762 * 119.96608 * 180.02562 * 26 25 23 28 28 C 1.38937 * 120.60613 * 0.02562 * 27 26 25 29 29 F 1.35106 * 119.87497 * 179.97438 * 28 27 26 30 30 C 1.37946 * 120.25199 * 359.95386 * 28 27 26 31 31 C 1.39285 * 119.64999 * 0.04787 * 30 28 27 32 32 H 1.08997 * 109.46606 * 292.67191 * 1 2 3 33 33 H 1.08998 * 109.46930 * 52.66999 * 1 2 3 34 34 H 1.08996 * 109.47089 * 172.67629 * 1 2 3 35 35 H 1.08992 * 109.50099 * 54.46747 * 4 2 1 36 36 H 1.09005 * 109.49087 * 294.36889 * 4 2 1 37 37 H 0.97001 * 119.99558 * 335.00340 * 7 5 4 38 38 H 0.96998 * 119.99847 * 180.02562 * 11 10 8 39 39 H 1.08995 * 109.49894 * 181.31687 * 16 5 4 40 40 H 1.09006 * 109.49476 * 301.41632 * 16 5 4 41 41 H 1.09002 * 109.58665 * 185.57805 * 17 16 5 42 42 H 1.08995 * 109.70103 * 65.22619 * 17 16 5 43 43 H 1.07995 * 125.10895 * 359.97438 * 22 21 19 44 44 H 1.08005 * 120.01792 * 0.04329 * 26 25 23 45 45 H 1.08004 * 119.69392 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.17669 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8481 1.1700 6 1 3.9378 -1.3452 2.0666 7 7 4.1571 0.4897 1.0749 8 6 5.4415 0.7036 1.4989 9 1 6.0183 -0.1129 1.9075 10 6 6.0003 1.9710 1.4083 11 7 5.2954 2.9673 0.9153 12 14 7.7526 2.2627 1.9860 13 1 8.3242 0.9903 2.4952 14 1 8.5728 2.7550 0.8502 15 1 7.7535 3.2750 3.0725 16 6 3.9569 -1.6657 -0.0637 17 6 3.4650 -0.9468 -1.3239 18 7 2.0225 -0.6994 -1.1945 19 6 1.1674 -1.1060 -2.1537 20 8 -0.0100 -0.8068 -2.0857 21 6 1.6568 -1.9104 -3.2812 22 6 2.7149 -2.7710 -3.2715 23 7 2.8594 -3.3333 -4.4953 24 1 3.5430 -3.9802 -4.7299 25 6 1.9000 -2.8513 -5.3631 26 6 1.6199 -3.0967 -6.7034 27 6 0.5701 -2.4490 -7.3167 28 6 -0.2161 -1.5484 -6.6088 29 9 -1.2418 -0.9211 -7.2252 30 6 0.0462 -1.2926 -5.2789 31 6 1.1051 -1.9415 -4.6483 32 1 -0.3632 0.3961 0.9483 33 1 -0.3633 0.6232 -0.8171 34 1 -0.3633 -1.0192 -0.1310 35 1 1.6031 -1.7254 1.2912 36 1 1.7661 -0.1670 2.1368 37 1 3.6376 1.2239 0.7116 38 1 5.6861 3.8529 0.8516 39 1 5.0412 -1.7696 -0.1040 40 1 3.4982 -2.6529 -0.0055 41 1 3.6518 -1.5716 -2.1974 42 1 3.9901 0.0019 -1.4343 43 1 3.3417 -2.9751 -2.4161 44 1 2.2250 -3.7948 -7.2628 45 1 0.3568 -2.6425 -8.3577 46 1 -0.5660 -0.5926 -4.7297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044883028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:44 Heat of formation + Delta-G solvation = 1.009883 kcal Electronic energy + Delta-G solvation = -30642.981655 eV Core-core repulsion = 26448.029840 eV Total energy + Delta-G solvation = -4194.951815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.84257 -42.64851 -41.14437 -38.67136 -37.78829 -35.80520 -34.35252 -33.62221 -32.77301 -30.87057 -30.18084 -29.96748 -28.41795 -25.79162 -25.36193 -24.53028 -23.75157 -23.06738 -22.54652 -20.89791 -19.72312 -19.21056 -18.81453 -18.33072 -17.76837 -17.13043 -16.96039 -16.64756 -16.59450 -16.38819 -15.84611 -15.66656 -15.48895 -15.23554 -14.98511 -14.77417 -14.57443 -14.43473 -14.19393 -14.09422 -13.72573 -13.62436 -13.37713 -13.26528 -12.89938 -12.85448 -12.61026 -12.45436 -12.36351 -12.03974 -12.00651 -11.94333 -11.79500 -11.56166 -11.34547 -10.90298 -10.82067 -10.12334 -9.48084 -9.26981 -8.92490 -8.82622 -7.87733 -5.14928 -0.17324 0.29983 0.95186 1.49928 1.51215 1.60162 1.90699 2.07871 2.31926 2.60805 2.70087 3.23428 3.46379 3.58334 3.63970 3.80036 3.92266 3.96238 4.03873 4.06247 4.12042 4.26584 4.30342 4.33090 4.40548 4.52696 4.56110 4.63401 4.72136 4.80548 4.88410 4.95157 4.96466 5.10595 5.13894 5.18343 5.19670 5.29829 5.30613 5.39877 5.42059 5.44822 5.47378 5.61156 5.80201 5.94739 6.34008 6.51078 6.60243 7.32157 7.40727 8.18223 8.40246 9.36001 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.002841 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.231125 B = 9854.526237 C =10379.039020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.149 3.851 3 H 0.045 0.955 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.224 4.224 9 H 0.081 0.919 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.966 3.034 13 H -0.262 1.262 14 H -0.299 1.299 15 H -0.303 1.303 16 C -0.141 4.141 17 C 0.100 3.900 18 N -0.594 5.594 19 C 0.581 3.419 20 O -0.576 6.576 21 C -0.265 4.265 22 C 0.137 3.863 23 N -0.552 5.552 24 H 0.445 0.555 25 C 0.074 3.926 26 C -0.073 4.073 27 C -0.134 4.134 28 C 0.065 3.935 29 F -0.151 7.151 30 C -0.133 4.133 31 C -0.066 4.066 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.371 0.629 38 H 0.246 0.754 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.223 0.777 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -19.759 -14.338 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.045 3.955 3 H 0.063 0.937 4 C -0.160 4.160 5 C 0.057 3.943 6 H 0.070 0.930 7 N -0.374 5.374 8 C -0.356 4.356 9 H 0.099 0.901 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.796 3.204 13 H -0.186 1.186 14 H -0.226 1.226 15 H -0.231 1.231 16 C -0.181 4.181 17 C -0.022 4.022 18 N -0.326 5.326 19 C 0.373 3.627 20 O -0.458 6.458 21 C -0.275 4.275 22 C 0.002 3.998 23 N -0.155 5.155 24 H 0.288 0.712 25 C -0.032 4.032 26 C -0.093 4.093 27 C -0.154 4.154 28 C 0.045 3.955 29 F -0.130 7.130 30 C -0.152 4.152 31 C -0.071 4.071 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.204 0.796 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.239 0.761 44 H 0.196 0.804 45 H 0.187 0.813 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.751 -19.734 -14.260 24.807 hybrid contribution 0.597 1.531 0.381 1.686 sum -4.154 -18.204 -13.879 23.265 Atomic orbital electron populations 1.21990 0.92786 1.02643 1.00220 1.21085 0.95035 0.94689 0.84658 0.93741 1.22129 0.96101 1.01306 0.96457 1.20465 0.91353 0.86137 0.96394 0.92972 1.42729 1.13016 1.06509 1.75140 1.19658 0.90707 0.94019 1.31232 0.90138 1.25467 1.01816 0.96156 1.03608 1.69836 1.37932 1.00671 1.53932 0.85173 0.80767 0.77707 0.76723 1.18646 1.22637 1.23051 1.22415 1.01557 0.98943 0.95223 1.22214 0.78606 1.01184 1.00164 1.47984 1.07821 1.56963 1.19852 1.17645 0.85017 0.78879 0.81188 1.90785 1.18338 1.59226 1.77414 1.20016 1.03996 1.09588 0.93937 1.22871 0.95102 0.92356 0.89441 1.41529 1.27999 1.38309 1.07645 0.71205 1.18405 0.92897 0.98708 0.93195 1.20309 0.97952 1.01028 0.90003 1.21103 0.95600 0.96814 1.01860 1.17639 0.89113 0.97857 0.90890 1.91458 1.57395 1.81367 1.82790 1.20431 0.98974 1.02167 0.93667 1.18644 0.96604 0.98986 0.92833 0.92833 0.93069 0.92107 0.89522 0.91426 0.79631 0.94492 0.90783 0.89370 0.86503 0.93889 0.76124 0.80388 0.81322 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 7.61 71.98 0.55 -3.47 16 2 C 0.15 5.17 3.20 44.98 0.14 5.31 16 3 H 0.04 1.85 6.64 -2.39 -0.02 1.84 16 4 C -0.12 -3.80 5.07 30.67 0.16 -3.64 16 5 C 0.16 5.70 3.10 45.02 0.14 5.84 16 6 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 7 N -0.73 -33.87 4.31 -322.82 -1.39 -35.26 16 8 C -0.22 -11.51 9.93 84.04 0.83 -10.68 16 9 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 10 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 11 N -0.97 -58.52 13.06 21.65 0.28 -58.24 16 12 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 15 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 16 C -0.14 -3.80 5.63 30.67 0.17 -3.63 16 17 C 0.10 2.87 5.55 86.36 0.48 3.35 16 18 N -0.59 -19.04 2.97 -799.43 -2.38 -21.42 16 19 C 0.58 19.41 7.43 86.51 0.64 20.05 16 20 O -0.58 -22.68 12.59 -4.26 -0.05 -22.74 16 21 C -0.26 -7.06 5.81 -19.01 -0.11 -7.17 16 22 C 0.14 2.22 9.57 83.70 0.80 3.03 16 23 N -0.55 -6.27 5.99 -187.04 -1.12 -7.39 16 24 H 0.45 1.06 8.96 -92.71 -0.83 0.23 16 25 C 0.07 1.30 7.26 38.89 0.28 1.58 16 26 C -0.07 -0.92 10.07 22.37 0.23 -0.69 16 27 C -0.13 -2.15 9.99 22.32 0.22 -1.93 16 28 C 0.06 1.58 7.29 22.37 0.16 1.74 16 29 F -0.15 -3.98 17.26 44.97 0.78 -3.20 16 30 C -0.13 -3.87 10.06 22.45 0.23 -3.64 16 31 C -0.07 -1.75 6.31 -20.08 -0.13 -1.88 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.94 6.68 -2.39 -0.02 1.92 16 34 H 0.06 2.06 6.81 -2.39 -0.02 2.05 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 37 H 0.37 19.18 6.06 -92.71 -0.56 18.62 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.12 2.46 3.24 -2.39 -0.01 2.45 16 42 H 0.04 1.61 7.74 -2.39 -0.02 1.60 16 43 H 0.22 2.30 5.97 -2.91 -0.02 2.28 16 44 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.11 3.78 8.02 -2.91 -0.02 3.76 16 Total: -1.00 -75.42 367.61 3.07 -72.35 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.34 Total: 28.88 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.27 Total: 0.30 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.61 Total: -122.31 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.42 3.07 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.362 kcal (2) G-P(sol) polarization free energy of solvation -75.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds