Wall clock time and date at job start Wed Apr 1 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69659 * 2 1 4 4 C 1.52769 * 109.51022 * 239.89137 * 2 1 3 5 5 C 1.53038 * 109.38221 * 185.70229 * 4 2 1 6 6 H 1.08992 * 109.45923 * 181.25972 * 5 4 2 7 7 N 1.46508 * 109.46041 * 301.21603 * 5 4 2 8 8 C 1.36928 * 120.00084 * 205.07115 * 7 5 4 9 9 H 1.08001 * 120.00061 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00178 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99708 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00013 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46871 * 90.00228 * 12 10 8 14 14 H 1.48504 * 109.46886 * 210.00075 * 12 10 8 15 15 H 1.48502 * 109.47146 * 330.00238 * 12 10 8 16 16 C 1.53034 * 109.54000 * 61.23666 * 5 4 2 17 17 C 1.53190 * 109.31420 * 298.63498 * 16 5 4 18 18 N 1.46921 * 109.59308 * 120.35883 * 2 1 3 19 19 C 1.34783 * 120.62691 * 353.42131 * 18 2 1 20 20 O 1.21673 * 119.99907 * 4.77310 * 19 18 2 21 21 C 1.46894 * 119.99699 * 184.76969 * 19 18 2 22 22 C 1.36393 * 126.76887 * 34.51037 * 21 19 18 23 23 N 1.35445 * 109.77506 * 180.16904 * 22 21 19 24 24 H 0.97000 * 124.79402 * 179.82609 * 23 22 21 25 25 C 1.38053 * 110.41584 * 359.55559 * 23 22 21 26 26 C 1.39112 * 133.15833 * 180.27004 * 25 23 22 27 27 C 1.37749 * 119.96604 * 180.02562 * 26 25 23 28 28 C 1.38948 * 120.61380 * 0.02562 * 27 26 25 29 29 F 1.35099 * 119.88042 * 180.02562 * 28 27 26 30 30 C 1.37953 * 120.24055 * 359.97433 * 28 27 26 31 31 C 1.39282 * 119.65464 * 0.02626 * 30 28 27 32 32 H 1.08997 * 109.46880 * 303.89637 * 1 2 3 33 33 H 1.08995 * 109.47860 * 63.90409 * 1 2 3 34 34 H 1.09000 * 109.46521 * 183.90214 * 1 2 3 35 35 H 1.09004 * 109.56427 * 65.66138 * 4 2 1 36 36 H 1.08997 * 109.38276 * 305.62652 * 4 2 1 37 37 H 0.97001 * 119.99569 * 25.07341 * 7 5 4 38 38 H 0.96998 * 120.00178 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.49795 * 178.68241 * 16 5 4 40 40 H 1.09006 * 109.49937 * 58.58665 * 16 5 4 41 41 H 1.08998 * 109.58893 * 294.84507 * 17 16 5 42 42 H 1.09004 * 109.70686 * 174.48850 * 17 16 5 43 43 H 1.08007 * 125.10898 * 359.97438 * 22 21 19 44 44 H 1.08004 * 120.01912 * 359.97438 * 26 25 23 45 45 H 1.08009 * 119.69727 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.16914 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2457 5 6 3.5639 -0.8459 -1.1728 6 1 3.9314 -1.3412 -2.0715 7 7 4.1578 0.4898 -1.0746 8 6 5.4416 0.7013 -1.5010 9 1 6.0163 -0.1164 -1.9103 10 6 6.0041 1.9670 -1.4084 11 7 5.3036 2.9636 -0.9102 12 14 7.7559 2.2553 -1.9896 13 1 7.7448 2.6367 -3.4247 14 1 8.3686 3.3477 -1.1917 15 1 8.5468 1.0107 -1.8143 16 6 3.9524 -1.6684 0.0578 17 6 3.4646 -0.9519 1.3208 18 7 2.0227 -0.6996 1.1943 19 6 1.1675 -1.1071 2.1531 20 8 -0.0316 -0.9749 1.9949 21 6 1.6832 -1.7110 3.3889 22 6 2.8391 -1.3860 4.0358 23 7 2.9808 -2.1604 5.1379 24 1 3.7273 -2.1131 5.7555 25 6 1.9097 -3.0226 5.2616 26 6 1.5754 -3.9968 6.1967 27 6 0.4100 -4.7170 6.0532 28 6 -0.4400 -4.4812 4.9797 29 9 -1.5796 -5.1959 4.8538 30 6 -0.1251 -3.5191 4.0425 31 6 1.0506 -2.7846 4.1771 32 1 -0.3633 0.5731 0.8530 33 1 -0.3635 0.4520 -0.9228 34 1 -0.3632 -1.0253 0.0699 35 1 1.7631 -0.1563 -2.1351 36 1 1.5965 -1.7167 -1.2944 37 1 3.6414 1.2243 -0.7073 38 1 5.6967 3.8479 -0.8451 39 1 5.0365 -1.7758 0.0962 40 1 3.4907 -2.6540 -0.0027 41 1 3.9929 -0.0049 1.4309 42 1 3.6508 -1.5777 2.1936 43 1 3.5380 -0.6274 3.7155 44 1 2.2297 -4.1890 7.0342 45 1 0.1549 -5.4727 6.7816 46 1 -0.7868 -3.3364 3.2087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044883029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:49 Heat of formation + Delta-G solvation = 13.007072 kcal Electronic energy + Delta-G solvation = -30648.094441 eV Core-core repulsion = 26453.662863 eV Total energy + Delta-G solvation = -4194.431578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.90207 -41.73450 -39.91636 -37.26639 -36.96043 -34.15726 -33.10755 -31.92857 -31.79519 -29.42943 -29.24901 -28.85237 -26.98722 -24.34399 -23.60740 -23.57942 -22.70318 -22.16956 -21.36352 -19.54804 -18.75141 -17.80423 -17.34582 -17.20757 -16.72340 -16.00467 -15.71968 -15.59322 -15.31636 -15.23043 -14.74316 -14.21491 -14.13008 -13.92751 -13.90824 -13.53243 -13.41065 -13.19162 -13.14686 -12.85869 -12.63177 -12.44603 -11.97222 -11.91148 -11.65104 -11.38707 -11.20134 -11.13291 -10.93860 -10.81033 -10.58458 -10.39296 -10.26190 -9.99457 -9.92347 -9.65477 -8.97777 -8.80140 -8.43803 -8.13779 -7.93007 -7.01686 -5.82579 -3.11281 0.67662 1.13608 1.93521 2.70967 3.16459 3.36109 3.38259 3.44098 3.45373 3.64803 4.08623 4.34718 4.53976 4.59263 4.66198 4.82694 5.05069 5.12782 5.20118 5.29464 5.37836 5.45168 5.51531 5.54002 5.58774 5.71635 5.74546 5.80249 5.92941 5.94804 5.99448 6.04479 6.12530 6.21021 6.31313 6.33481 6.36492 6.44757 6.52710 6.65518 6.76238 6.77870 6.80126 6.86559 7.08565 7.13383 7.65152 7.82826 8.36072 8.55741 9.47529 10.04672 10.39924 11.39816 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002843 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.888014 B = 9847.016329 C =10758.196092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.722 5.722 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.283 1.283 16 C -0.148 4.148 17 C 0.104 3.896 18 N -0.593 5.593 19 C 0.585 3.415 20 O -0.542 6.542 21 C -0.218 4.218 22 C 0.111 3.889 23 N -0.578 5.578 24 H 0.422 0.578 25 C 0.076 3.924 26 C -0.095 4.095 27 C -0.135 4.135 28 C 0.074 3.926 29 F -0.142 7.142 30 C -0.098 4.098 31 C -0.039 4.039 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.189 0.811 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 -13.319 14.234 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.097 0.903 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.068 0.932 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.581 5.581 12 Si 0.735 3.265 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.189 4.189 17 C -0.018 4.018 18 N -0.325 5.325 19 C 0.374 3.626 20 O -0.421 6.421 21 C -0.228 4.228 22 C -0.021 4.021 23 N -0.180 5.180 24 H 0.260 0.740 25 C -0.030 4.030 26 C -0.116 4.116 27 C -0.155 4.155 28 C 0.054 3.946 29 F -0.120 7.120 30 C -0.117 4.117 31 C -0.044 4.044 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.206 0.794 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.540 -13.245 14.124 20.438 hybrid contribution 1.297 0.425 0.046 1.366 sum -5.243 -12.820 14.170 19.815 Atomic orbital electron populations 1.22208 0.93140 1.03298 1.00370 1.21159 0.94907 0.95809 0.83580 0.90262 1.22174 0.97296 1.00384 0.97433 1.20193 0.90495 0.88044 0.94953 0.93201 1.42515 1.13812 1.04912 1.75206 1.19232 0.89830 0.94223 1.33611 0.91243 1.24714 0.98235 0.95919 1.01978 1.69649 1.36541 1.00669 1.51215 0.86239 0.84691 0.77326 0.78195 1.21789 1.21890 1.20847 1.22486 1.01222 0.98060 0.97148 1.22027 0.79555 1.01468 0.98777 1.48008 1.07660 1.56849 1.20013 1.17221 0.85782 0.77611 0.81945 1.90823 1.15235 1.56570 1.79482 1.20140 0.97847 1.04478 1.00336 1.22473 0.97233 0.95580 0.86781 1.41556 1.20745 1.31615 1.24066 0.74038 1.18241 0.89927 0.96421 0.98392 1.19809 0.97628 0.95586 0.98549 1.20734 0.94535 1.01903 0.98324 1.17335 0.84854 0.94909 0.97519 1.91486 1.47954 1.76676 1.95927 1.20496 0.96854 0.94770 0.99591 1.18426 0.94417 0.97054 0.94471 0.91330 0.94207 0.91397 0.90756 0.92087 0.78131 0.93518 0.90944 0.93261 0.89828 0.90620 0.79442 0.85027 0.84394 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.58 37.16 0.28 -1.87 16 2 C 0.15 2.48 3.18 -67.82 -0.22 2.26 16 3 H 0.08 1.48 6.64 -51.93 -0.34 1.14 16 4 C -0.13 -2.21 5.05 -26.83 -0.14 -2.35 16 5 C 0.17 3.21 3.10 -67.89 -0.21 2.99 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.48 4.31 -53.39 -0.23 -16.71 16 8 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 12 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.15 -2.39 5.78 -26.62 -0.15 -2.54 16 17 C 0.10 1.55 5.05 -3.71 -0.02 1.54 16 18 N -0.59 -9.38 2.98 -166.92 -0.50 -9.88 16 19 C 0.59 9.48 7.53 -12.75 -0.10 9.38 16 20 O -0.54 -9.96 12.48 5.21 0.07 -9.89 16 21 C -0.22 -2.97 5.58 -103.31 -0.58 -3.55 16 22 C 0.11 1.15 9.41 -16.62 -0.16 0.99 16 23 N -0.58 -4.74 5.99 -10.47 -0.06 -4.80 16 24 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 25 C 0.08 0.78 7.26 -83.93 -0.61 0.17 16 26 C -0.10 -0.80 10.06 -39.44 -0.40 -1.20 16 27 C -0.14 -1.24 9.99 -39.50 -0.39 -1.64 16 28 C 0.07 0.87 7.29 -39.42 -0.29 0.58 16 29 F -0.14 -1.75 17.26 2.25 0.04 -1.71 16 30 C -0.10 -1.30 10.07 -39.30 -0.40 -1.69 16 31 C -0.04 -0.51 6.34 -104.95 -0.67 -1.18 16 32 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.15 6.74 -51.93 -0.35 0.80 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.38 9.37 6.07 -40.82 -0.25 9.12 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 42 H 0.08 0.94 4.40 -51.93 -0.23 0.71 16 43 H 0.19 1.62 6.71 -52.48 -0.35 1.27 16 44 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -31.31 368.75 -9.69 -41.00 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.99 Total: 10.81 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -4.27 Total: -4.79 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.07 Total: -57.33 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.31 -9.69 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.006 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds