Wall clock time and date at job start Wed Apr 1 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69659 * 2 1 4 4 C 1.52769 * 109.51022 * 239.89137 * 2 1 3 5 5 C 1.53038 * 109.38221 * 185.70229 * 4 2 1 6 6 H 1.08992 * 109.45923 * 181.25972 * 5 4 2 7 7 N 1.46508 * 109.46041 * 301.21603 * 5 4 2 8 8 C 1.36928 * 120.00084 * 205.07115 * 7 5 4 9 9 H 1.08001 * 120.00061 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00178 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99708 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00013 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46871 * 90.00228 * 12 10 8 14 14 H 1.48504 * 109.46886 * 210.00075 * 12 10 8 15 15 H 1.48502 * 109.47146 * 330.00238 * 12 10 8 16 16 C 1.53034 * 109.54000 * 61.23666 * 5 4 2 17 17 C 1.53190 * 109.31420 * 298.63498 * 16 5 4 18 18 N 1.46921 * 109.59308 * 120.35883 * 2 1 3 19 19 C 1.34783 * 120.62691 * 353.42131 * 18 2 1 20 20 O 1.21673 * 119.99907 * 4.77310 * 19 18 2 21 21 C 1.46894 * 119.99699 * 184.76969 * 19 18 2 22 22 C 1.36393 * 126.76887 * 34.51037 * 21 19 18 23 23 N 1.35445 * 109.77506 * 180.16904 * 22 21 19 24 24 H 0.97000 * 124.79402 * 179.82609 * 23 22 21 25 25 C 1.38053 * 110.41584 * 359.55559 * 23 22 21 26 26 C 1.39112 * 133.15833 * 180.27004 * 25 23 22 27 27 C 1.37749 * 119.96604 * 180.02562 * 26 25 23 28 28 C 1.38948 * 120.61380 * 0.02562 * 27 26 25 29 29 F 1.35099 * 119.88042 * 180.02562 * 28 27 26 30 30 C 1.37953 * 120.24055 * 359.97433 * 28 27 26 31 31 C 1.39282 * 119.65464 * 0.02626 * 30 28 27 32 32 H 1.08997 * 109.46880 * 303.89637 * 1 2 3 33 33 H 1.08995 * 109.47860 * 63.90409 * 1 2 3 34 34 H 1.09000 * 109.46521 * 183.90214 * 1 2 3 35 35 H 1.09004 * 109.56427 * 65.66138 * 4 2 1 36 36 H 1.08997 * 109.38276 * 305.62652 * 4 2 1 37 37 H 0.97001 * 119.99569 * 25.07341 * 7 5 4 38 38 H 0.96998 * 120.00178 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.49795 * 178.68241 * 16 5 4 40 40 H 1.09006 * 109.49937 * 58.58665 * 16 5 4 41 41 H 1.08998 * 109.58893 * 294.84507 * 17 16 5 42 42 H 1.09004 * 109.70686 * 174.48850 * 17 16 5 43 43 H 1.08007 * 125.10898 * 359.97438 * 22 21 19 44 44 H 1.08004 * 120.01912 * 359.97438 * 26 25 23 45 45 H 1.08009 * 119.69727 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.16914 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2457 5 6 3.5639 -0.8459 -1.1728 6 1 3.9314 -1.3412 -2.0715 7 7 4.1578 0.4898 -1.0746 8 6 5.4416 0.7013 -1.5010 9 1 6.0163 -0.1164 -1.9103 10 6 6.0041 1.9670 -1.4084 11 7 5.3036 2.9636 -0.9102 12 14 7.7559 2.2553 -1.9896 13 1 7.7448 2.6367 -3.4247 14 1 8.3686 3.3477 -1.1917 15 1 8.5468 1.0107 -1.8143 16 6 3.9524 -1.6684 0.0578 17 6 3.4646 -0.9519 1.3208 18 7 2.0227 -0.6996 1.1943 19 6 1.1675 -1.1071 2.1531 20 8 -0.0316 -0.9749 1.9949 21 6 1.6832 -1.7110 3.3889 22 6 2.8391 -1.3860 4.0358 23 7 2.9808 -2.1604 5.1379 24 1 3.7273 -2.1131 5.7555 25 6 1.9097 -3.0226 5.2616 26 6 1.5754 -3.9968 6.1967 27 6 0.4100 -4.7170 6.0532 28 6 -0.4400 -4.4812 4.9797 29 9 -1.5796 -5.1959 4.8538 30 6 -0.1251 -3.5191 4.0425 31 6 1.0506 -2.7846 4.1771 32 1 -0.3633 0.5731 0.8530 33 1 -0.3635 0.4520 -0.9228 34 1 -0.3632 -1.0253 0.0699 35 1 1.7631 -0.1563 -2.1351 36 1 1.5965 -1.7167 -1.2944 37 1 3.6414 1.2243 -0.7073 38 1 5.6967 3.8479 -0.8451 39 1 5.0365 -1.7758 0.0962 40 1 3.4907 -2.6540 -0.0027 41 1 3.9929 -0.0049 1.4309 42 1 3.6508 -1.5777 2.1936 43 1 3.5380 -0.6274 3.7155 44 1 2.2297 -4.1890 7.0342 45 1 0.1549 -5.4727 6.7816 46 1 -0.7868 -3.3364 3.2087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044883029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:48 Heat of formation + Delta-G solvation = -5.237349 kcal Electronic energy + Delta-G solvation = -30648.885578 eV Core-core repulsion = 26453.662863 eV Total energy + Delta-G solvation = -4195.222715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.82860 -42.61187 -41.16369 -38.67691 -37.76531 -35.80133 -34.32440 -33.62179 -32.77794 -30.88348 -30.16990 -29.93937 -28.37385 -25.79012 -25.37770 -24.48710 -23.77780 -23.06518 -22.56963 -20.81841 -19.82673 -19.20927 -18.77962 -18.26872 -17.66602 -17.01780 -16.88260 -16.75575 -16.58813 -16.23292 -16.13161 -15.63406 -15.54264 -15.16805 -14.91159 -14.89219 -14.56416 -14.50055 -14.15274 -13.93821 -13.74089 -13.67835 -13.37898 -13.30170 -12.94163 -12.82831 -12.67196 -12.48040 -12.35965 -12.09313 -12.01683 -11.93071 -11.84663 -11.58555 -11.35022 -10.90223 -10.82013 -10.09146 -9.46301 -9.26857 -8.93846 -8.81368 -7.87228 -5.14373 -0.15560 0.31031 0.98373 1.51138 1.52850 1.60047 1.91641 2.04521 2.30050 2.61217 2.69627 3.23975 3.46278 3.59453 3.63388 3.84471 3.89641 3.97436 4.04984 4.07382 4.10454 4.26989 4.33290 4.35461 4.43921 4.50344 4.54881 4.64635 4.69653 4.77783 4.88919 4.95043 4.96943 5.08735 5.13255 5.16306 5.19401 5.28003 5.30377 5.37689 5.42640 5.43848 5.48412 5.60931 5.78983 5.95521 6.34429 6.49930 6.58987 7.31708 7.41884 8.17011 8.41750 9.35898 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002843 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.888014 B = 9847.016329 C =10758.196092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.150 3.850 3 H 0.056 0.944 4 C -0.124 4.124 5 C 0.168 3.832 6 H 0.046 0.954 7 N -0.729 5.729 8 C -0.228 4.228 9 H 0.075 0.925 10 C -0.072 4.072 11 N -0.968 5.968 12 Si 0.964 3.036 13 H -0.295 1.295 14 H -0.300 1.300 15 H -0.268 1.268 16 C -0.140 4.140 17 C 0.112 3.888 18 N -0.594 5.594 19 C 0.582 3.418 20 O -0.574 6.574 21 C -0.261 4.261 22 C 0.137 3.863 23 N -0.554 5.554 24 H 0.444 0.556 25 C 0.074 3.926 26 C -0.074 4.074 27 C -0.133 4.133 28 C 0.066 3.934 29 F -0.150 7.150 30 C -0.129 4.129 31 C -0.063 4.063 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.374 0.626 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.207 0.793 44 H 0.177 0.823 45 H 0.169 0.831 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -15.394 16.494 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.046 3.954 3 H 0.074 0.926 4 C -0.163 4.163 5 C 0.059 3.941 6 H 0.064 0.936 7 N -0.370 5.370 8 C -0.360 4.360 9 H 0.093 0.907 10 C -0.265 4.265 11 N -0.619 5.619 12 Si 0.795 3.205 13 H -0.223 1.223 14 H -0.227 1.227 15 H -0.193 1.193 16 C -0.181 4.181 17 C -0.010 4.010 18 N -0.325 5.325 19 C 0.373 3.627 20 O -0.456 6.456 21 C -0.271 4.271 22 C 0.002 3.998 23 N -0.156 5.156 24 H 0.286 0.714 25 C -0.032 4.032 26 C -0.094 4.094 27 C -0.153 4.153 28 C 0.046 3.954 29 F -0.129 7.129 30 C -0.149 4.149 31 C -0.068 4.068 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.207 0.793 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.224 0.776 44 H 0.194 0.806 45 H 0.186 0.814 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.640 -15.390 16.410 22.971 hybrid contribution 0.654 0.982 -0.614 1.330 sum -3.986 -14.408 15.796 21.748 Atomic orbital electron populations 1.22025 0.92740 1.02543 1.00247 1.21017 0.95087 0.94827 0.84423 0.92625 1.22060 0.96031 1.01059 0.97105 1.20394 0.91371 0.86343 0.95974 0.93601 1.42639 1.13064 1.06344 1.74967 1.19573 0.90741 0.94091 1.31638 0.90663 1.25398 1.01658 0.96037 1.03359 1.69802 1.37975 1.00730 1.53426 0.85272 0.80993 0.77265 0.76999 1.22313 1.22687 1.19326 1.22353 1.01170 0.98417 0.96156 1.21986 0.78681 1.00812 0.99521 1.48004 1.08029 1.56780 1.19721 1.17633 0.85393 0.77014 0.82624 1.90797 1.16622 1.57831 1.80302 1.19979 1.00062 1.06558 1.00532 1.22615 0.95876 0.94854 0.86412 1.41495 1.20678 1.30028 1.23432 0.71390 1.18419 0.89818 0.97044 0.97911 1.20288 0.97265 0.93347 0.98502 1.21095 0.94081 1.02452 0.97674 1.17609 0.85064 0.94544 0.98180 1.91458 1.48617 1.76790 1.96056 1.20406 0.97573 0.96808 1.00131 1.18596 0.95048 0.97381 0.95793 0.92871 0.93024 0.92194 0.91150 0.90582 0.79276 0.94315 0.91195 0.91484 0.91929 0.87546 0.77622 0.80601 0.81353 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.58 71.98 0.55 -3.43 16 2 C 0.15 5.15 3.18 44.83 0.14 5.30 16 3 H 0.06 2.19 6.64 -2.39 -0.02 2.17 16 4 C -0.12 -4.09 5.05 30.53 0.15 -3.93 16 5 C 0.17 6.12 3.10 45.01 0.14 6.26 16 6 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 7 N -0.73 -33.47 4.31 -322.82 -1.39 -34.86 16 8 C -0.23 -11.70 9.93 84.04 0.83 -10.86 16 9 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 10 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 11 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 12 Si 0.96 44.02 29.55 68.60 2.03 46.05 16 13 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 C -0.14 -4.32 5.78 30.67 0.18 -4.15 16 17 C 0.11 3.24 5.05 86.36 0.44 3.67 16 18 N -0.59 -18.92 2.98 -800.24 -2.38 -21.30 16 19 C 0.58 19.26 7.53 86.51 0.65 19.92 16 20 O -0.57 -22.22 12.48 -4.26 -0.05 -22.27 16 21 C -0.26 -6.97 5.58 -19.01 -0.11 -7.08 16 22 C 0.14 2.48 9.41 83.70 0.79 3.27 16 23 N -0.55 -6.94 5.99 -187.03 -1.12 -8.06 16 24 H 0.44 1.82 8.96 -92.71 -0.83 0.99 16 25 C 0.07 1.30 7.26 38.89 0.28 1.58 16 26 C -0.07 -0.91 10.06 22.36 0.23 -0.69 16 27 C -0.13 -2.03 9.99 22.32 0.22 -1.81 16 28 C 0.07 1.52 7.29 22.37 0.16 1.68 16 29 F -0.15 -3.73 17.26 44.97 0.78 -2.95 16 30 C -0.13 -3.56 10.07 22.45 0.23 -3.34 16 31 C -0.06 -1.63 6.34 -20.08 -0.13 -1.76 16 32 H 0.05 1.94 6.75 -2.39 -0.02 1.92 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 2.10 6.74 -2.39 -0.02 2.09 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.37 18.72 6.07 -92.71 -0.56 18.16 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.06 2.11 7.74 -2.39 -0.02 2.09 16 42 H 0.11 2.39 4.40 -2.38 -0.01 2.38 16 43 H 0.21 2.96 6.71 -2.91 -0.02 2.95 16 44 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 45 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -70.76 368.75 3.01 -67.75 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.35 Total: 30.60 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.22 Total: 1.18 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.61 Total: -120.36 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.76 3.01 -67.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.510 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds