Wall clock time and date at job start Wed Apr 1 2020 04:57:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.58472 * 2 1
4 4 C 1.53192 * 109.58623 * 120.42501 * 2 1 3
5 5 C 1.53039 * 109.30799 * 174.41877 * 4 2 1
6 6 C 1.53036 * 109.54297 * 298.63608 * 5 4 2
7 7 H 1.08989 * 109.49729 * 301.38258 * 6 5 4
8 8 N 1.46498 * 109.49726 * 181.31612 * 6 5 4
9 9 C 1.34777 * 119.99892 * 155.00156 * 8 6 5
10 10 O 1.21579 * 120.00222 * 0.02562 * 9 8 6
11 11 C 1.47679 * 120.00235 * 180.02562 * 9 8 6
12 12 C 1.39916 * 120.38700 * 359.72116 * 11 9 8
13 13 N 1.31454 * 121.14040 * 179.76396 * 12 11 9
14 14 C 1.32481 * 121.80584 * 0.50812 * 13 12 11
15 15 N 1.37874 * 133.44809 * 179.74090 * 14 13 12
16 16 H 0.96995 * 126.25062 * 0.02562 * 15 14 13
17 17 C 1.36517 * 107.49470 * 180.02562 * 15 14 13
18 18 O 1.35263 * 125.01884 * 179.97438 * 17 15 14
19 19 N 1.30718 * 109.95725 * 359.97438 * 17 15 14
20 20 C 1.35895 * 109.39750 * 0.02562 * 19 17 15
21 21 C 1.39415 * 133.63259 * 180.02562 * 20 19 17
22 22 C 1.53195 * 109.31110 * 61.37023 * 6 5 4
23 23 N 1.46919 * 109.58699 * 239.71726 * 2 1 3
24 24 C 1.36946 * 120.63051 * 6.62558 * 23 2 1
25 25 H 1.07998 * 119.99644 * 330.13783 * 24 23 2
26 26 C 1.38810 * 120.00134 * 150.13763 * 24 23 2
27 27 N 1.31622 * 119.99791 * 344.50946 * 26 24 23
28 28 Si 1.86800 * 120.00151 * 164.50805 * 26 24 23
29 29 H 1.48499 * 109.47015 * 60.00031 * 28 26 24
30 30 H 1.48501 * 109.47145 * 180.02562 * 28 26 24
31 31 H 1.48504 * 109.47060 * 299.99871 * 28 26 24
32 32 H 1.08998 * 109.46966 * 180.28125 * 1 2 3
33 33 H 1.09003 * 109.46992 * 300.28301 * 1 2 3
34 34 H 1.08993 * 109.47255 * 60.28142 * 1 2 3
35 35 H 1.09004 * 109.49669 * 54.47691 * 4 2 1
36 36 H 1.09000 * 109.50190 * 294.37549 * 4 2 1
37 37 H 1.09010 * 109.45774 * 178.61676 * 5 4 2
38 38 H 1.09003 * 109.45873 * 58.66492 * 5 4 2
39 39 H 0.97002 * 120.00602 * 335.00287 * 8 6 5
40 40 H 1.07997 * 119.43512 * 0.02562 * 12 11 9
41 41 H 0.96705 * 114.00033 * 90.00239 * 18 17 15
42 42 H 1.08003 * 120.96319 * 0.02562 * 21 20 19
43 43 H 1.08990 * 109.58848 * 65.15012 * 22 6 5
44 44 H 1.08998 * 109.58555 * 185.57785 * 22 6 5
45 45 H 0.96999 * 119.99934 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0436 -0.7309 1.2445
5 6 3.5675 -0.8494 1.1690
6 6 3.9569 -1.6656 -0.0656
7 1 3.4988 -2.6529 -0.0083
8 7 5.4142 -1.8051 -0.1198
9 6 5.9677 -2.8471 -0.7713
10 8 5.2575 -3.6711 -1.3144
11 6 7.4367 -2.9881 -0.8255
12 6 8.2618 -2.0415 -0.2084
13 7 9.5710 -2.1550 -0.2435
14 6 10.1683 -3.1585 -0.8690
15 7 11.4891 -3.5057 -1.0589
16 1 12.2624 -3.0208 -0.7309
17 6 11.5094 -4.6566 -1.7928
18 8 12.6284 -5.3089 -2.1827
19 7 10.2878 -5.0352 -2.0629
20 6 9.4107 -4.1506 -1.5198
21 6 8.0193 -4.0658 -1.4980
22 6 3.4651 -0.9452 -1.3250
23 7 2.0226 -0.6980 -1.1953
24 6 1.1537 -1.1099 -2.1704
25 1 0.1398 -1.3776 -1.9121
26 6 1.5762 -1.1835 -3.4906
27 7 2.6870 -0.5822 -3.8605
28 14 0.5683 -2.1360 -4.7421
29 1 -0.7921 -1.5477 -4.8331
30 1 1.2298 -2.0625 -6.0696
31 1 0.4664 -3.5557 -4.3184
32 1 -0.3633 -1.0276 0.0050
33 1 -0.3633 0.5182 0.8875
34 1 -0.3633 0.5094 -0.8924
35 1 1.6031 -1.7270 1.2892
36 1 1.7661 -0.1695 2.1367
37 1 3.9379 -1.3474 2.0651
38 1 4.0062 0.1460 1.0995
39 1 5.9809 -1.1476 0.3131
40 1 7.8154 -1.2055 0.3093
41 1 12.9363 -5.9737 -1.5515
42 1 7.4094 -4.8113 -1.9866
43 1 3.9903 0.0038 -1.4317
44 1 3.6518 -1.5689 -2.1992
45 1 2.9821 -0.6333 -4.7831
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071628512.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:04
Heat of formation + Delta-G solvation = 41.589667 kcal
Electronic energy + Delta-G solvation = -29916.779206 eV
Core-core repulsion = 25743.507024 eV
Total energy + Delta-G solvation = -4173.272182 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.57 seconds
Orbital eigenvalues (eV)
-42.73786 -39.97778 -38.78726 -37.66571 -37.08202 -34.51540 -34.01220 -32.80319
-31.76846 -30.85174 -29.88495 -29.33026 -26.12415 -25.10485 -24.08442 -23.96545
-22.28864 -22.19266 -20.98964 -20.25466 -19.66157 -19.32939 -18.50795 -18.03714
-17.01436 -16.50836 -16.29606 -16.00351 -15.36536 -15.07880 -14.87300 -14.27478
-14.11187 -13.81377 -13.77531 -13.59510 -13.34676 -13.27302 -12.82419 -12.74203
-12.52725 -12.36030 -11.84515 -11.56363 -11.41337 -11.32407 -11.09742 -10.86941
-10.66034 -10.52261 -10.38780 -10.24945 -10.02368 -9.91513 -9.64347 -9.44426
-9.34102 -9.19545 -8.83751 -8.55268 -8.37944 -6.57287 -5.70697 -3.15484
0.36997 0.57454 1.68120 2.16422 2.95995 3.05768 3.42189 3.47245
3.52495 3.54342 3.76983 3.89336 4.31711 4.51048 4.57243 4.60210
4.72641 5.05850 5.32723 5.36681 5.39121 5.50913 5.58875 5.67464
5.75506 5.80501 5.98107 6.07567 6.11727 6.13238 6.28645 6.32405
6.41172 6.47103 6.50533 6.64490 6.74657 6.90320 6.98238 7.07144
7.15124 7.17305 7.33466 7.43918 7.75878 7.83332 7.90909 8.51515
8.55856 9.28139 9.92327 10.47677 11.37455
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.014858 B = 0.002670 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.060089 B =10483.380972 C =11868.290926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.165 3.835
3 H 0.025 0.975
4 C -0.126 4.126
5 C -0.117 4.117
6 C 0.117 3.883
7 H 0.085 0.915
8 N -0.713 5.713
9 C 0.563 3.437
10 O -0.522 6.522
11 C -0.184 4.184
12 C 0.177 3.823
13 N -0.483 5.483
14 C 0.265 3.735
15 N -0.587 5.587
16 H 0.429 0.571
17 C 0.463 3.537
18 O -0.436 6.436
19 N -0.466 5.466
20 C 0.005 3.995
21 C 0.047 3.953
22 C 0.168 3.832
23 N -0.583 5.583
24 C -0.254 4.254
25 H 0.069 0.931
26 C 0.008 3.992
27 N -0.900 5.900
28 Si 0.900 3.100
29 H -0.284 1.284
30 H -0.291 1.291
31 H -0.282 1.282
32 H 0.053 0.947
33 H 0.037 0.963
34 H 0.061 0.939
35 H 0.061 0.939
36 H 0.055 0.945
37 H 0.052 0.948
38 H 0.059 0.941
39 H 0.391 0.609
40 H 0.173 0.827
41 H 0.413 0.587
42 H 0.160 0.840
43 H 0.018 0.982
44 H 0.094 0.906
45 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.678 -3.657 12.096 21.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.058 3.942
3 H 0.043 0.957
4 C -0.166 4.166
5 C -0.155 4.155
6 C 0.012 3.988
7 H 0.103 0.897
8 N -0.364 5.364
9 C 0.347 3.653
10 O -0.398 6.398
11 C -0.192 4.192
12 C 0.008 3.992
13 N -0.196 5.196
14 C 0.029 3.971
15 N -0.215 5.215
16 H 0.269 0.731
17 C 0.157 3.843
18 O -0.238 6.238
19 N -0.197 5.197
20 C -0.114 4.114
21 C 0.019 3.981
22 C 0.041 3.959
23 N -0.306 5.306
24 C -0.384 4.384
25 H 0.087 0.913
26 C -0.192 4.192
27 N -0.543 5.543
28 Si 0.730 3.270
29 H -0.210 1.210
30 H -0.217 1.217
31 H -0.209 1.209
32 H 0.072 0.928
33 H 0.056 0.944
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.073 0.927
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.225 0.775
40 H 0.190 0.810
41 H 0.272 0.728
42 H 0.178 0.822
43 H 0.036 0.964
44 H 0.112 0.888
45 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 17.562 -4.127 10.886 21.070
hybrid contribution 0.427 -0.084 0.018 0.435
sum 17.989 -4.211 10.904 21.453
Atomic orbital electron populations
1.21802 0.96028 1.01371 1.00199 1.20492 0.93072 0.93559 0.87066
0.95742 1.22045 0.94259 1.01355 0.98921 1.21688 0.97482 0.99672
0.96646 1.22058 0.77173 1.01152 0.98432 0.89723 1.45976 1.08895
1.26273 1.55209 1.17697 0.86114 0.82128 0.79332 1.90852 1.62437
1.42069 1.44408 1.20846 0.95477 0.98258 1.04653 1.22779 0.86267
0.96490 0.93625 1.66374 1.12150 1.21475 1.19627 1.18698 0.84773
0.94625 0.98980 1.42990 1.06897 1.24672 1.46938 0.73102 1.20156
0.87199 0.84773 0.92182 1.84869 1.37528 1.54568 1.46818 1.70741
0.97031 1.27464 1.24458 1.19327 0.94358 0.95017 1.02738 1.20905
0.90384 0.95547 0.91220 1.21078 0.83640 0.96902 0.94278 1.44007
1.02599 1.64820 1.19190 1.19072 0.95061 1.38304 0.85933 0.91319
1.25083 0.97792 0.99219 0.97066 1.69987 1.24046 1.43497 1.16808
0.86410 0.79408 0.80467 0.80711 1.20988 1.21695 1.20878 0.92815
0.94391 0.91987 0.92034 0.92666 0.92973 0.92185 0.77484 0.81016
0.72771 0.82223 0.96386 0.88831 0.93669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 36.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.52 7.95 37.16 0.30 -2.23 16
2 C 0.16 3.29 3.50 -67.60 -0.24 3.06 16
3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
4 C -0.13 -2.06 5.37 -26.61 -0.14 -2.21 16
5 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16
6 C 0.12 2.16 2.61 -67.81 -0.18 1.98 16
7 H 0.08 1.79 7.58 -51.94 -0.39 1.40 16
8 N -0.71 -10.82 5.03 -54.69 -0.28 -11.09 16
9 C 0.56 9.48 7.74 -12.40 -0.10 9.39 16
10 O -0.52 -11.21 16.06 5.30 0.09 -11.13 16
11 C -0.18 -2.52 5.89 -104.85 -0.62 -3.14 16
12 C 0.18 1.99 10.69 -17.09 -0.18 1.80 16
13 N -0.48 -5.71 10.36 -11.91 -0.12 -5.83 16
14 C 0.27 3.15 8.45 -155.41 -1.31 1.83 16
15 N -0.59 -5.00 6.23 -13.35 -0.08 -5.09 16
16 H 0.43 2.20 8.96 -40.82 -0.37 1.84 16
17 C 0.46 4.35 9.39 -88.83 -0.83 3.51 16
18 O -0.44 -2.61 13.63 -17.48 -0.24 -2.85 16
19 N -0.47 -6.02 11.32 -12.21 -0.14 -6.16 16
20 C 0.01 0.07 7.22 -84.67 -0.61 -0.54 16
21 C 0.05 0.67 9.75 -38.58 -0.38 0.29 16
22 C 0.17 3.96 4.86 -3.71 -0.02 3.94 16
23 N -0.58 -14.25 2.99 -164.78 -0.49 -14.75 16
24 C -0.25 -6.90 8.57 -15.06 -0.13 -7.03 16
25 H 0.07 1.82 6.24 -52.49 -0.33 1.49 16
26 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16
27 N -0.90 -26.55 11.23 55.49 0.62 -25.93 16
28 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16
29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
30 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
31 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16
32 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16
33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16
35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16
38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
39 H 0.39 4.39 6.64 -40.82 -0.27 4.12 16
40 H 0.17 1.36 6.39 -52.49 -0.34 1.03 16
41 H 0.41 0.08 9.06 45.56 0.41 0.49 16
42 H 0.16 2.31 7.72 -52.48 -0.41 1.90 16
43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
44 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16
45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 369.14 15.07 5.56 5.56
Total: -1.00 -36.44 369.14 -9.66 -46.09
By element:
Atomic # 1 Polarization: 9.77 SS G_CDS: -4.88 Total: 4.89 kcal
Atomic # 6 Polarization: 13.55 SS G_CDS: -4.67 Total: 8.88 kcal
Atomic # 7 Polarization: -68.36 SS G_CDS: -0.49 Total: -68.85 kcal
Atomic # 8 Polarization: -13.82 SS G_CDS: -0.15 Total: -13.98 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -36.44 -9.66 -46.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071628512.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.681 kcal
(2) G-P(sol) polarization free energy of solvation -36.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.57 seconds