Wall clock time and date at job start Wed Apr 1 2020 04:57:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.58472 * 2 1
4 4 C 1.53192 * 109.58623 * 120.42501 * 2 1 3
5 5 C 1.53039 * 109.30799 * 174.41877 * 4 2 1
6 6 C 1.53036 * 109.54297 * 298.63608 * 5 4 2
7 7 H 1.08989 * 109.49729 * 301.38258 * 6 5 4
8 8 N 1.46498 * 109.49726 * 181.31612 * 6 5 4
9 9 C 1.34777 * 119.99892 * 155.00156 * 8 6 5
10 10 O 1.21579 * 120.00222 * 0.02562 * 9 8 6
11 11 C 1.47679 * 120.00235 * 180.02562 * 9 8 6
12 12 C 1.39916 * 120.38700 * 359.72116 * 11 9 8
13 13 N 1.31454 * 121.14040 * 179.76396 * 12 11 9
14 14 C 1.32481 * 121.80584 * 0.50812 * 13 12 11
15 15 N 1.37874 * 133.44809 * 179.74090 * 14 13 12
16 16 H 0.96995 * 126.25062 * 0.02562 * 15 14 13
17 17 C 1.36517 * 107.49470 * 180.02562 * 15 14 13
18 18 O 1.35263 * 125.01884 * 179.97438 * 17 15 14
19 19 N 1.30718 * 109.95725 * 359.97438 * 17 15 14
20 20 C 1.35895 * 109.39750 * 0.02562 * 19 17 15
21 21 C 1.39415 * 133.63259 * 180.02562 * 20 19 17
22 22 C 1.53195 * 109.31110 * 61.37023 * 6 5 4
23 23 N 1.46919 * 109.58699 * 239.71726 * 2 1 3
24 24 C 1.36946 * 120.63051 * 6.62558 * 23 2 1
25 25 H 1.07998 * 119.99644 * 330.13783 * 24 23 2
26 26 C 1.38810 * 120.00134 * 150.13763 * 24 23 2
27 27 N 1.31622 * 119.99791 * 344.50946 * 26 24 23
28 28 Si 1.86800 * 120.00151 * 164.50805 * 26 24 23
29 29 H 1.48499 * 109.47015 * 60.00031 * 28 26 24
30 30 H 1.48501 * 109.47145 * 180.02562 * 28 26 24
31 31 H 1.48504 * 109.47060 * 299.99871 * 28 26 24
32 32 H 1.08998 * 109.46966 * 180.28125 * 1 2 3
33 33 H 1.09003 * 109.46992 * 300.28301 * 1 2 3
34 34 H 1.08993 * 109.47255 * 60.28142 * 1 2 3
35 35 H 1.09004 * 109.49669 * 54.47691 * 4 2 1
36 36 H 1.09000 * 109.50190 * 294.37549 * 4 2 1
37 37 H 1.09010 * 109.45774 * 178.61676 * 5 4 2
38 38 H 1.09003 * 109.45873 * 58.66492 * 5 4 2
39 39 H 0.97002 * 120.00602 * 335.00287 * 8 6 5
40 40 H 1.07997 * 119.43512 * 0.02562 * 12 11 9
41 41 H 0.96705 * 114.00033 * 90.00239 * 18 17 15
42 42 H 1.08003 * 120.96319 * 0.02562 * 21 20 19
43 43 H 1.08990 * 109.58848 * 65.15012 * 22 6 5
44 44 H 1.08998 * 109.58555 * 185.57785 * 22 6 5
45 45 H 0.96999 * 119.99934 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0436 -0.7309 1.2445
5 6 3.5675 -0.8494 1.1690
6 6 3.9569 -1.6656 -0.0656
7 1 3.4988 -2.6529 -0.0083
8 7 5.4142 -1.8051 -0.1198
9 6 5.9677 -2.8471 -0.7713
10 8 5.2575 -3.6711 -1.3144
11 6 7.4367 -2.9881 -0.8255
12 6 8.2618 -2.0415 -0.2084
13 7 9.5710 -2.1550 -0.2435
14 6 10.1683 -3.1585 -0.8690
15 7 11.4891 -3.5057 -1.0589
16 1 12.2624 -3.0208 -0.7309
17 6 11.5094 -4.6566 -1.7928
18 8 12.6284 -5.3089 -2.1827
19 7 10.2878 -5.0352 -2.0629
20 6 9.4107 -4.1506 -1.5198
21 6 8.0193 -4.0658 -1.4980
22 6 3.4651 -0.9452 -1.3250
23 7 2.0226 -0.6980 -1.1953
24 6 1.1537 -1.1099 -2.1704
25 1 0.1398 -1.3776 -1.9121
26 6 1.5762 -1.1835 -3.4906
27 7 2.6870 -0.5822 -3.8605
28 14 0.5683 -2.1360 -4.7421
29 1 -0.7921 -1.5477 -4.8331
30 1 1.2298 -2.0625 -6.0696
31 1 0.4664 -3.5557 -4.3184
32 1 -0.3633 -1.0276 0.0050
33 1 -0.3633 0.5182 0.8875
34 1 -0.3633 0.5094 -0.8924
35 1 1.6031 -1.7270 1.2892
36 1 1.7661 -0.1695 2.1367
37 1 3.9379 -1.3474 2.0651
38 1 4.0062 0.1460 1.0995
39 1 5.9809 -1.1476 0.3131
40 1 7.8154 -1.2055 0.3093
41 1 12.9363 -5.9737 -1.5515
42 1 7.4094 -4.8113 -1.9866
43 1 3.9903 0.0038 -1.4317
44 1 3.6518 -1.5689 -2.1992
45 1 2.9821 -0.6333 -4.7831
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071628512.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:03
Heat of formation + Delta-G solvation = 10.286785 kcal
Electronic energy + Delta-G solvation = -29918.136601 eV
Core-core repulsion = 25743.507024 eV
Total energy + Delta-G solvation = -4174.629576 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-43.60332 -41.22889 -39.83128 -39.06077 -37.91152 -36.05518 -34.94386 -34.62802
-32.90059 -32.11889 -31.69618 -30.40349 -27.72951 -26.83545 -25.26712 -24.85309
-23.93106 -23.08107 -22.34239 -21.66138 -20.93945 -20.39419 -19.39475 -19.11475
-18.30711 -17.87062 -17.48615 -17.22617 -16.76811 -16.46740 -16.01793 -15.78322
-15.45688 -15.38496 -15.07033 -14.92473 -14.81322 -14.42449 -14.27244 -14.03019
-13.49462 -13.43723 -13.40692 -13.02465 -12.73459 -12.67383 -12.53793 -12.45389
-12.25426 -12.18527 -12.10254 -11.94484 -11.62721 -11.41710 -11.13055 -11.06918
-10.50023 -10.47615 -10.26016 -10.00194 -9.71531 -8.56978 -7.82262 -5.27936
-0.56684 -0.40926 0.93386 1.34652 1.42148 1.48101 1.51696 1.76272
1.99811 2.45529 2.53826 2.66668 3.05537 3.34059 3.42970 3.56822
3.66677 3.72590 3.80687 3.99646 4.13215 4.16379 4.31715 4.45090
4.47159 4.67313 4.76039 4.77032 4.80916 4.88980 4.94896 5.05668
5.13735 5.15973 5.24742 5.35880 5.39290 5.49693 5.59312 5.66427
5.66594 5.74485 5.85637 6.33633 6.39659 6.44592 6.58144 6.62840
7.19272 7.26914 7.94717 8.43222 9.22348
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.014858 B = 0.002670 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.060089 B =10483.380972 C =11868.290926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.153 3.847
3 H 0.024 0.976
4 C -0.118 4.118
5 C -0.108 4.108
6 C 0.132 3.868
7 H 0.054 0.946
8 N -0.697 5.697
9 C 0.562 3.438
10 O -0.579 6.579
11 C -0.191 4.191
12 C 0.188 3.812
13 N -0.479 5.479
14 C 0.265 3.735
15 N -0.568 5.568
16 H 0.447 0.553
17 C 0.489 3.511
18 O -0.431 6.431
19 N -0.511 5.511
20 C -0.011 4.011
21 C 0.032 3.968
22 C 0.178 3.822
23 N -0.603 5.603
24 C -0.249 4.249
25 H 0.073 0.927
26 C -0.052 4.052
27 N -0.932 5.932
28 Si 0.953 3.047
29 H -0.269 1.269
30 H -0.298 1.298
31 H -0.286 1.286
32 H 0.045 0.955
33 H 0.078 0.922
34 H 0.036 0.964
35 H 0.051 0.949
36 H 0.096 0.904
37 H 0.089 0.911
38 H 0.078 0.922
39 H 0.414 0.586
40 H 0.209 0.791
41 H 0.441 0.559
42 H 0.141 0.859
43 H 0.002 0.998
44 H 0.040 0.960
45 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.417 -2.697 15.176 24.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.048 3.952
3 H 0.041 0.959
4 C -0.158 4.158
5 C -0.146 4.146
6 C 0.026 3.974
7 H 0.072 0.928
8 N -0.348 5.348
9 C 0.349 3.651
10 O -0.459 6.459
11 C -0.199 4.199
12 C 0.019 3.981
13 N -0.192 5.192
14 C 0.027 3.973
15 N -0.198 5.198
16 H 0.291 0.709
17 C 0.182 3.818
18 O -0.237 6.237
19 N -0.243 5.243
20 C -0.130 4.130
21 C 0.004 3.996
22 C 0.051 3.949
23 N -0.327 5.327
24 C -0.379 4.379
25 H 0.090 0.910
26 C -0.248 4.248
27 N -0.578 5.578
28 Si 0.782 3.218
29 H -0.194 1.194
30 H -0.225 1.225
31 H -0.213 1.213
32 H 0.064 0.936
33 H 0.097 0.903
34 H 0.055 0.945
35 H 0.070 0.930
36 H 0.114 0.886
37 H 0.108 0.892
38 H 0.096 0.904
39 H 0.253 0.747
40 H 0.225 0.775
41 H 0.306 0.694
42 H 0.159 0.841
43 H 0.020 0.980
44 H 0.058 0.942
45 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges 19.359 -3.144 14.046 24.123
hybrid contribution 0.024 -0.428 -0.927 1.021
sum 19.383 -3.573 13.120 23.677
Atomic orbital electron populations
1.21741 0.95006 1.01063 1.00958 1.20820 0.94141 0.93492 0.86772
0.95880 1.21951 0.94796 1.00811 0.98206 1.21669 0.96928 1.00219
0.95768 1.21573 0.78648 0.99413 0.97803 0.92768 1.45715 1.07954
1.26428 1.54736 1.18176 0.87297 0.81499 0.78102 1.90824 1.64058
1.44224 1.46790 1.20545 0.93534 0.99452 1.06365 1.23216 0.85900
0.96309 0.92635 1.66533 1.12026 1.21109 1.19526 1.18869 0.85865
0.94112 0.98412 1.42911 1.06363 1.24346 1.46156 0.70889 1.20181
0.87223 0.84415 0.89942 1.84855 1.35810 1.55217 1.47855 1.70706
0.98386 1.28674 1.26551 1.19351 0.94142 0.95993 1.03519 1.20847
0.91144 0.95739 0.91894 1.20785 0.83748 0.95440 0.94936 1.44309
1.02577 1.65746 1.20096 1.19404 0.95507 1.36475 0.86557 0.90956
1.25769 0.99104 1.00916 0.98977 1.70143 1.25778 1.45605 1.16284
0.85545 0.78774 0.79040 0.78396 1.19408 1.22480 1.21289 0.93635
0.90308 0.94500 0.93004 0.88551 0.89207 0.90366 0.74712 0.77474
0.69439 0.84113 0.97978 0.94174 0.94750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.62 7.95 71.98 0.57 -4.05 16
2 C 0.15 5.91 3.50 44.98 0.16 6.07 16
3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16
4 C -0.12 -3.49 5.37 30.67 0.16 -3.32 16
5 C -0.11 -2.92 5.35 30.62 0.16 -2.75 16
6 C 0.13 4.86 2.61 45.07 0.12 4.98 16
7 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16
8 N -0.70 -20.80 5.03 -445.20 -2.24 -23.04 16
9 C 0.56 19.68 7.74 86.74 0.67 20.35 16
10 O -0.58 -26.80 16.06 -3.97 -0.06 -26.86 16
11 C -0.19 -5.32 5.89 -20.01 -0.12 -5.44 16
12 C 0.19 3.88 10.69 85.16 0.91 4.79 16
13 N -0.48 -10.25 10.36 -191.60 -1.99 -12.24 16
14 C 0.26 5.87 8.45 133.83 1.13 7.00 16
15 N -0.57 -8.28 6.23 -306.99 -1.91 -10.19 16
16 H 0.45 3.13 8.96 -92.71 -0.83 2.30 16
17 C 0.49 8.23 9.39 179.72 1.69 9.91 16
18 O -0.43 -3.94 13.63 -85.47 -1.16 -5.10 16
19 N -0.51 -13.06 11.32 -306.40 -3.47 -16.53 16
20 C -0.01 -0.29 7.22 39.42 0.28 0.00 16
21 C 0.03 0.95 9.75 22.92 0.22 1.17 16
22 C 0.18 8.70 4.86 86.36 0.42 9.12 16
23 N -0.60 -30.10 2.99 -675.23 -2.02 -32.12 16
24 C -0.25 -13.92 8.57 84.03 0.72 -13.20 16
25 H 0.07 3.91 6.24 -2.91 -0.02 3.89 16
26 C -0.05 -3.08 4.94 84.86 0.42 -2.66 16
27 N -0.93 -57.97 11.23 21.65 0.24 -57.72 16
28 Si 0.95 47.99 29.58 68.60 2.03 50.02 16
29 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
30 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16
31 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16
32 H 0.04 1.66 7.44 -2.39 -0.02 1.64 16
33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
34 H 0.04 1.46 7.63 -2.39 -0.02 1.44 16
35 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16
36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16
37 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16
38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
39 H 0.41 8.28 6.64 -92.71 -0.62 7.67 16
40 H 0.21 2.57 6.39 -2.91 -0.02 2.55 16
41 H 0.44 -1.30 9.06 -74.05 -0.67 -1.97 16
42 H 0.14 4.59 7.72 -2.91 -0.02 4.57 16
43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16
44 H 0.04 2.39 6.15 -2.39 -0.01 2.38 16
45 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16
Total: -1.00 -86.37 369.14 -4.09 -90.45
By element:
Atomic # 1 Polarization: 12.39 SS G_CDS: -1.03 Total: 11.36 kcal
Atomic # 6 Polarization: 24.45 SS G_CDS: 7.52 Total: 31.97 kcal
Atomic # 7 Polarization: -140.46 SS G_CDS: -11.38 Total: -151.84 kcal
Atomic # 8 Polarization: -30.74 SS G_CDS: -1.23 Total: -31.97 kcal
Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal
Total: -86.37 -4.09 -90.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071628512.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.740 kcal
(2) G-P(sol) polarization free energy of solvation -86.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds