Wall clock time and date at job start Wed Apr 1 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.58698 * 2 1 4 4 C 1.53189 * 109.70654 * 120.36245 * 2 1 3 5 5 C 1.53038 * 109.31346 * 174.48860 * 4 2 1 6 6 C 1.53076 * 109.66080 * 298.69886 * 5 4 2 7 7 H 1.08994 * 109.38696 * 301.27782 * 6 5 4 8 8 N 1.46500 * 109.62495 * 181.16932 * 6 5 4 9 9 C 1.34770 * 120.00061 * 155.11121 * 8 6 5 10 10 O 1.21558 * 120.00099 * 359.97438 * 9 8 6 11 11 C 1.47849 * 120.00101 * 180.02562 * 9 8 6 12 12 C 1.39720 * 119.43811 * 179.72270 * 11 9 8 13 13 C 1.37000 * 119.58769 * 179.73217 * 12 11 9 14 14 C 1.39889 * 118.37242 * 0.55914 * 13 12 11 15 15 N 1.35430 * 133.68697 * 179.72536 * 14 13 12 16 16 C 1.30924 * 109.56868 * 179.97438 * 15 14 13 17 17 O 1.35180 * 124.99676 * 179.97438 * 16 15 14 18 18 N 1.36384 * 110.01082 * 0.02562 * 16 15 14 19 19 H 0.97006 * 126.32528 * 179.97438 * 18 16 15 20 20 C 1.38258 * 107.35766 * 359.97438 * 18 16 15 21 21 N 1.31767 * 133.71468 * 179.97438 * 20 18 16 22 22 C 1.53192 * 109.29438 * 61.15319 * 6 5 4 23 23 N 1.46927 * 108.89346 * 305.58073 * 22 6 5 24 24 C 1.36936 * 120.62987 * 233.56030 * 23 22 6 25 25 H 1.08008 * 119.99918 * 150.15259 * 24 23 22 26 26 C 1.38810 * 119.99964 * 330.14992 * 24 23 22 27 27 N 1.31613 * 120.00273 * 344.50287 * 26 24 23 28 28 Si 1.86803 * 119.99828 * 164.49577 * 26 24 23 29 29 H 1.48498 * 109.47234 * 90.00142 * 28 26 24 30 30 H 1.48503 * 109.47064 * 210.00127 * 28 26 24 31 31 H 1.48502 * 109.47357 * 330.00436 * 28 26 24 32 32 H 1.09000 * 109.47252 * 180.27996 * 1 2 3 33 33 H 1.09008 * 109.46671 * 300.28038 * 1 2 3 34 34 H 1.08999 * 109.47465 * 60.27689 * 1 2 3 35 35 H 1.08995 * 109.49523 * 294.43799 * 4 2 1 36 36 H 1.09004 * 109.49624 * 54.53788 * 4 2 1 37 37 H 1.09003 * 109.45937 * 58.65315 * 5 4 2 38 38 H 1.08998 * 109.45878 * 178.62548 * 5 4 2 39 39 H 0.97007 * 119.99701 * 335.10594 * 8 6 5 40 40 H 1.07993 * 120.20455 * 0.02562 * 12 11 9 41 41 H 1.07999 * 120.81632 * 180.24887 * 13 12 11 42 42 H 0.96705 * 114.00305 * 90.02399 * 17 16 15 43 43 H 1.08996 * 109.58740 * 185.72190 * 22 6 5 44 44 H 1.09000 * 109.58940 * 65.43595 * 22 6 5 45 45 H 0.96997 * 120.00271 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7290 1.2444 5 6 3.5706 -0.8445 1.1671 6 6 3.9634 -1.6593 -0.0678 7 1 3.5089 -2.6482 -0.0083 8 7 5.4211 -1.7931 -0.1257 9 6 5.9770 -2.8317 -0.7803 10 8 5.2689 -3.6579 -1.3221 11 6 7.4482 -2.9671 -0.8383 12 6 8.0118 -4.0517 -1.5151 13 6 9.3748 -4.1771 -1.5754 14 6 10.1602 -3.2096 -0.9398 15 7 11.4956 -3.0329 -0.8002 16 6 11.7239 -1.9493 -0.1017 17 8 12.9493 -1.4803 0.2235 18 7 10.5435 -1.3638 0.2505 19 1 10.4376 -0.5511 0.7695 20 6 9.5258 -2.1424 -0.2685 21 7 8.2110 -2.0595 -0.2405 22 6 3.4653 -0.9424 -1.3267 23 7 2.0225 -0.6979 -1.1955 24 6 1.1532 -1.1131 -2.1687 25 1 0.1401 -1.3826 -1.9087 26 6 1.5740 -1.1877 -3.4894 27 7 2.6829 -0.5844 -3.8618 28 14 0.5666 -2.1445 -4.7380 29 1 -0.4301 -1.2410 -5.3668 30 1 1.4666 -2.6933 -5.7841 31 1 -0.1375 -3.2599 -4.0559 32 1 -0.3634 -1.0276 0.0050 33 1 -0.3633 0.5182 0.8875 34 1 -0.3634 0.5095 -0.8924 35 1 1.7690 -0.1674 2.1363 36 1 1.6080 -1.7258 1.2903 37 1 4.0071 0.1518 1.0962 38 1 3.9429 -1.3412 2.0631 39 1 5.9862 -1.1339 0.3070 40 1 7.3772 -4.7840 -1.9917 41 1 9.8316 -5.0053 -2.0967 42 1 13.3209 -0.8672 -0.4256 43 1 3.6522 -1.5664 -2.2006 44 1 3.9882 0.0075 -1.4373 45 1 2.9768 -0.6362 -4.7847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071772192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:16 Heat of formation + Delta-G solvation = 41.599977 kcal Electronic energy + Delta-G solvation = -30028.788817 eV Core-core repulsion = 25855.517082 eV Total energy + Delta-G solvation = -4173.271735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.71480 -39.98402 -38.76311 -37.69398 -36.97357 -34.52995 -34.05096 -32.79360 -31.69177 -30.81231 -29.90219 -29.44360 -26.13549 -25.12736 -24.39106 -23.52507 -22.26438 -22.14037 -21.11570 -20.19896 -19.64457 -19.34526 -18.37176 -17.77988 -17.48947 -16.41417 -16.36803 -15.67960 -15.29096 -15.13472 -14.87116 -14.34441 -14.14364 -13.77779 -13.73136 -13.56393 -13.34155 -13.29398 -12.78871 -12.56423 -12.37621 -12.32930 -11.83751 -11.61886 -11.43513 -11.37954 -11.09833 -10.87741 -10.67095 -10.52146 -10.38526 -10.23846 -10.06234 -9.92838 -9.66856 -9.43073 -9.35838 -9.26457 -8.76667 -8.48956 -8.39060 -6.57473 -5.71407 -3.15988 0.13038 0.95811 1.65620 2.06145 2.94350 3.10700 3.39202 3.44860 3.51581 3.53847 3.81592 3.89660 4.26112 4.50857 4.56168 4.78715 4.84836 5.33153 5.36864 5.39574 5.43404 5.50802 5.59705 5.69239 5.71557 5.82259 5.98820 6.09727 6.13692 6.24222 6.29607 6.32627 6.41507 6.47168 6.51758 6.65185 6.76067 6.91558 6.98096 7.07056 7.15075 7.17263 7.31700 7.40713 7.75841 7.88226 7.94407 8.51517 8.55762 9.27351 9.91666 10.47429 11.36804 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.002725 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.410037 B =10271.482199 C =11374.451915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.697 5.697 9 C 0.567 3.433 10 O -0.518 6.518 11 C 0.135 3.865 12 C -0.119 4.119 13 C -0.026 4.026 14 C 0.031 3.969 15 N -0.479 5.479 16 C 0.471 3.529 17 O -0.438 6.438 18 N -0.586 5.586 19 H 0.430 0.570 20 C 0.248 3.752 21 N -0.452 5.452 22 C 0.169 3.831 23 N -0.583 5.583 24 C -0.253 4.253 25 H 0.070 0.930 26 C 0.007 3.993 27 N -0.900 5.900 28 Si 0.900 3.100 29 H -0.288 1.288 30 H -0.290 1.290 31 H -0.279 1.279 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.402 0.598 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.415 0.585 43 H 0.094 0.906 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.857 -0.182 10.074 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.103 0.897 8 N -0.346 5.346 9 C 0.350 3.650 10 O -0.393 6.393 11 C -0.014 4.014 12 C -0.142 4.142 13 C -0.054 4.054 14 C -0.091 4.091 15 N -0.211 5.211 16 C 0.166 3.834 17 O -0.240 6.240 18 N -0.214 5.214 19 H 0.270 0.730 20 C 0.010 3.990 21 N -0.169 5.169 22 C 0.042 3.958 23 N -0.306 5.306 24 C -0.382 4.382 25 H 0.087 0.913 26 C -0.192 4.192 27 N -0.544 5.544 28 Si 0.730 3.270 29 H -0.215 1.215 30 H -0.216 1.216 31 H -0.204 1.204 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.236 0.764 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.274 0.726 43 H 0.112 0.888 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.681 -0.927 10.116 19.530 hybrid contribution 0.052 0.715 -0.612 0.942 sum 16.733 -0.212 9.504 19.245 Atomic orbital electron populations 1.21798 0.95980 1.01387 1.00197 1.20495 0.93072 0.93568 0.87074 0.95790 1.22039 0.94221 1.01360 0.98913 1.21676 0.97389 0.99699 0.96644 1.22082 0.77353 1.01163 0.98500 0.89748 1.45932 1.08701 1.26222 1.53789 1.17586 0.85111 0.82500 0.79818 1.90863 1.61248 1.42146 1.45022 1.21203 0.93817 0.91029 0.95325 1.21669 0.94744 0.98801 0.99000 1.20469 0.91803 0.96918 0.96175 1.19638 0.89728 0.97418 1.02289 1.70629 1.15204 1.16120 1.19099 1.20190 0.80261 0.89311 0.93666 1.84822 1.23989 1.65563 1.49608 1.43009 1.04661 1.25510 1.48248 0.72968 1.18455 0.88082 0.93259 0.99220 1.66217 1.02657 1.28204 1.19776 1.21060 0.83598 0.96961 0.94195 1.44012 1.02529 1.64797 1.19264 1.19112 0.95112 1.38046 0.85959 0.91271 1.25086 0.97793 0.99294 0.97063 1.70000 1.24174 1.43588 1.16603 0.86341 0.79328 0.80046 0.81310 1.21547 1.21563 1.20396 0.92783 0.94387 0.91978 0.92669 0.92008 0.92266 0.93022 0.76352 0.82011 0.83044 0.72576 0.88831 0.96442 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.96 37.16 0.30 -2.25 16 2 C 0.16 3.35 3.49 -67.60 -0.24 3.12 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.12 5.38 -26.61 -0.14 -2.27 16 5 C -0.12 -1.88 5.36 -26.67 -0.14 -2.02 16 6 C 0.11 2.22 2.61 -67.79 -0.18 2.04 16 7 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 8 N -0.70 -11.88 5.07 -54.62 -0.28 -12.15 16 9 C 0.57 10.17 7.76 -12.33 -0.10 10.08 16 10 O -0.52 -11.09 15.95 5.31 0.08 -11.01 16 11 C 0.13 2.00 6.74 -82.97 -0.56 1.45 16 12 C -0.12 -1.52 9.55 -39.48 -0.38 -1.90 16 13 C -0.03 -0.29 10.16 -39.41 -0.40 -0.69 16 14 C 0.03 0.38 7.24 -84.56 -0.61 -0.23 16 15 N -0.48 -5.64 11.30 -12.11 -0.14 -5.78 16 16 C 0.47 4.23 9.38 -88.78 -0.83 3.40 16 17 O -0.44 -2.45 13.62 -17.24 -0.23 -2.69 16 18 N -0.59 -5.12 6.25 -13.33 -0.08 -5.21 16 19 H 0.43 2.46 8.96 -40.82 -0.37 2.09 16 20 C 0.25 3.03 8.46 -155.51 -1.32 1.72 16 21 N -0.45 -6.18 9.54 -8.77 -0.08 -6.27 16 22 C 0.17 4.08 4.85 -3.71 -0.02 4.06 16 23 N -0.58 -14.43 2.99 -164.77 -0.49 -14.93 16 24 C -0.25 -6.88 8.57 -15.06 -0.13 -7.01 16 25 H 0.07 1.83 6.24 -52.48 -0.33 1.51 16 26 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 27 N -0.90 -26.57 11.23 55.49 0.62 -25.95 16 28 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 31 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 32 H 0.05 1.02 7.43 -51.93 -0.39 0.64 16 33 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 5.92 7.91 -40.82 -0.32 5.60 16 40 H 0.16 1.95 7.61 -52.49 -0.40 1.55 16 41 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.41 0.03 9.06 45.56 0.41 0.44 16 43 H 0.09 2.65 6.15 -51.93 -0.32 2.33 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -35.23 371.24 -9.88 -45.11 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.01 Total: 6.44 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -4.83 Total: 9.58 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.45 Total: -70.28 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.15 Total: -13.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.23 -9.88 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.708 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds