Wall clock time and date at job start Wed Apr 1 2020 04:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.58698 * 2 1 4 4 C 1.53189 * 109.70654 * 120.36245 * 2 1 3 5 5 C 1.53038 * 109.31346 * 174.48860 * 4 2 1 6 6 C 1.53076 * 109.66080 * 298.69886 * 5 4 2 7 7 H 1.08994 * 109.38696 * 301.27782 * 6 5 4 8 8 N 1.46500 * 109.62495 * 181.16932 * 6 5 4 9 9 C 1.34770 * 120.00061 * 155.11121 * 8 6 5 10 10 O 1.21558 * 120.00099 * 359.97438 * 9 8 6 11 11 C 1.47849 * 120.00101 * 180.02562 * 9 8 6 12 12 C 1.39720 * 119.43811 * 179.72270 * 11 9 8 13 13 C 1.37000 * 119.58769 * 179.73217 * 12 11 9 14 14 C 1.39889 * 118.37242 * 0.55914 * 13 12 11 15 15 N 1.35430 * 133.68697 * 179.72536 * 14 13 12 16 16 C 1.30924 * 109.56868 * 179.97438 * 15 14 13 17 17 O 1.35180 * 124.99676 * 179.97438 * 16 15 14 18 18 N 1.36384 * 110.01082 * 0.02562 * 16 15 14 19 19 H 0.97006 * 126.32528 * 179.97438 * 18 16 15 20 20 C 1.38258 * 107.35766 * 359.97438 * 18 16 15 21 21 N 1.31767 * 133.71468 * 179.97438 * 20 18 16 22 22 C 1.53192 * 109.29438 * 61.15319 * 6 5 4 23 23 N 1.46927 * 108.89346 * 305.58073 * 22 6 5 24 24 C 1.36936 * 120.62987 * 233.56030 * 23 22 6 25 25 H 1.08008 * 119.99918 * 150.15259 * 24 23 22 26 26 C 1.38810 * 119.99964 * 330.14992 * 24 23 22 27 27 N 1.31613 * 120.00273 * 344.50287 * 26 24 23 28 28 Si 1.86803 * 119.99828 * 164.49577 * 26 24 23 29 29 H 1.48498 * 109.47234 * 90.00142 * 28 26 24 30 30 H 1.48503 * 109.47064 * 210.00127 * 28 26 24 31 31 H 1.48502 * 109.47357 * 330.00436 * 28 26 24 32 32 H 1.09000 * 109.47252 * 180.27996 * 1 2 3 33 33 H 1.09008 * 109.46671 * 300.28038 * 1 2 3 34 34 H 1.08999 * 109.47465 * 60.27689 * 1 2 3 35 35 H 1.08995 * 109.49523 * 294.43799 * 4 2 1 36 36 H 1.09004 * 109.49624 * 54.53788 * 4 2 1 37 37 H 1.09003 * 109.45937 * 58.65315 * 5 4 2 38 38 H 1.08998 * 109.45878 * 178.62548 * 5 4 2 39 39 H 0.97007 * 119.99701 * 335.10594 * 8 6 5 40 40 H 1.07993 * 120.20455 * 0.02562 * 12 11 9 41 41 H 1.07999 * 120.81632 * 180.24887 * 13 12 11 42 42 H 0.96705 * 114.00305 * 90.02399 * 17 16 15 43 43 H 1.08996 * 109.58740 * 185.72190 * 22 6 5 44 44 H 1.09000 * 109.58940 * 65.43595 * 22 6 5 45 45 H 0.96997 * 120.00271 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7290 1.2444 5 6 3.5706 -0.8445 1.1671 6 6 3.9634 -1.6593 -0.0678 7 1 3.5089 -2.6482 -0.0083 8 7 5.4211 -1.7931 -0.1257 9 6 5.9770 -2.8317 -0.7803 10 8 5.2689 -3.6579 -1.3221 11 6 7.4482 -2.9671 -0.8383 12 6 8.0118 -4.0517 -1.5151 13 6 9.3748 -4.1771 -1.5754 14 6 10.1602 -3.2096 -0.9398 15 7 11.4956 -3.0329 -0.8002 16 6 11.7239 -1.9493 -0.1017 17 8 12.9493 -1.4803 0.2235 18 7 10.5435 -1.3638 0.2505 19 1 10.4376 -0.5511 0.7695 20 6 9.5258 -2.1424 -0.2685 21 7 8.2110 -2.0595 -0.2405 22 6 3.4653 -0.9424 -1.3267 23 7 2.0225 -0.6979 -1.1955 24 6 1.1532 -1.1131 -2.1687 25 1 0.1401 -1.3826 -1.9087 26 6 1.5740 -1.1877 -3.4894 27 7 2.6829 -0.5844 -3.8618 28 14 0.5666 -2.1445 -4.7380 29 1 -0.4301 -1.2410 -5.3668 30 1 1.4666 -2.6933 -5.7841 31 1 -0.1375 -3.2599 -4.0559 32 1 -0.3634 -1.0276 0.0050 33 1 -0.3633 0.5182 0.8875 34 1 -0.3634 0.5095 -0.8924 35 1 1.7690 -0.1674 2.1363 36 1 1.6080 -1.7258 1.2903 37 1 4.0071 0.1518 1.0962 38 1 3.9429 -1.3412 2.0631 39 1 5.9862 -1.1339 0.3070 40 1 7.3772 -4.7840 -1.9917 41 1 9.8316 -5.0053 -2.0967 42 1 13.3209 -0.8672 -0.4256 43 1 3.6522 -1.5664 -2.2006 44 1 3.9882 0.0075 -1.4373 45 1 2.9768 -0.6362 -4.7847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:15 Heat of formation + Delta-G solvation = 11.939989 kcal Electronic energy + Delta-G solvation = -30030.074970 eV Core-core repulsion = 25855.517082 eV Total energy + Delta-G solvation = -4174.557888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.56529 -41.26029 -39.86272 -39.06560 -37.85521 -36.08231 -35.00350 -34.62359 -32.71134 -32.17634 -31.74007 -30.56335 -27.77053 -26.86563 -25.49713 -24.51888 -23.96365 -22.93931 -22.48654 -21.66562 -21.01032 -20.38861 -19.41471 -18.65156 -18.51544 -18.29213 -17.34968 -17.18535 -16.74188 -16.26089 -16.11841 -15.75249 -15.65569 -15.36072 -15.14764 -14.95020 -14.54795 -14.41873 -14.27017 -14.09032 -13.49764 -13.33806 -13.25050 -13.05663 -12.75484 -12.68270 -12.52842 -12.47961 -12.31003 -12.24115 -12.11456 -11.98199 -11.67216 -11.47973 -11.20966 -11.11193 -10.51637 -10.50411 -10.16532 -10.12813 -9.62126 -8.59605 -7.83107 -5.29516 -0.82023 0.01366 0.89377 1.18157 1.43153 1.47458 1.55134 1.78740 2.02442 2.39990 2.53064 2.69505 3.02854 3.28798 3.34511 3.65948 3.74106 3.82520 3.88734 3.97112 4.10213 4.26641 4.40330 4.47248 4.50459 4.61920 4.72372 4.80592 4.85911 4.89795 4.90634 5.02193 5.07914 5.19613 5.30158 5.30224 5.33049 5.44249 5.56690 5.62695 5.64574 5.72971 5.80231 6.23694 6.36307 6.43825 6.54024 6.65137 7.14688 7.20520 7.91716 8.41894 9.22337 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.002725 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.410037 B =10271.482199 C =11374.451915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.059 0.941 8 N -0.689 5.689 9 C 0.565 3.435 10 O -0.563 6.563 11 C 0.108 3.892 12 C -0.120 4.120 13 C -0.020 4.020 14 C 0.029 3.971 15 N -0.510 5.510 16 C 0.499 3.501 17 O -0.432 6.432 18 N -0.573 5.573 19 H 0.444 0.556 20 C 0.233 3.767 21 N -0.453 5.453 22 C 0.182 3.818 23 N -0.602 5.602 24 C -0.250 4.250 25 H 0.075 0.925 26 C -0.053 4.053 27 N -0.934 5.934 28 Si 0.957 3.043 29 H -0.280 1.280 30 H -0.299 1.299 31 H -0.271 1.271 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.415 0.585 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.442 0.558 43 H 0.044 0.956 44 H -0.005 1.005 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.367 0.360 12.531 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.156 4.156 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.078 0.922 8 N -0.339 5.339 9 C 0.350 3.650 10 O -0.441 6.441 11 C -0.039 4.039 12 C -0.143 4.143 13 C -0.048 4.048 14 C -0.093 4.093 15 N -0.242 5.242 16 C 0.194 3.806 17 O -0.238 6.238 18 N -0.202 5.202 19 H 0.288 0.712 20 C -0.006 4.006 21 N -0.169 5.169 22 C 0.054 3.946 23 N -0.326 5.326 24 C -0.381 4.381 25 H 0.093 0.907 26 C -0.248 4.248 27 N -0.580 5.580 28 Si 0.786 3.214 29 H -0.207 1.207 30 H -0.226 1.226 31 H -0.196 1.196 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.252 0.748 40 H 0.180 0.820 41 H 0.197 0.803 42 H 0.307 0.693 43 H 0.062 0.938 44 H 0.013 0.987 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.207 -0.317 12.625 22.159 hybrid contribution -0.196 0.654 -1.292 1.461 sum 18.012 0.337 11.334 21.284 Atomic orbital electron populations 1.21727 0.94652 1.01222 1.01027 1.20817 0.94357 0.93341 0.86761 0.96220 1.21941 0.94261 1.01046 0.98334 1.21652 0.97256 0.99879 0.95788 1.21639 0.78509 0.99669 0.97894 0.92238 1.45784 1.07893 1.26510 1.53728 1.18067 0.86533 0.81787 0.78594 1.90825 1.62797 1.43711 1.46774 1.20702 0.92091 0.92929 0.98166 1.21681 0.95570 0.98248 0.98832 1.20704 0.90917 0.97449 0.95693 1.19921 0.90329 0.97375 1.01687 1.70665 1.14594 1.17819 1.21166 1.20291 0.81175 0.88168 0.90997 1.84811 1.22125 1.66240 1.50633 1.42972 1.03701 1.25630 1.47929 0.71183 1.18599 0.87909 0.94176 0.99959 1.66057 1.03455 1.27823 1.19603 1.20725 0.83819 0.95202 0.94807 1.44307 1.02389 1.65680 1.20233 1.19456 0.95567 1.36489 0.86551 0.90750 1.25817 0.99106 1.00891 0.99022 1.70164 1.25988 1.45616 1.16246 0.85423 0.77936 0.79014 0.79037 1.20698 1.22557 1.19611 0.93411 0.90320 0.94338 0.88588 0.92631 0.91137 0.89728 0.74809 0.82028 0.80278 0.69287 0.93788 0.98686 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.96 71.98 0.57 -4.05 16 2 C 0.15 6.08 3.49 44.97 0.16 6.23 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -3.63 5.38 30.67 0.17 -3.46 16 5 C -0.11 -3.27 5.36 30.63 0.16 -3.10 16 6 C 0.13 5.11 2.61 45.08 0.12 5.22 16 7 H 0.06 2.67 7.58 -2.39 -0.02 2.66 16 8 N -0.69 -24.06 5.07 -444.99 -2.26 -26.31 16 9 C 0.57 21.29 7.76 86.79 0.67 21.96 16 10 O -0.56 -25.76 15.95 -3.90 -0.06 -25.82 16 11 C 0.11 3.30 6.74 41.90 0.28 3.58 16 12 C -0.12 -3.13 9.55 22.34 0.21 -2.91 16 13 C -0.02 -0.44 10.16 22.38 0.23 -0.22 16 14 C 0.03 0.67 7.24 39.70 0.29 0.96 16 15 N -0.51 -10.89 11.30 -306.04 -3.46 -14.35 16 16 C 0.50 7.53 9.38 179.71 1.69 9.21 16 17 O -0.43 -3.25 13.62 -84.60 -1.15 -4.40 16 18 N -0.57 -8.61 6.25 -307.04 -1.92 -10.53 16 19 H 0.44 3.85 8.96 -92.70 -0.83 3.02 16 20 C 0.23 5.40 8.46 134.00 1.13 6.53 16 21 N -0.45 -12.23 9.54 -181.67 -1.73 -13.97 16 22 C 0.18 9.20 4.85 86.36 0.42 9.61 16 23 N -0.60 -30.60 2.99 -675.22 -2.02 -32.62 16 24 C -0.25 -14.02 8.57 84.03 0.72 -13.30 16 25 H 0.07 4.01 6.24 -2.91 -0.02 3.99 16 26 C -0.05 -3.12 4.94 84.86 0.42 -2.70 16 27 N -0.93 -58.11 11.23 21.65 0.24 -57.87 16 28 Si 0.96 47.46 29.58 68.60 2.03 49.49 16 29 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 30 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 31 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 32 H 0.05 1.75 7.43 -2.39 -0.02 1.73 16 33 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.04 1.53 7.63 -2.39 -0.02 1.51 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 12.15 7.91 -92.70 -0.73 11.41 16 40 H 0.16 4.12 7.61 -2.91 -0.02 4.10 16 41 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.44 -1.73 9.06 -74.05 -0.67 -2.40 16 43 H 0.04 2.66 6.15 -2.39 -0.01 2.65 16 44 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -81.58 371.24 -4.24 -85.82 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -1.15 Total: 16.98 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 7.24 Total: 33.56 kcal Atomic # 7 Polarization: -144.50 SS G_CDS: -11.14 Total: -155.64 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.21 Total: -30.22 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -81.58 -4.24 -85.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.762 kcal (2) G-P(sol) polarization free energy of solvation -81.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds