Wall clock time and date at job start Wed Apr 1 2020 04:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.70108 * 2 1 4 4 C 1.53192 * 109.58355 * 239.64562 * 2 1 3 5 5 C 1.53045 * 109.31007 * 185.57983 * 4 2 1 6 6 C 1.53040 * 109.53895 * 61.36452 * 5 4 2 7 7 H 1.08994 * 109.52045 * 178.66752 * 6 5 4 8 8 N 1.46498 * 109.49507 * 58.58936 * 6 5 4 9 9 C 1.34773 * 120.00051 * 155.16481 * 8 6 5 10 10 O 1.21564 * 120.00058 * 359.97438 * 9 8 6 11 11 C 1.47851 * 120.00352 * 179.97438 * 9 8 6 12 12 C 1.39715 * 119.44056 * 179.97438 * 11 9 8 13 13 C 1.36997 * 119.59304 * 179.80899 * 12 11 9 14 14 C 1.39891 * 118.37136 * 0.41295 * 13 12 11 15 15 N 1.35421 * 133.68892 * 179.91064 * 14 13 12 16 16 C 1.30934 * 109.57047 * 179.70832 * 15 14 13 17 17 O 1.35181 * 124.99584 * 179.97438 * 16 15 14 18 18 N 1.36390 * 110.00482 * 359.97438 * 16 15 14 19 19 H 0.96994 * 126.31634 * 180.02562 * 18 16 15 20 20 C 1.38255 * 107.36050 * 0.02562 * 18 16 15 21 21 N 1.31766 * 133.71438 * 180.02562 * 20 18 16 22 22 C 1.53185 * 109.31282 * 298.63382 * 6 5 4 23 23 N 1.46928 * 109.58476 * 120.36014 * 2 1 3 24 24 C 1.36930 * 120.63174 * 353.41098 * 23 2 1 25 25 H 1.08000 * 119.99794 * 29.00970 * 24 23 2 26 26 C 1.38812 * 120.00361 * 209.00878 * 24 23 2 27 27 N 1.31620 * 119.99854 * 15.01992 * 26 24 23 28 28 Si 1.86798 * 120.00443 * 195.02010 * 26 24 23 29 29 H 1.48501 * 109.46868 * 89.99951 * 28 26 24 30 30 H 1.48496 * 109.47389 * 209.99702 * 28 26 24 31 31 H 1.48499 * 109.47344 * 330.00443 * 28 26 24 32 32 H 1.08998 * 109.46873 * 299.64568 * 1 2 3 33 33 H 1.09003 * 109.47092 * 59.64037 * 1 2 3 34 34 H 1.09001 * 109.47361 * 179.64589 * 1 2 3 35 35 H 1.08999 * 109.49787 * 305.52867 * 4 2 1 36 36 H 1.08998 * 109.50024 * 65.59627 * 4 2 1 37 37 H 1.09003 * 109.46102 * 301.34088 * 5 4 2 38 38 H 1.08999 * 109.45745 * 181.38823 * 5 4 2 39 39 H 0.97000 * 120.00006 * 335.15464 * 8 6 5 40 40 H 1.08002 * 120.20214 * 0.02628 * 12 11 9 41 41 H 1.08007 * 120.81597 * 180.02562 * 13 12 11 42 42 H 0.96699 * 113.99688 * 270.00357 * 17 16 15 43 43 H 1.08998 * 109.58722 * 174.42076 * 22 6 5 44 44 H 1.09002 * 109.58815 * 294.84885 * 22 6 5 45 45 H 0.97004 * 120.00493 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 6 3.9569 -1.6658 0.0634 7 1 5.0411 -1.7702 0.1038 8 7 3.3405 -2.9925 -0.0149 9 6 3.8951 -4.0328 0.6381 10 8 4.9071 -3.8705 1.2917 11 6 3.2728 -5.3717 0.5595 12 6 3.8580 -6.4420 1.2406 13 6 3.2817 -7.6831 1.1731 14 6 2.1202 -7.8360 0.4087 15 7 1.3153 -8.8890 0.1305 16 6 0.3349 -8.4989 -0.6447 17 8 -0.6490 -9.2991 -1.1125 18 7 0.4525 -7.1663 -0.9109 19 1 -0.1455 -6.6352 -1.4596 20 6 1.5813 -6.7125 -0.2541 21 7 2.1674 -5.5364 -0.1573 22 6 3.4651 -0.9471 1.3236 23 7 2.0225 -0.6997 1.1944 24 6 1.1537 -1.1135 2.1685 25 1 0.1360 -1.3681 1.9116 26 6 1.5808 -1.2060 3.4860 27 7 2.7039 -0.6277 3.8558 28 14 0.5618 -2.1509 4.7342 29 1 0.9961 -3.5708 4.7546 30 1 0.7524 -1.5557 6.0813 31 1 -0.8732 -2.0776 4.3591 32 1 -0.3633 0.5083 0.8931 33 1 -0.3633 0.5194 -0.8868 34 1 -0.3634 -1.0276 -0.0064 35 1 1.6029 -1.7253 -1.2914 36 1 1.7655 -0.1671 -2.1369 37 1 4.0062 0.1473 -1.0994 38 1 3.9377 -1.3448 -2.0669 39 1 2.5331 -3.1221 -0.5367 40 1 4.7571 -6.2912 1.8196 41 1 3.7171 -8.5243 1.6922 42 1 -0.4461 -9.7173 -1.9605 43 1 3.6518 -1.5719 2.1970 44 1 3.9904 0.0019 1.4316 45 1 3.0022 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:28 Heat of formation + Delta-G solvation = 15.437304 kcal Electronic energy + Delta-G solvation = -31102.574892 eV Core-core repulsion = 26928.168659 eV Total energy + Delta-G solvation = -4174.406233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.54803 -41.25643 -39.91004 -38.98951 -37.83168 -35.83865 -34.98819 -34.49403 -32.70616 -32.13231 -31.72864 -30.49568 -27.87461 -26.83202 -25.60997 -24.52622 -23.86911 -22.93758 -22.49850 -21.93311 -20.50705 -20.26401 -19.51166 -18.70874 -18.53100 -18.13343 -17.25394 -17.18424 -16.53571 -16.23257 -16.18328 -15.84794 -15.53415 -15.40212 -15.14824 -14.78827 -14.44943 -14.40625 -14.28717 -14.00078 -13.67306 -13.29299 -13.23160 -13.00945 -12.85753 -12.64229 -12.57129 -12.46786 -12.40676 -12.23908 -12.11847 -12.07663 -11.57603 -11.32070 -11.17339 -11.04100 -10.53943 -10.45651 -10.14610 -9.99754 -9.58639 -8.55840 -7.81295 -5.25578 -0.78421 0.02958 0.92794 1.19908 1.36892 1.40717 1.46206 1.82176 2.17874 2.42710 2.48887 2.74829 3.06436 3.33673 3.34715 3.65129 3.76041 3.82308 3.90516 4.04644 4.11607 4.20044 4.48046 4.50693 4.52149 4.65241 4.73915 4.82855 4.86530 4.89571 4.97374 5.05072 5.10096 5.12149 5.26887 5.31675 5.34261 5.55940 5.61753 5.64910 5.69254 5.74779 5.77581 6.29170 6.36974 6.45613 6.57158 6.71422 7.20221 7.25609 7.94526 8.44368 9.23590 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.003921 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.407703 B = 7138.785572 C = 7532.869148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.123 3.877 7 H 0.074 0.926 8 N -0.671 5.671 9 C 0.564 3.436 10 O -0.569 6.569 11 C 0.107 3.893 12 C -0.122 4.122 13 C -0.022 4.022 14 C 0.026 3.974 15 N -0.508 5.508 16 C 0.497 3.503 17 O -0.431 6.431 18 N -0.574 5.574 19 H 0.443 0.557 20 C 0.232 3.768 21 N -0.454 5.454 22 C 0.171 3.829 23 N -0.595 5.595 24 C -0.233 4.233 25 H 0.071 0.929 26 C -0.050 4.050 27 N -0.933 5.933 28 Si 0.943 3.057 29 H -0.300 1.300 30 H -0.296 1.296 31 H -0.266 1.266 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.442 0.558 43 H 0.050 0.950 44 H 0.002 0.998 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -13.908 -17.455 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.092 0.908 8 N -0.320 5.320 9 C 0.349 3.651 10 O -0.449 6.449 11 C -0.040 4.040 12 C -0.146 4.146 13 C -0.050 4.050 14 C -0.096 4.096 15 N -0.241 5.241 16 C 0.192 3.808 17 O -0.237 6.237 18 N -0.203 5.203 19 H 0.287 0.713 20 C -0.007 4.007 21 N -0.170 5.170 22 C 0.044 3.956 23 N -0.319 5.319 24 C -0.364 4.364 25 H 0.088 0.912 26 C -0.245 4.245 27 N -0.580 5.580 28 Si 0.773 3.227 29 H -0.228 1.228 30 H -0.223 1.223 31 H -0.191 1.191 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.248 0.752 40 H 0.181 0.819 41 H 0.198 0.802 42 H 0.307 0.693 43 H 0.069 0.931 44 H 0.020 0.980 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.479 -13.794 -16.573 21.842 hybrid contribution -0.671 -0.007 0.657 0.939 sum -4.150 -13.801 -15.916 21.471 Atomic orbital electron populations 1.21718 0.94932 1.01064 1.00813 1.20759 0.94004 0.93322 0.86949 0.96440 1.21959 0.94949 1.00784 0.98206 1.21668 0.97127 1.00076 0.95922 1.21648 0.96726 0.82005 0.97917 0.90822 1.45666 1.29389 1.07647 1.49317 1.17976 0.83647 0.84100 0.79414 1.90758 1.26492 1.84927 1.42696 1.20851 0.91819 0.94672 0.96693 1.21695 1.02055 0.91379 0.99447 1.20710 0.91252 0.98066 0.94934 1.19918 0.98190 0.90086 1.01366 1.70644 1.04970 1.28814 1.19673 1.20286 0.88245 0.79389 0.92899 1.84826 1.34276 1.59524 1.45120 1.42969 1.22811 1.10348 1.44161 0.71309 1.18636 0.91290 0.91379 0.99408 1.66079 1.08888 1.23301 1.18762 1.20893 0.84031 0.95558 0.95163 1.44251 1.02351 1.65435 1.19859 1.19340 0.94883 1.35616 0.86555 0.91183 1.25618 0.98829 1.01358 0.98683 1.70130 1.24905 1.46594 1.16359 0.85619 0.79399 0.78208 0.79459 1.22757 1.22264 1.19076 0.94637 0.90545 0.93442 0.92460 0.89090 0.90343 0.89710 0.75167 0.81889 0.80222 0.69329 0.93116 0.97965 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.94 71.98 0.57 -3.82 16 2 C 0.15 5.87 3.50 44.98 0.16 6.03 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -3.45 5.21 30.67 0.16 -3.29 16 5 C -0.11 -3.19 5.58 30.62 0.17 -3.02 16 6 C 0.12 4.70 2.81 45.07 0.13 4.82 16 7 H 0.07 2.88 7.58 -2.39 -0.02 2.86 16 8 N -0.67 -24.96 4.90 -445.05 -2.18 -27.14 16 9 C 0.56 22.50 7.76 86.79 0.67 23.17 16 10 O -0.57 -26.06 15.95 -3.92 -0.06 -26.12 16 11 C 0.11 3.64 6.74 41.91 0.28 3.93 16 12 C -0.12 -3.55 9.55 22.34 0.21 -3.34 16 13 C -0.02 -0.55 10.16 22.38 0.23 -0.32 16 14 C 0.03 0.69 7.24 39.70 0.29 0.98 16 15 N -0.51 -12.25 11.30 -306.03 -3.46 -15.71 16 16 C 0.50 8.92 9.39 179.70 1.69 10.61 16 17 O -0.43 -4.30 13.62 -84.61 -1.15 -5.45 16 18 N -0.57 -10.60 6.25 -307.02 -1.92 -12.52 16 19 H 0.44 5.46 8.96 -92.71 -0.83 4.62 16 20 C 0.23 6.24 8.46 134.00 1.13 7.37 16 21 N -0.45 -14.17 9.54 -181.67 -1.73 -15.90 16 22 C 0.17 8.40 4.89 86.36 0.42 8.82 16 23 N -0.60 -28.70 2.91 -675.24 -1.96 -30.67 16 24 C -0.23 -12.60 8.60 84.03 0.72 -11.88 16 25 H 0.07 3.69 6.21 -2.91 -0.02 3.67 16 26 C -0.05 -2.87 4.96 84.86 0.42 -2.45 16 27 N -0.93 -57.53 11.14 21.65 0.24 -57.29 16 28 Si 0.94 47.44 29.58 68.60 2.03 49.47 16 29 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 30 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 31 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 32 H 0.03 1.38 7.62 -2.39 -0.02 1.36 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.65 7.44 -2.39 -0.02 1.63 16 35 H 0.06 1.67 6.40 -2.39 -0.02 1.65 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.41 14.10 6.08 -92.71 -0.56 13.54 16 40 H 0.16 4.51 7.61 -2.91 -0.02 4.49 16 41 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.44 -1.05 9.06 -74.06 -0.67 -1.72 16 43 H 0.05 3.00 6.06 -2.39 -0.01 2.99 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -79.38 367.53 -3.92 -83.31 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.98 Total: 20.42 kcal Atomic # 6 Polarization: 30.35 SS G_CDS: 7.26 Total: 37.61 kcal Atomic # 7 Polarization: -148.21 SS G_CDS: -11.01 Total: -159.23 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.22 Total: -31.57 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -79.38 -3.92 -83.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.744 kcal (2) G-P(sol) polarization free energy of solvation -79.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds