Wall clock time and date at job start Wed Apr 1 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58301 * 2 1 4 4 C 1.53191 * 109.58742 * 120.28420 * 2 1 3 5 5 C 1.53041 * 109.31030 * 174.56473 * 4 2 1 6 6 C 1.53036 * 109.53810 * 298.63571 * 5 4 2 7 7 H 1.09003 * 109.49612 * 301.41333 * 6 5 4 8 8 N 1.46499 * 109.49558 * 181.31971 * 6 5 4 9 9 C 1.34780 * 119.99981 * 154.99646 * 8 6 5 10 10 O 1.21678 * 120.00021 * 0.02562 * 9 8 6 11 11 C 1.46820 * 119.99740 * 179.97438 * 9 8 6 12 12 C 1.41291 * 126.50690 * 0.02914 * 11 9 8 13 13 N 1.30371 * 108.46678 * 179.97438 * 12 11 9 14 14 N 1.39981 * 109.30619 * 0.02562 * 13 12 11 15 15 C 1.35986 * 108.17009 * 359.72699 * 14 13 12 16 16 N 1.37177 * 120.55243 * 179.60623 * 15 14 13 17 17 H 0.97004 * 119.88252 * 180.30539 * 16 15 14 18 18 C 1.36351 * 120.24078 * 0.60091 * 16 15 14 19 19 C 1.35243 * 119.83183 * 359.69962 * 18 16 15 20 20 C 1.34857 * 131.92307 * 179.97438 * 14 13 12 21 21 O 1.21821 * 120.11500 * 0.02562 * 20 14 13 22 22 C 1.53189 * 109.31775 * 61.36582 * 6 5 4 23 23 N 1.46929 * 109.58320 * 239.71684 * 2 1 3 24 24 C 1.36935 * 120.63641 * 6.46860 * 23 2 1 25 25 H 1.08002 * 119.99660 * 330.33687 * 24 23 2 26 26 C 1.38810 * 120.00726 * 150.33393 * 24 23 2 27 27 N 1.31624 * 119.99291 * 344.65073 * 26 24 23 28 28 Si 1.86796 * 120.00435 * 164.64705 * 26 24 23 29 29 H 1.48503 * 109.46912 * 90.00333 * 28 26 24 30 30 H 1.48493 * 109.47167 * 209.99924 * 28 26 24 31 31 H 1.48504 * 109.47069 * 330.00392 * 28 26 24 32 32 H 1.09000 * 109.47403 * 299.99954 * 1 2 3 33 33 H 1.09007 * 109.47512 * 60.00169 * 1 2 3 34 34 H 1.09007 * 109.47284 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.49312 * 294.51745 * 4 2 1 36 36 H 1.09000 * 109.49858 * 54.61344 * 4 2 1 37 37 H 1.08998 * 109.45645 * 58.65726 * 5 4 2 38 38 H 1.09000 * 109.45562 * 178.60987 * 5 4 2 39 39 H 0.96994 * 120.00237 * 334.99399 * 8 6 5 40 40 H 1.08000 * 125.76820 * 359.97438 * 12 11 9 41 41 H 1.07996 * 120.08634 * 179.68645 * 18 16 15 42 42 H 1.07995 * 120.15287 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.58424 * 65.15156 * 22 6 5 44 44 H 1.08999 * 109.59101 * 185.43569 * 22 6 5 45 45 H 0.97004 * 119.99680 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1728 6 6 3.9603 -1.6607 -0.0600 7 1 3.5037 -2.6488 -0.0019 8 7 5.4180 -1.7974 -0.1122 9 6 5.9743 -2.8394 -0.7613 10 8 5.2659 -3.6664 -1.3043 11 6 7.4352 -2.9760 -0.8141 12 6 8.3826 -2.1018 -0.2359 13 7 9.5766 -2.5560 -0.4963 14 7 9.4705 -3.7325 -1.2473 15 6 8.1502 -3.9957 -1.4390 16 7 7.7555 -5.0962 -2.1566 17 1 6.8111 -5.2721 -2.2911 18 6 8.6857 -5.9469 -2.6762 19 6 10.0021 -5.7007 -2.4882 20 6 10.4025 -4.5646 -1.7549 21 8 11.5862 -4.3355 -1.5808 22 6 3.4685 -0.9436 -1.3211 23 7 2.0225 -0.6981 -1.1954 24 6 1.1534 -1.1128 -2.1689 25 1 0.1394 -1.3794 -1.9096 26 6 1.5754 -1.1907 -3.4890 27 7 2.6877 -0.5930 -3.8605 28 14 0.5650 -2.1436 -4.7381 29 1 -0.4265 -1.2357 -5.3689 30 1 1.4635 -2.6976 -5.7825 31 1 -0.1454 -3.2550 -4.0558 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.7638 -0.1654 2.1371 36 1 1.6050 -1.7246 1.2921 37 1 4.0044 0.1529 1.1021 38 1 3.9381 -1.3390 2.0702 39 1 5.9828 -1.1380 0.3202 40 1 8.1561 -1.2081 0.3267 41 1 8.3720 -6.8153 -3.2364 42 1 10.7433 -6.3713 -2.8971 43 1 3.9920 0.0064 -1.4289 44 1 3.6598 -1.5672 -2.1944 45 1 2.9825 -0.6470 -4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071875413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:41 Heat of formation + Delta-G solvation = 30.941684 kcal Electronic energy + Delta-G solvation = -30509.294146 eV Core-core repulsion = 26335.560233 eV Total energy + Delta-G solvation = -4173.733913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.87974 -40.88181 -39.96765 -39.14138 -38.97044 -35.93026 -34.60754 -34.13427 -32.58701 -32.26754 -31.68956 -30.50261 -27.72770 -26.81170 -25.57381 -25.07723 -23.96414 -23.58668 -22.20287 -21.49786 -20.92578 -20.07219 -19.21093 -18.57021 -18.26983 -18.01400 -17.89293 -17.23733 -16.87639 -16.59291 -15.90770 -15.64923 -15.39819 -15.04044 -14.99974 -14.93659 -14.75423 -14.49911 -14.40812 -14.28249 -14.22955 -14.02248 -13.43486 -13.02964 -12.73117 -12.65932 -12.50454 -12.38836 -12.23083 -12.08170 -11.93194 -11.78097 -11.59713 -11.34646 -11.24694 -11.08291 -10.89707 -10.75902 -10.49370 -10.02841 -9.19664 -8.55437 -7.80736 -5.26443 -0.29277 -0.17743 0.70776 0.96370 1.44886 1.45436 1.46997 1.55514 2.08584 2.20550 2.39838 2.54722 3.01552 3.34004 3.37124 3.63518 3.70155 3.75053 3.89642 4.03957 4.16661 4.20348 4.34145 4.41540 4.46355 4.53499 4.69864 4.77034 4.87486 4.94531 4.98975 5.05358 5.14452 5.19687 5.25308 5.37411 5.40742 5.53537 5.58896 5.64079 5.67081 5.74934 5.75559 5.83996 5.87990 6.46018 6.58021 6.69162 7.20798 7.34463 7.95104 8.45195 9.24425 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.003132 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.273865 B = 8938.190383 C =10401.421736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.136 3.864 7 H 0.058 0.942 8 N -0.700 5.700 9 C 0.597 3.403 10 O -0.589 6.589 11 C -0.320 4.320 12 C 0.148 3.852 13 N -0.309 5.309 14 N -0.367 5.367 15 C 0.368 3.632 16 N -0.580 5.580 17 H 0.453 0.547 18 C 0.223 3.777 19 C -0.321 4.321 20 C 0.545 3.455 21 O -0.547 6.547 22 C 0.179 3.821 23 N -0.603 5.603 24 C -0.249 4.249 25 H 0.072 0.928 26 C -0.051 4.051 27 N -0.933 5.933 28 Si 0.955 3.045 29 H -0.284 1.284 30 H -0.298 1.298 31 H -0.271 1.271 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.413 0.587 40 H 0.246 0.754 41 H 0.256 0.744 42 H 0.207 0.793 43 H -0.003 1.003 44 H 0.044 0.956 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -8.865 8.833 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.030 3.970 7 H 0.076 0.924 8 N -0.350 5.350 9 C 0.385 3.615 10 O -0.471 6.471 11 C -0.338 4.338 12 C -0.042 4.042 13 N -0.125 5.125 14 N -0.167 5.167 15 C 0.142 3.858 16 N -0.197 5.197 17 H 0.297 0.703 18 C 0.095 3.905 19 C -0.349 4.349 20 C 0.347 3.653 21 O -0.423 6.423 22 C 0.052 3.948 23 N -0.327 5.327 24 C -0.379 4.379 25 H 0.090 0.910 26 C -0.246 4.246 27 N -0.580 5.580 28 Si 0.784 3.216 29 H -0.211 1.211 30 H -0.225 1.225 31 H -0.196 1.196 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.250 0.750 40 H 0.262 0.738 41 H 0.272 0.728 42 H 0.224 0.776 43 H 0.015 0.985 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.572 -9.164 8.524 15.756 hybrid contribution -1.156 0.030 -1.233 1.690 sum 8.416 -9.133 7.291 14.402 Atomic orbital electron populations 1.21741 0.95004 1.01119 1.00894 1.20800 0.94122 0.93394 0.86959 0.96269 1.21940 0.94806 1.00862 0.98097 1.21663 0.96852 1.00135 0.96076 1.21493 0.78726 0.99387 0.97373 0.92379 1.45537 1.07665 1.26537 1.55232 1.17040 0.85542 0.81331 0.77577 1.90743 1.63952 1.44301 1.48116 1.19478 0.93904 1.01447 1.18952 1.24874 0.86957 0.98500 0.93868 1.77526 1.23068 0.96646 1.15287 1.48230 1.05254 1.21284 1.41949 1.19013 0.85157 0.89461 0.92167 1.41540 1.13557 1.19094 1.45507 0.70280 1.23433 0.87375 0.92129 0.87564 1.21924 0.98181 1.01289 1.13469 1.18196 0.84669 0.83031 0.79390 1.90871 1.17544 1.74385 1.59534 1.20826 0.83473 0.95355 0.95102 1.44371 1.02626 1.65679 1.20065 1.19439 0.95435 1.36392 0.86658 0.90999 1.25755 0.99017 1.00961 0.98842 1.70171 1.25735 1.45861 1.16193 0.85458 0.77975 0.79044 0.79136 1.21107 1.22479 1.19557 0.90472 0.94507 0.93474 0.88872 0.92796 0.90817 0.89437 0.75047 0.73779 0.72831 0.77597 0.98522 0.93744 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.95 71.98 0.57 -3.92 16 2 C 0.15 5.76 3.49 44.97 0.16 5.92 16 3 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -3.38 5.37 30.67 0.16 -3.21 16 5 C -0.11 -2.88 5.35 30.62 0.16 -2.72 16 6 C 0.14 4.76 2.61 45.07 0.12 4.88 16 7 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 8 N -0.70 -19.78 5.07 -446.00 -2.26 -22.04 16 9 C 0.60 18.77 7.76 86.49 0.67 19.44 16 10 O -0.59 -22.76 15.47 -4.28 -0.07 -22.82 16 11 C -0.32 -8.43 6.15 -20.02 -0.12 -8.55 16 12 C 0.15 3.32 11.47 85.66 0.98 4.30 16 13 N -0.31 -9.03 12.54 -56.31 -0.71 -9.73 16 14 N -0.37 -10.53 3.79 -315.75 -1.20 -11.73 16 15 C 0.37 9.25 7.78 132.62 1.03 10.29 16 16 N -0.58 -9.84 5.39 -191.03 -1.03 -10.86 16 17 H 0.45 7.47 7.78 -92.71 -0.72 6.75 16 18 C 0.22 1.94 11.25 83.30 0.94 2.88 16 19 C -0.32 -4.85 9.95 22.26 0.22 -4.62 16 20 C 0.54 15.21 7.70 84.91 0.65 15.87 16 21 O -0.55 -19.75 17.90 -4.74 -0.08 -19.83 16 22 C 0.18 8.40 4.87 86.31 0.42 8.82 16 23 N -0.60 -29.08 3.00 -674.51 -2.02 -31.10 16 24 C -0.25 -13.39 8.58 84.03 0.72 -12.66 16 25 H 0.07 3.74 6.23 -2.91 -0.02 3.73 16 26 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 27 N -0.93 -55.80 11.23 21.65 0.24 -55.56 16 28 Si 0.95 45.40 29.58 68.60 2.03 47.43 16 29 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 30 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 31 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.42 7.65 -2.38 -0.02 1.40 16 34 H 0.05 1.66 7.42 -2.38 -0.02 1.65 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 8.21 7.54 -92.71 -0.70 7.51 16 40 H 0.25 2.96 7.48 -2.91 -0.02 2.94 16 41 H 0.26 -1.10 8.06 -2.91 -0.02 -1.13 16 42 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.04 2.51 6.16 -2.39 -0.01 2.50 16 45 H 0.24 14.33 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -88.58 369.78 1.66 -86.92 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.36 Total: 15.05 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 7.11 Total: 34.28 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -6.97 Total: -141.03 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.15 Total: -42.65 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -88.58 1.66 -86.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071875413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.861 kcal (2) G-P(sol) polarization free energy of solvation -88.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds