Wall clock time and date at job start Wed Apr 1 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.59111 * 2 1 4 4 C 1.53196 * 109.58678 * 239.56806 * 2 1 3 5 5 C 1.53037 * 109.31148 * 185.57840 * 4 2 1 6 6 C 1.53040 * 109.53649 * 61.37078 * 5 4 2 7 7 H 1.08995 * 109.52529 * 58.60032 * 6 5 4 8 8 N 1.46507 * 109.49778 * 178.67986 * 6 5 4 9 9 C 1.34768 * 120.00175 * 204.83595 * 8 6 5 10 10 O 1.21648 * 119.99954 * 0.02562 * 9 8 6 11 11 C 1.47197 * 120.00242 * 179.97438 * 9 8 6 12 12 C 1.38847 * 120.90107 * 0.02562 * 11 9 8 13 13 C 1.39935 * 119.42956 * 179.72906 * 12 11 9 14 14 C 1.35012 * 121.27275 * 0.27250 * 13 12 11 15 15 N 1.36260 * 121.58307 * 359.96200 * 14 13 12 16 16 C 1.36370 * 133.88250 * 179.97438 * 15 14 13 17 17 O 1.35713 * 126.32906 * 0.02562 * 16 15 14 18 18 N 1.31099 * 107.33049 * 180.02562 * 16 15 14 19 19 N 1.28692 * 110.31544 * 359.97438 * 18 16 15 20 20 C 1.31482 * 109.66758 * 0.02562 * 19 18 16 21 21 C 1.53192 * 109.31124 * 298.62886 * 6 5 4 22 22 N 1.46922 * 108.77387 * 54.63922 * 21 6 5 23 23 C 1.36939 * 120.63086 * 126.41306 * 22 21 6 24 24 H 1.08003 * 119.99688 * 209.01084 * 23 22 21 25 25 C 1.38811 * 120.00256 * 29.01450 * 23 22 21 26 26 N 1.31619 * 119.99948 * 15.01088 * 25 23 22 27 27 Si 1.86798 * 120.00031 * 195.01366 * 25 23 22 28 28 H 1.48501 * 109.46941 * 89.99810 * 27 25 23 29 29 H 1.48502 * 109.46921 * 209.99754 * 27 25 23 30 30 H 1.48496 * 109.47339 * 330.00295 * 27 25 23 31 31 H 1.08999 * 109.46945 * 299.71784 * 1 2 3 32 32 H 1.09004 * 109.46928 * 59.71243 * 1 2 3 33 33 H 1.08997 * 109.47324 * 179.71806 * 1 2 3 34 34 H 1.08994 * 109.49619 * 305.53565 * 4 2 1 35 35 H 1.09002 * 109.49153 * 65.63450 * 4 2 1 36 36 H 1.09000 * 109.46449 * 301.34924 * 5 4 2 37 37 H 1.09003 * 109.46004 * 181.38747 * 5 4 2 38 38 H 0.97001 * 119.99507 * 24.83733 * 8 6 5 39 39 H 1.07995 * 120.28732 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.36457 * 180.25625 * 13 12 11 41 41 H 1.08004 * 119.20905 * 179.97438 * 14 13 12 42 42 H 0.96693 * 114.00050 * 90.00088 * 17 16 15 43 43 H 1.09005 * 109.58107 * 174.42241 * 21 6 5 44 44 H 1.08993 * 109.58780 * 294.84968 * 21 6 5 45 45 H 0.96997 * 120.00201 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6658 0.0657 7 1 3.4986 -2.6531 0.0090 8 7 5.4142 -1.8054 0.1199 9 6 5.9676 -2.8456 0.7741 10 8 5.2570 -3.6688 1.3193 11 6 7.4318 -2.9862 0.8282 12 6 8.2605 -2.0579 0.2122 13 6 9.6486 -2.2185 0.2877 14 6 10.1987 -3.2624 0.9439 15 7 9.4296 -4.2029 1.5607 16 6 9.7072 -5.3307 2.2754 17 8 10.9412 -5.8177 2.5617 18 7 8.5616 -5.8572 2.6348 19 7 7.5847 -5.1421 2.1983 20 6 8.0545 -4.1116 1.5304 21 6 3.4650 -0.9453 1.3250 22 7 2.0225 -0.6981 1.1954 23 6 1.1537 -1.1099 2.1704 24 1 0.1359 -1.3647 1.9142 25 6 1.5810 -1.1999 3.4881 26 7 2.7043 -0.6214 3.8565 27 14 0.5619 -2.1421 4.7382 28 1 0.9957 -3.5622 4.7612 29 1 0.7529 -1.5443 6.0841 30 1 -0.8731 -2.0691 4.3632 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6029 -1.7270 -1.2891 35 1 1.7661 -0.1695 -2.1366 36 1 4.0062 0.1458 -1.0994 37 1 3.9378 -1.3476 -2.0651 38 1 5.9807 -1.1491 -0.3151 39 1 7.8376 -1.2166 -0.3166 40 1 10.2923 -1.4936 -0.1882 41 1 11.2742 -3.3540 0.9810 42 1 11.3137 -5.4834 3.3890 43 1 3.6517 -1.5691 2.1992 44 1 3.9903 0.0037 1.4317 45 1 3.0032 -0.6845 4.7772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071988515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:53 Heat of formation + Delta-G solvation = 75.210554 kcal Electronic energy + Delta-G solvation = -30490.734733 eV Core-core repulsion = 26318.920462 eV Total energy + Delta-G solvation = -4171.814271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.70187 -39.69836 -38.33096 -37.95453 -37.49160 -34.48060 -33.90780 -32.77587 -31.46359 -30.66014 -29.82486 -29.04103 -26.19976 -25.30036 -24.68610 -23.65344 -23.04519 -22.24817 -21.17752 -20.33807 -19.58858 -19.08498 -18.30534 -17.54545 -17.31195 -16.71992 -16.33461 -15.76965 -15.36570 -15.18158 -15.00012 -14.31286 -14.14973 -13.76652 -13.72980 -13.35203 -13.20472 -12.98481 -12.84058 -12.73425 -12.55788 -12.32774 -11.90434 -11.85033 -11.48291 -11.20746 -11.09002 -10.83440 -10.66158 -10.58289 -10.50685 -10.37089 -10.22957 -9.92279 -9.85287 -9.77716 -9.44514 -9.43573 -8.59707 -8.36885 -8.35091 -6.58024 -5.69339 -3.13865 -0.07435 0.70667 1.55864 2.29317 2.61973 3.23209 3.35625 3.49000 3.54963 3.58004 3.58900 3.72984 3.97149 4.27170 4.40342 4.58240 4.66638 5.04052 5.14049 5.34425 5.38154 5.38868 5.46546 5.53181 5.55090 5.59937 5.68630 5.77588 5.97972 6.09976 6.20009 6.27776 6.31681 6.40634 6.46952 6.50058 6.63857 6.74053 6.89846 6.90701 7.06537 7.14780 7.33839 7.78086 7.82236 7.92202 8.32333 8.52856 8.57231 9.29288 9.93521 10.47774 11.38691 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.003218 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.937104 B = 8698.805308 C =10233.660975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.118 3.882 7 H 0.085 0.915 8 N -0.713 5.713 9 C 0.552 3.448 10 O -0.489 6.489 11 C -0.068 4.068 12 C -0.053 4.053 13 C -0.141 4.141 14 C 0.083 3.917 15 N -0.407 5.407 16 C 0.310 3.690 17 O -0.428 6.428 18 N -0.238 5.238 19 N -0.232 5.232 20 C 0.232 3.768 21 C 0.167 3.833 22 N -0.583 5.583 23 C -0.254 4.254 24 H 0.071 0.929 25 C 0.008 3.992 26 N -0.901 5.901 27 Si 0.900 3.100 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.389 0.611 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.404 0.596 43 H 0.097 0.903 44 H 0.017 0.983 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.710 1.498 -11.226 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.103 0.897 8 N -0.365 5.365 9 C 0.336 3.664 10 O -0.363 6.363 11 C -0.075 4.075 12 C -0.078 4.078 13 C -0.162 4.162 14 C -0.039 4.039 15 N -0.100 5.100 16 C 0.011 3.989 17 O -0.227 6.227 18 N -0.088 5.088 19 N -0.078 5.078 20 C -0.020 4.020 21 C 0.040 3.960 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.088 0.912 25 C -0.191 4.191 26 N -0.545 5.545 27 Si 0.729 3.271 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.223 0.777 39 H 0.173 0.827 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.035 0.965 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.312 -0.620 -10.365 20.187 hybrid contribution 1.332 1.006 0.410 1.718 sum 18.644 0.386 -9.955 21.139 Atomic orbital electron populations 1.21806 0.96008 1.01421 1.00199 1.20490 0.93092 0.93522 0.87057 0.95763 1.22049 0.94220 1.01417 0.98926 1.21681 0.97523 0.99563 0.96624 1.22077 0.76943 1.01247 0.98446 0.89661 1.45927 1.08899 1.26356 1.55279 1.17402 0.85658 0.82813 0.80575 1.90972 1.61849 1.40994 1.42450 1.20420 0.95036 0.92353 0.99714 1.21822 0.92954 0.97373 0.95620 1.20780 0.95618 0.98364 1.01474 1.21700 0.97718 0.88885 0.95623 1.44079 1.09376 1.18887 1.37697 1.21808 0.89004 0.86738 1.01394 1.85004 1.24824 1.66549 1.46336 1.74763 0.93888 1.22279 1.17894 1.75109 1.19307 1.01482 1.11853 1.22644 0.78655 0.98498 1.02168 1.21109 0.83575 0.96879 0.94439 1.44023 1.02632 1.64775 1.19188 1.19146 0.94706 1.38371 0.86080 0.91161 1.25054 0.97700 0.99320 0.97039 1.69979 1.23313 1.44280 1.16904 0.86336 0.79670 0.80266 0.80778 1.21133 1.21869 1.20462 0.91979 0.94380 0.92776 0.91978 0.92656 0.92257 0.93015 0.77675 0.82683 0.81989 0.81165 0.73904 0.88505 0.96510 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.25 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.22 2.60 -67.81 -0.18 2.04 16 7 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.71 -10.96 5.04 -54.83 -0.28 -11.24 16 9 C 0.55 9.88 7.74 -12.63 -0.10 9.79 16 10 O -0.49 -11.53 15.94 5.24 0.08 -11.44 16 11 C -0.07 -0.95 6.06 -102.69 -0.62 -1.58 16 12 C -0.05 -0.44 9.63 -38.72 -0.37 -0.81 16 13 C -0.14 -0.80 9.91 -40.09 -0.40 -1.19 16 14 C 0.08 0.58 10.94 -16.73 -0.18 0.40 16 15 N -0.41 -4.86 2.97 -62.51 -0.19 -5.05 16 16 C 0.31 4.01 9.41 -88.65 -0.83 3.18 16 17 O -0.43 -3.73 13.65 -18.84 -0.26 -3.99 16 18 N -0.24 -4.13 12.20 29.70 0.36 -3.77 16 19 N -0.23 -4.54 11.76 32.37 0.38 -4.16 16 20 C 0.23 3.73 7.75 -153.91 -1.19 2.54 16 21 C 0.17 3.98 4.86 -3.71 -0.02 3.96 16 22 N -0.58 -14.39 2.99 -164.77 -0.49 -14.88 16 23 C -0.25 -6.97 8.60 -15.06 -0.13 -7.10 16 24 H 0.07 1.89 6.21 -52.48 -0.33 1.56 16 25 C 0.01 0.22 4.96 -17.43 -0.09 0.14 16 26 N -0.90 -26.89 11.14 55.49 0.62 -26.27 16 27 Si 0.90 22.87 29.58 -169.99 -5.03 17.85 16 28 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 4.22 6.70 -40.82 -0.27 3.95 16 39 H 0.16 0.79 6.48 -52.49 -0.34 0.45 16 40 H 0.16 0.25 8.06 -52.49 -0.42 -0.18 16 41 H 0.17 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.40 1.28 9.06 45.56 0.41 1.69 16 43 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -39.37 369.77 -8.52 -47.89 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.96 Total: 1.42 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -4.34 Total: 8.06 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.41 Total: -65.36 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.17 Total: -15.43 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.37 -8.52 -47.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071988515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.104 kcal (2) G-P(sol) polarization free energy of solvation -39.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds