Wall clock time and date at job start Wed Apr 1 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.59111 * 2 1 4 4 C 1.53196 * 109.58678 * 239.56806 * 2 1 3 5 5 C 1.53037 * 109.31148 * 185.57840 * 4 2 1 6 6 C 1.53040 * 109.53649 * 61.37078 * 5 4 2 7 7 H 1.08995 * 109.52529 * 58.60032 * 6 5 4 8 8 N 1.46507 * 109.49778 * 178.67986 * 6 5 4 9 9 C 1.34768 * 120.00175 * 204.83595 * 8 6 5 10 10 O 1.21648 * 119.99954 * 0.02562 * 9 8 6 11 11 C 1.47197 * 120.00242 * 179.97438 * 9 8 6 12 12 C 1.38847 * 120.90107 * 0.02562 * 11 9 8 13 13 C 1.39935 * 119.42956 * 179.72906 * 12 11 9 14 14 C 1.35012 * 121.27275 * 0.27250 * 13 12 11 15 15 N 1.36260 * 121.58307 * 359.96200 * 14 13 12 16 16 C 1.36370 * 133.88250 * 179.97438 * 15 14 13 17 17 O 1.35713 * 126.32906 * 0.02562 * 16 15 14 18 18 N 1.31099 * 107.33049 * 180.02562 * 16 15 14 19 19 N 1.28692 * 110.31544 * 359.97438 * 18 16 15 20 20 C 1.31482 * 109.66758 * 0.02562 * 19 18 16 21 21 C 1.53192 * 109.31124 * 298.62886 * 6 5 4 22 22 N 1.46922 * 108.77387 * 54.63922 * 21 6 5 23 23 C 1.36939 * 120.63086 * 126.41306 * 22 21 6 24 24 H 1.08003 * 119.99688 * 209.01084 * 23 22 21 25 25 C 1.38811 * 120.00256 * 29.01450 * 23 22 21 26 26 N 1.31619 * 119.99948 * 15.01088 * 25 23 22 27 27 Si 1.86798 * 120.00031 * 195.01366 * 25 23 22 28 28 H 1.48501 * 109.46941 * 89.99810 * 27 25 23 29 29 H 1.48502 * 109.46921 * 209.99754 * 27 25 23 30 30 H 1.48496 * 109.47339 * 330.00295 * 27 25 23 31 31 H 1.08999 * 109.46945 * 299.71784 * 1 2 3 32 32 H 1.09004 * 109.46928 * 59.71243 * 1 2 3 33 33 H 1.08997 * 109.47324 * 179.71806 * 1 2 3 34 34 H 1.08994 * 109.49619 * 305.53565 * 4 2 1 35 35 H 1.09002 * 109.49153 * 65.63450 * 4 2 1 36 36 H 1.09000 * 109.46449 * 301.34924 * 5 4 2 37 37 H 1.09003 * 109.46004 * 181.38747 * 5 4 2 38 38 H 0.97001 * 119.99507 * 24.83733 * 8 6 5 39 39 H 1.07995 * 120.28732 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.36457 * 180.25625 * 13 12 11 41 41 H 1.08004 * 119.20905 * 179.97438 * 14 13 12 42 42 H 0.96693 * 114.00050 * 90.00088 * 17 16 15 43 43 H 1.09005 * 109.58107 * 174.42241 * 21 6 5 44 44 H 1.08993 * 109.58780 * 294.84968 * 21 6 5 45 45 H 0.96997 * 120.00201 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6658 0.0657 7 1 3.4986 -2.6531 0.0090 8 7 5.4142 -1.8054 0.1199 9 6 5.9676 -2.8456 0.7741 10 8 5.2570 -3.6688 1.3193 11 6 7.4318 -2.9862 0.8282 12 6 8.2605 -2.0579 0.2122 13 6 9.6486 -2.2185 0.2877 14 6 10.1987 -3.2624 0.9439 15 7 9.4296 -4.2029 1.5607 16 6 9.7072 -5.3307 2.2754 17 8 10.9412 -5.8177 2.5617 18 7 8.5616 -5.8572 2.6348 19 7 7.5847 -5.1421 2.1983 20 6 8.0545 -4.1116 1.5304 21 6 3.4650 -0.9453 1.3250 22 7 2.0225 -0.6981 1.1954 23 6 1.1537 -1.1099 2.1704 24 1 0.1359 -1.3647 1.9142 25 6 1.5810 -1.1999 3.4881 26 7 2.7043 -0.6214 3.8565 27 14 0.5619 -2.1421 4.7382 28 1 0.9957 -3.5622 4.7612 29 1 0.7529 -1.5443 6.0841 30 1 -0.8731 -2.0691 4.3632 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6029 -1.7270 -1.2891 35 1 1.7661 -0.1695 -2.1366 36 1 4.0062 0.1458 -1.0994 37 1 3.9378 -1.3476 -2.0651 38 1 5.9807 -1.1491 -0.3151 39 1 7.8376 -1.2166 -0.3166 40 1 10.2923 -1.4936 -0.1882 41 1 11.2742 -3.3540 0.9810 42 1 11.3137 -5.4834 3.3890 43 1 3.6517 -1.5691 2.1992 44 1 3.9903 0.0037 1.4317 45 1 3.0032 -0.6845 4.7772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071988515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:52 Heat of formation + Delta-G solvation = 41.389027 kcal Electronic energy + Delta-G solvation = -30492.201344 eV Core-core repulsion = 26318.920462 eV Total energy + Delta-G solvation = -4173.280882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.66540 -41.03281 -39.41905 -38.87457 -38.75421 -36.03205 -34.93793 -34.56333 -32.46213 -31.97058 -31.66793 -30.06205 -27.76680 -26.91549 -25.86067 -24.56910 -24.17657 -23.84756 -22.40421 -21.75921 -21.04042 -20.20797 -19.24191 -18.48179 -18.36985 -18.24542 -17.73640 -17.07012 -16.63540 -16.31409 -16.04136 -15.83458 -15.60826 -15.41647 -15.11556 -14.95422 -14.46256 -14.09822 -14.04029 -13.74439 -13.70801 -13.49249 -13.24858 -13.05867 -12.90884 -12.74409 -12.72737 -12.55952 -12.25384 -12.15982 -12.06682 -11.94246 -11.63634 -11.56126 -11.38529 -11.11502 -10.92057 -10.75519 -10.53067 -10.10137 -9.26792 -8.60512 -7.84833 -5.29794 -0.86290 -0.10252 0.68390 1.37724 1.39448 1.45636 1.48753 1.60324 2.05855 2.45017 2.50181 2.52990 2.98429 3.14735 3.32557 3.54402 3.70278 3.73716 3.83125 4.01206 4.14330 4.28397 4.32177 4.43248 4.45177 4.65175 4.67833 4.73425 4.75218 4.85138 4.86088 4.93319 5.04283 5.11130 5.14229 5.22928 5.34354 5.38071 5.49527 5.57334 5.57924 5.65274 5.72373 5.84868 6.27953 6.42323 6.61996 7.17458 7.29830 7.32941 7.92978 8.39962 9.19525 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.003218 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.937104 B = 8698.805308 C =10233.660975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.154 3.846 3 H 0.028 0.972 4 C -0.120 4.120 5 C -0.105 4.105 6 C 0.133 3.867 7 H 0.045 0.955 8 N -0.695 5.695 9 C 0.550 3.450 10 O -0.568 6.568 11 C -0.138 4.138 12 C 0.007 3.993 13 C -0.134 4.134 14 C 0.092 3.908 15 N -0.405 5.405 16 C 0.329 3.671 17 O -0.419 6.419 18 N -0.293 5.293 19 N -0.316 5.316 20 C 0.223 3.777 21 C 0.178 3.822 22 N -0.604 5.604 23 C -0.247 4.247 24 H 0.074 0.926 25 C -0.052 4.052 26 N -0.932 5.932 27 Si 0.949 3.051 28 H -0.303 1.303 29 H -0.293 1.293 30 H -0.259 1.259 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.415 0.585 39 H 0.196 0.804 40 H 0.226 0.774 41 H 0.222 0.778 42 H 0.430 0.570 43 H 0.038 0.962 44 H 0.005 0.995 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.078 4.397 -15.271 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 H 0.045 0.955 4 C -0.159 4.159 5 C -0.143 4.143 6 C 0.026 3.974 7 H 0.064 0.936 8 N -0.348 5.348 9 C 0.337 3.663 10 O -0.447 6.447 11 C -0.145 4.145 12 C -0.017 4.017 13 C -0.154 4.154 14 C -0.029 4.029 15 N -0.098 5.098 16 C 0.026 3.974 17 O -0.222 6.222 18 N -0.141 5.141 19 N -0.161 5.161 20 C -0.030 4.030 21 C 0.051 3.949 22 N -0.328 5.328 23 C -0.378 4.378 24 H 0.091 0.909 25 C -0.247 4.247 26 N -0.578 5.578 27 Si 0.779 3.221 28 H -0.231 1.231 29 H -0.219 1.219 30 H -0.183 1.183 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.254 0.746 39 H 0.213 0.787 40 H 0.242 0.758 41 H 0.239 0.761 42 H 0.292 0.708 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.705 2.325 -14.451 25.357 hybrid contribution 0.543 0.219 1.548 1.654 sum 21.248 2.544 -12.904 24.989 Atomic orbital electron populations 1.21749 0.95041 1.00978 1.01074 1.20827 0.94126 0.93595 0.86588 0.95468 1.21966 0.94872 1.00701 0.98349 1.21651 0.96887 1.00248 0.95498 1.21547 0.78738 0.99085 0.97998 0.93645 1.45590 1.07777 1.26535 1.54902 1.18088 0.87501 0.81886 0.78865 1.90927 1.64119 1.43847 1.45788 1.20026 0.93038 0.95513 1.05946 1.22515 0.93972 0.94956 0.90265 1.21537 0.94599 0.98745 1.00509 1.22918 0.99775 0.87200 0.92963 1.44201 1.08270 1.19434 1.37922 1.21713 0.89346 0.86318 0.99979 1.84986 1.22514 1.66542 1.48110 1.74528 0.95361 1.24061 1.20197 1.74936 1.21383 1.04290 1.15451 1.22875 0.80546 0.98129 1.01492 1.20785 0.83734 0.95439 0.94928 1.44326 1.02589 1.65764 1.20131 1.19471 0.95169 1.36424 0.86703 0.90851 1.25711 0.98987 1.01081 0.98926 1.70127 1.24954 1.46406 1.16344 0.85521 0.79604 0.77956 0.79048 1.23064 1.21946 1.18266 0.94401 0.90135 0.93876 0.93374 0.88287 0.89925 0.89274 0.74591 0.78691 0.75779 0.76135 0.70823 0.94392 0.97693 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.94 71.98 0.57 -4.13 16 2 C 0.15 5.99 3.50 44.97 0.16 6.15 16 3 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -3.58 5.37 30.67 0.16 -3.41 16 5 C -0.10 -2.85 5.35 30.62 0.16 -2.69 16 6 C 0.13 5.08 2.60 45.07 0.12 5.20 16 7 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 8 N -0.69 -21.27 5.04 -445.63 -2.24 -23.51 16 9 C 0.55 20.92 7.74 86.60 0.67 21.59 16 10 O -0.57 -29.92 15.94 -4.18 -0.07 -29.99 16 11 C -0.14 -3.87 6.06 -18.61 -0.11 -3.99 16 12 C 0.01 0.09 9.63 22.83 0.22 0.31 16 13 C -0.13 -0.60 9.91 21.94 0.22 -0.38 16 14 C 0.09 0.81 10.94 83.26 0.91 1.72 16 15 N -0.41 -9.09 2.97 -462.35 -1.37 -10.46 16 16 C 0.33 8.48 9.41 179.66 1.69 10.17 16 17 O -0.42 -6.48 13.65 -90.35 -1.23 -7.71 16 18 N -0.29 -11.04 12.20 -173.36 -2.11 -13.15 16 19 N -0.32 -13.71 11.76 -51.50 -0.61 -14.32 16 20 C 0.22 7.52 7.75 135.68 1.05 8.57 16 21 C 0.18 8.94 4.86 86.36 0.42 9.36 16 22 N -0.60 -30.78 2.99 -675.22 -2.02 -32.80 16 23 C -0.25 -14.18 8.60 84.03 0.72 -13.46 16 24 H 0.07 4.07 6.21 -2.91 -0.02 4.05 16 25 C -0.05 -3.14 4.96 84.86 0.42 -2.72 16 26 N -0.93 -59.33 11.14 21.65 0.24 -59.09 16 27 Si 0.95 49.69 29.58 68.60 2.03 51.72 16 28 H -0.30 -16.56 7.11 99.48 0.71 -15.86 16 29 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 30 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 31 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.04 1.61 7.45 -2.39 -0.02 1.60 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.42 7.74 6.70 -92.71 -0.62 7.12 16 39 H 0.20 0.68 6.48 -2.91 -0.02 0.66 16 40 H 0.23 -1.58 8.06 -2.91 -0.02 -1.60 16 41 H 0.22 -0.31 8.06 -2.91 -0.02 -0.34 16 42 H 0.43 1.65 9.06 -74.06 -0.67 0.98 16 43 H 0.04 2.36 6.06 -2.38 -0.01 2.34 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -105.09 369.77 -0.23 -105.32 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -0.23 Total: 1.72 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 7.39 Total: 32.28 kcal Atomic # 7 Polarization: -145.22 SS G_CDS: -8.12 Total: -153.33 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.30 Total: -37.70 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.03 Total: 51.72 kcal Total: -105.09 -0.23 -105.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071988515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.710 kcal (2) G-P(sol) polarization free energy of solvation -105.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds