Wall clock time and date at job start Wed Apr 1 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.67661 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.77624 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47496 * 180.02562 * 9 7 6 11 11 C 1.34250 * 126.49213 * 265.02018 * 10 9 7 12 12 N 1.36817 * 109.92836 * 180.02562 * 11 10 9 13 13 H 0.96998 * 125.06323 * 180.02562 * 12 11 10 14 14 C 1.37809 * 109.86687 * 0.02562 * 12 11 10 15 15 C 1.39095 * 133.39702 * 180.02562 * 14 12 11 16 16 C 1.37718 * 119.95061 * 179.97438 * 15 14 12 17 17 C 1.39031 * 120.65034 * 0.02562 * 16 15 14 18 18 F 1.35107 * 119.83286 * 179.97438 * 17 16 15 19 19 C 1.37793 * 120.33280 * 0.02562 * 17 16 15 20 20 C 1.39665 * 119.63064 * 359.65140 * 19 17 16 21 21 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 22 22 C 1.54905 * 101.53029 * 35.35966 * 21 4 2 23 23 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 24 24 C 1.36943 * 125.64628 * 298.52844 * 23 2 1 25 25 H 1.07999 * 119.99997 * 0.02562 * 24 23 2 26 26 C 1.38816 * 119.99832 * 180.02562 * 24 23 2 27 27 N 1.31616 * 120.00113 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 119.99740 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47390 * 90.00350 * 28 26 24 30 30 H 1.48508 * 109.46962 * 210.00051 * 28 26 24 31 31 H 1.48501 * 109.47448 * 329.99970 * 28 26 24 32 32 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 33 33 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 34 34 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 35 35 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 36 36 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 37 37 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 38 38 H 1.07993 * 125.03576 * 359.97438 * 11 10 9 39 39 H 1.07999 * 120.02416 * 359.97438 * 15 14 12 40 40 H 1.07998 * 119.67352 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.18095 * 179.97438 * 19 17 16 42 42 H 1.09001 * 110.95548 * 277.33125 * 21 4 2 43 43 H 1.08996 * 111.09853 * 153.45188 * 21 4 2 44 44 H 1.09002 * 110.36692 * 204.23391 * 22 21 4 45 45 H 1.08995 * 110.36664 * 82.02192 * 22 21 4 46 46 H 0.97000 * 120.00077 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4473 -1.6178 6 7 2.4541 0.1969 -2.2880 7 6 2.4583 -0.1895 -3.5791 8 8 2.1348 -1.3204 -3.8747 9 6 2.8662 0.7832 -4.6554 10 6 2.7847 0.1079 -6.0001 11 6 3.7922 -0.4905 -6.6554 12 7 3.3417 -0.9908 -7.8465 13 1 3.8867 -1.4659 -8.4930 14 6 1.9984 -0.7189 -7.9906 15 6 1.0689 -0.9958 -8.9876 16 6 -0.2375 -0.5846 -8.8432 17 6 -0.6410 0.1080 -7.7073 18 9 -1.9267 0.5041 -7.5829 19 6 0.2639 0.3935 -6.7082 20 6 1.5905 -0.0233 -6.8383 21 6 3.2918 -1.5137 -0.6899 22 6 2.8176 -1.8763 0.7395 23 7 2.0300 -0.7124 1.1849 24 6 1.8015 -0.3544 2.4868 25 1 1.2078 0.5197 2.7103 26 6 2.3331 -1.1149 3.5193 27 7 3.0570 -2.1799 3.2470 28 14 2.0209 -0.6269 5.2951 29 1 0.7821 -1.2871 5.7795 30 1 3.1694 -1.0528 6.1347 31 1 1.8632 0.8471 5.3831 32 1 -0.3634 0.5206 0.8861 33 1 -0.3634 0.5070 -0.8939 34 1 -0.3634 -1.0276 0.0079 35 1 2.7132 1.1012 -2.0515 36 1 2.1969 1.6435 -4.6402 37 1 3.8888 1.1153 -4.4765 38 1 4.8078 -0.5650 -6.2960 39 1 1.3715 -1.5329 -9.8744 40 1 -0.9553 -0.8017 -9.6203 41 1 -0.0521 0.9321 -5.8270 42 1 4.1690 -0.8674 -0.6584 43 1 3.4909 -2.4114 -1.2751 44 1 3.6742 -2.0285 1.3961 45 1 2.1942 -2.7700 0.7170 46 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088882075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:24 Heat of formation + Delta-G solvation = 2.015252 kcal Electronic energy + Delta-G solvation = -29487.654544 eV Core-core repulsion = 25292.746326 eV Total energy + Delta-G solvation = -4194.908219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.87391 -41.52428 -39.49151 -37.51227 -36.80344 -33.93016 -33.28332 -31.99007 -30.57686 -30.30180 -29.13694 -28.69434 -27.24288 -24.50494 -23.96527 -23.32067 -22.14139 -20.99295 -20.10956 -19.92149 -19.26728 -18.20552 -17.42926 -16.88097 -16.67212 -16.45926 -15.71482 -15.61946 -15.49928 -14.92059 -14.72140 -14.48769 -14.12357 -13.96527 -13.70386 -13.44374 -13.23294 -13.12014 -13.02740 -12.74325 -12.60107 -12.12010 -12.08778 -11.71267 -11.52524 -11.49272 -11.12454 -11.03177 -10.85347 -10.80974 -10.52176 -10.38038 -10.08892 -9.98164 -9.72460 -9.58989 -9.45217 -8.66314 -8.53343 -8.35801 -7.87781 -6.86438 -5.64877 -3.07619 0.76989 1.21605 2.36126 2.84099 2.91071 3.39748 3.42520 3.45558 3.46773 3.65576 4.11806 4.38090 4.49034 4.56652 4.68543 4.84512 4.99648 5.04347 5.13422 5.32480 5.38666 5.39885 5.43900 5.55107 5.57820 5.59951 5.65976 5.80482 5.86981 5.99619 6.06116 6.15524 6.28502 6.35048 6.38962 6.43044 6.48115 6.57964 6.64938 6.73946 6.85742 6.91181 7.16387 7.24322 7.53414 7.63421 7.82936 7.86406 8.35574 8.54030 9.21371 9.82396 10.46489 11.38410 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002208 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.564044 B =12675.901795 C =13537.436710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.092 0.908 6 N -0.719 5.719 7 C 0.509 3.491 8 O -0.533 6.533 9 C -0.068 4.068 10 C -0.148 4.148 11 C 0.073 3.927 12 N -0.592 5.592 13 H 0.417 0.583 14 C 0.086 3.914 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.069 3.931 18 F -0.144 7.144 19 C -0.102 4.102 20 C -0.063 4.063 21 C -0.152 4.152 22 C 0.152 3.848 23 N -0.595 5.595 24 C -0.219 4.219 25 H 0.077 0.923 26 C -0.011 4.011 27 N -0.921 5.921 28 Si 0.914 3.086 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.397 0.603 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.013 0.987 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 6.233 -25.499 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.370 5.370 7 C 0.295 3.705 8 O -0.410 6.410 9 C -0.108 4.108 10 C -0.156 4.156 11 C -0.054 4.054 12 N -0.195 5.195 13 H 0.254 0.746 14 C -0.021 4.021 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.049 3.951 18 F -0.122 7.122 19 C -0.121 4.121 20 C -0.068 4.068 21 C -0.192 4.192 22 C 0.027 3.973 23 N -0.321 5.321 24 C -0.347 4.347 25 H 0.095 0.905 26 C -0.207 4.207 27 N -0.570 5.570 28 Si 0.744 3.256 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.231 0.769 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.190 0.810 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.031 0.969 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.498 5.284 -25.541 26.125 hybrid contribution -0.106 0.375 0.853 0.938 sum 1.391 5.660 -24.687 25.366 Atomic orbital electron populations 1.22235 0.97943 1.01362 0.99906 1.21000 0.92547 0.94786 0.86985 0.94704 1.22127 0.97541 0.90876 0.86390 0.89040 1.46079 1.68742 1.15958 1.06183 1.20572 0.77881 0.88885 0.83205 1.90711 1.47341 1.20634 1.82271 1.19974 1.03901 0.97620 0.89320 1.19517 0.91602 1.08018 0.96443 1.21612 0.99463 0.98089 0.86197 1.41660 1.07653 1.51084 1.19084 0.74569 1.18210 0.84752 1.01923 0.97184 1.19784 0.91290 1.02973 0.98065 1.20713 0.96241 1.00783 0.97672 1.17279 0.79001 1.02262 0.96600 1.91484 1.35224 1.89274 1.96250 1.20405 0.91434 1.01606 0.98663 1.18685 0.92875 1.00908 0.94362 1.23396 0.96820 0.99245 0.99698 1.21937 0.97306 0.88398 0.89624 1.44493 1.59065 1.28422 1.00077 1.19027 1.26885 1.08273 0.80552 0.90466 1.24788 1.00393 0.97440 0.98040 1.69797 1.38986 1.18095 1.30108 0.86085 0.77243 0.77715 0.84514 1.21661 1.21697 1.20721 0.92757 0.94332 0.93015 0.76901 0.88267 0.88101 0.80998 0.85331 0.84592 0.84911 0.92068 0.92158 0.87390 0.96875 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.15 37.16 0.34 -2.58 16 2 C 0.15 3.10 3.48 -66.95 -0.23 2.87 16 3 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 4 C 0.14 2.46 2.84 -66.03 -0.19 2.27 16 5 H 0.09 1.84 7.26 -51.93 -0.38 1.46 16 6 N -0.72 -10.10 5.19 -51.97 -0.27 -10.37 16 7 C 0.51 7.18 7.82 -10.99 -0.09 7.10 16 8 O -0.53 -9.90 15.68 5.55 0.09 -9.81 16 9 C -0.07 -0.65 6.23 -29.04 -0.18 -0.83 16 10 C -0.15 -1.62 4.81 -102.71 -0.49 -2.11 16 11 C 0.07 0.64 11.73 -16.73 -0.20 0.44 16 12 N -0.59 -4.72 6.07 -10.64 -0.06 -4.78 16 13 H 0.42 1.90 8.96 -40.82 -0.37 1.53 16 14 C 0.09 0.89 7.27 -83.95 -0.61 0.28 16 15 C -0.10 -0.88 10.06 -39.45 -0.40 -1.28 16 16 C -0.13 -1.29 9.99 -39.48 -0.39 -1.68 16 17 C 0.07 0.81 7.29 -39.45 -0.29 0.52 16 18 F -0.14 -1.78 17.26 2.25 0.04 -1.75 16 19 C -0.10 -1.24 10.07 -39.21 -0.40 -1.63 16 20 C -0.06 -0.76 6.35 -105.14 -0.67 -1.43 16 21 C -0.15 -2.99 6.79 -24.52 -0.17 -3.16 16 22 C 0.15 3.72 5.88 -2.53 -0.01 3.70 16 23 N -0.60 -14.80 3.13 -162.58 -0.51 -15.31 16 24 C -0.22 -5.94 9.87 -15.06 -0.15 -6.09 16 25 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 26 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 27 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 28 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 32 H 0.05 1.05 8.02 -51.92 -0.42 0.63 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 4.49 8.37 -40.82 -0.34 4.15 16 36 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -34.41 384.98 -10.00 -44.40 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.40 Total: 5.11 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.21 Total: -4.04 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.28 Total: -56.56 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.41 -10.00 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088882075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.418 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds