Wall clock time and date at job start Wed Apr 1 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.29064 * 2 1 4 4 C 1.54010 * 110.32919 * 237.86393 * 2 1 3 5 5 N 1.47481 * 107.08448 * 242.31185 * 4 2 1 6 6 C 1.34777 * 127.03544 * 154.51515 * 5 4 2 7 7 O 1.21577 * 119.99882 * 186.00360 * 6 5 4 8 8 C 1.47677 * 119.99870 * 6.00605 * 6 5 4 9 9 C 1.39915 * 120.38906 * 196.04574 * 8 6 5 10 10 N 1.31449 * 121.13522 * 180.26764 * 9 8 6 11 11 C 1.32466 * 121.81188 * 359.78200 * 10 9 8 12 12 N 1.37885 * 133.44919 * 179.97438 * 11 10 9 13 13 H 0.96997 * 126.25059 * 0.04059 * 12 11 10 14 14 C 1.36516 * 107.49525 * 180.02562 * 12 11 10 15 15 O 1.35269 * 125.02286 * 179.97438 * 14 12 11 16 16 N 1.30712 * 109.95610 * 0.02562 * 14 12 11 17 17 C 1.35899 * 109.40171 * 359.97438 * 16 14 12 18 18 C 1.39411 * 133.63022 * 180.02562 * 17 16 14 19 19 C 1.48116 * 105.93176 * 334.77666 * 5 4 2 20 20 C 1.54594 * 103.42417 * 39.02649 * 19 5 4 21 21 H 1.09005 * 110.57614 * 81.16873 * 20 19 5 22 22 C 1.53002 * 110.99175 * 204.37607 * 20 19 5 23 23 N 1.46507 * 109.46917 * 288.64820 * 22 20 19 24 24 C 1.36938 * 119.99927 * 179.97438 * 23 22 20 25 25 H 1.08002 * 120.00142 * 0.02562 * 24 23 22 26 26 C 1.38812 * 119.99960 * 180.02562 * 24 23 22 27 27 N 1.31613 * 120.00019 * 180.02562 * 26 24 23 28 28 Si 1.86803 * 119.99864 * 0.02562 * 26 24 23 29 29 H 1.48496 * 109.47174 * 89.99958 * 28 26 24 30 30 H 1.48501 * 109.47304 * 210.00250 * 28 26 24 31 31 H 1.48507 * 109.47236 * 329.99879 * 28 26 24 32 32 H 1.08999 * 109.46797 * 180.68078 * 1 2 3 33 33 H 1.08999 * 109.47176 * 300.68145 * 1 2 3 34 34 H 1.08998 * 109.46972 * 60.68559 * 1 2 3 35 35 H 1.08997 * 109.91490 * 122.94603 * 4 2 1 36 36 H 1.09002 * 110.07161 * 1.76186 * 4 2 1 37 37 H 1.08000 * 119.43166 * 0.02562 * 9 8 6 38 38 H 0.96703 * 113.99651 * 89.99770 * 15 14 12 39 39 H 1.07997 * 120.97184 * 359.97251 * 18 17 16 40 40 H 1.09004 * 110.66577 * 157.50756 * 19 5 4 41 41 H 1.08998 * 110.66842 * 280.62471 * 19 5 4 42 42 H 1.08998 * 109.47027 * 48.64551 * 22 20 19 43 43 H 1.09002 * 109.47599 * 168.65179 * 22 20 19 44 44 H 0.97000 * 119.99721 * 0.02562 * 23 22 20 45 45 H 0.97001 * 119.99709 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7682 -1.2229 5 7 2.8298 -1.9203 -0.7102 6 6 3.0646 -3.0860 -1.3447 7 8 3.6209 -3.9951 -0.7599 8 6 2.6462 -3.2588 -2.7504 9 6 2.5728 -4.5369 -3.3150 10 7 2.2072 -4.7072 -4.5661 11 6 1.8888 -3.6849 -5.3459 12 7 1.4830 -3.5849 -6.6599 13 1 1.3545 -4.3212 -7.2781 14 6 1.2947 -2.2604 -6.9317 15 8 0.8944 -1.7618 -8.1237 16 7 1.5594 -1.5452 -5.8701 17 6 1.9327 -2.3666 -4.8539 18 6 2.3155 -2.1479 -3.5313 19 6 3.2817 -1.5368 0.6472 20 6 2.0694 -0.7720 1.2263 21 1 1.3210 -1.4693 1.6032 22 6 2.5072 0.1968 2.3266 23 7 2.9001 -0.5616 3.5170 24 6 3.3317 0.0974 4.6371 25 1 3.3821 1.1762 4.6431 26 6 3.7046 -0.6212 5.7647 27 7 4.1189 0.0122 6.8414 28 14 3.6182 -2.4872 5.7539 29 1 4.9119 -3.0399 5.2786 30 1 3.3453 -2.9781 7.1286 31 1 2.5285 -2.9271 4.8459 32 1 -0.3633 -1.0276 0.0122 33 1 -0.3633 0.5244 0.8838 34 1 -0.3633 0.5031 -0.8961 35 1 2.7167 -0.1222 -1.8112 36 1 1.2355 -1.1172 -1.8377 37 1 2.8246 -5.3979 -2.7137 38 1 -0.0652 -1.6844 -8.2153 39 1 2.3596 -1.1489 -3.1235 40 1 3.4981 -2.4221 1.2451 41 1 4.1541 -0.8857 0.5926 42 1 3.3540 0.7865 1.9757 43 1 1.6799 0.8613 2.5760 44 1 2.8553 -1.5306 3.5113 45 1 4.3798 -0.4900 7.6292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106346965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:58 Heat of formation + Delta-G solvation = 50.347082 kcal Electronic energy + Delta-G solvation = -29629.225940 eV Core-core repulsion = 25456.333508 eV Total energy + Delta-G solvation = -4172.892432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.96419 -40.60622 -39.19890 -38.08775 -37.26741 -35.04175 -34.31880 -33.05167 -31.98020 -31.49293 -29.91498 -29.46310 -26.85534 -26.00761 -24.57480 -23.93247 -22.83496 -22.40458 -21.24219 -20.21822 -20.10525 -19.83867 -18.90890 -17.84605 -17.54868 -17.10493 -16.50102 -16.38923 -15.96683 -15.53049 -15.19776 -14.73139 -14.54711 -14.30192 -13.95836 -13.81522 -13.57770 -13.36347 -13.21368 -12.89824 -12.82764 -12.66175 -12.45630 -12.18019 -12.09059 -11.74673 -11.53701 -11.51288 -11.39506 -10.92730 -10.64964 -10.56701 -10.42109 -10.26346 -10.09472 -9.69737 -9.57462 -9.45681 -9.04837 -8.89474 -8.76402 -7.23136 -5.75613 -3.11594 0.10973 0.33760 1.48950 1.96449 2.56841 2.69479 2.97018 3.38662 3.41461 3.45135 3.49515 3.67641 4.04337 4.16126 4.29811 4.34574 4.46795 4.61539 4.66714 4.71992 4.78191 5.09217 5.14281 5.23122 5.32872 5.38758 5.43658 5.50344 5.54011 5.61698 5.67139 5.68299 5.84104 5.90113 5.93170 5.99591 6.03131 6.09164 6.16007 6.33761 6.60753 6.71026 6.79920 6.95188 7.24979 7.39127 7.95339 7.99559 8.43127 9.21913 9.94466 10.13407 11.42583 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.002330 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.319509 B =12013.984004 C =12994.369994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.093 3.907 5 N -0.614 5.614 6 C 0.585 3.415 7 O -0.529 6.529 8 C -0.185 4.185 9 C 0.201 3.799 10 N -0.483 5.483 11 C 0.268 3.732 12 N -0.587 5.587 13 H 0.430 0.570 14 C 0.466 3.534 15 O -0.436 6.436 16 N -0.467 5.467 17 C 0.005 3.995 18 C 0.003 3.997 19 C 0.112 3.888 20 C -0.107 4.107 21 H 0.084 0.916 22 C 0.169 3.831 23 N -0.756 5.756 24 C -0.245 4.245 25 H 0.090 0.910 26 C 0.005 3.995 27 N -0.934 5.934 28 Si 0.883 3.117 29 H -0.283 1.283 30 H -0.291 1.291 31 H -0.277 1.277 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.184 0.816 38 H 0.415 0.585 39 H 0.167 0.833 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 -4.718 -31.711 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.030 4.030 5 N -0.347 5.347 6 C 0.373 3.627 7 O -0.407 6.407 8 C -0.192 4.192 9 C 0.032 3.968 10 N -0.195 5.195 11 C 0.031 3.969 12 N -0.215 5.215 13 H 0.270 0.730 14 C 0.161 3.839 15 O -0.238 6.238 16 N -0.199 5.199 17 C -0.115 4.115 18 C -0.024 4.024 19 C -0.009 4.009 20 C -0.127 4.127 21 H 0.103 0.897 22 C 0.042 3.958 23 N -0.402 5.402 24 C -0.375 4.375 25 H 0.108 0.892 26 C -0.191 4.191 27 N -0.581 5.581 28 Si 0.713 3.287 29 H -0.209 1.209 30 H -0.217 1.217 31 H -0.203 1.203 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.201 0.799 38 H 0.274 0.726 39 H 0.184 0.816 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.456 -4.896 -31.858 33.590 hybrid contribution -0.575 -1.673 -0.174 1.778 sum -10.031 -6.570 -32.032 34.203 Atomic orbital electron populations 1.21846 0.93954 1.02011 1.02210 1.22113 0.96541 0.99939 0.93288 0.88900 1.22672 0.95486 0.87564 0.97303 1.48699 1.53088 1.14430 1.18451 1.17378 0.79319 0.81143 0.84843 1.90837 1.43247 1.39524 1.67075 1.20711 1.07797 0.94976 0.95762 1.22821 0.89528 0.96373 0.88035 1.66527 1.15332 1.32383 1.05292 1.18806 1.00127 0.92261 0.85688 1.43045 1.58516 1.09585 1.10337 0.72965 1.20173 0.98290 0.78373 0.87081 1.84870 1.30334 1.81944 1.26623 1.70745 1.20906 1.30868 0.97354 1.19327 1.07360 0.89851 0.94971 1.21733 0.90277 1.00955 0.89427 1.22604 0.97206 1.00157 0.80963 1.22586 0.97084 0.98026 0.95011 0.89744 1.20607 0.97277 0.92543 0.85385 1.42731 1.80932 1.04535 1.12023 1.19028 1.35903 0.93135 0.89406 0.89192 1.24671 1.01147 0.97316 0.95942 1.69700 1.50478 1.34361 1.03604 0.86576 0.78039 0.87266 0.76821 1.20917 1.21748 1.20291 0.92678 0.91604 0.92545 0.90688 0.90140 0.79948 0.72570 0.81615 0.89349 0.89960 0.95117 0.94984 0.80599 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.90 37.16 0.33 -0.97 16 2 C -0.10 -1.01 3.17 -89.24 -0.28 -1.29 16 3 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 4 C 0.09 0.86 4.66 -2.98 -0.01 0.84 16 5 N -0.61 -7.62 3.29 -171.15 -0.56 -8.19 16 6 C 0.58 7.89 7.77 -12.41 -0.10 7.79 16 7 O -0.53 -8.96 16.66 5.30 0.09 -8.87 16 8 C -0.18 -2.03 5.82 -104.85 -0.61 -2.64 16 9 C 0.20 2.11 10.74 -17.09 -0.18 1.93 16 10 N -0.48 -5.07 10.36 -11.91 -0.12 -5.20 16 11 C 0.27 2.62 8.45 -155.42 -1.31 1.31 16 12 N -0.59 -3.87 6.23 -13.35 -0.08 -3.96 16 13 H 0.43 1.51 8.96 -40.82 -0.37 1.15 16 14 C 0.47 3.33 9.39 -88.84 -0.83 2.49 16 15 O -0.44 -1.75 13.63 -17.50 -0.24 -1.98 16 16 N -0.47 -4.65 11.32 -12.21 -0.14 -4.78 16 17 C 0.00 0.05 7.22 -84.67 -0.61 -0.56 16 18 C 0.00 0.03 8.35 -38.58 -0.32 -0.29 16 19 C 0.11 1.61 6.47 -2.32 -0.01 1.60 16 20 C -0.11 -1.49 2.60 -88.93 -0.23 -1.72 16 21 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 22 C 0.17 3.00 5.59 -4.04 -0.02 2.98 16 23 N -0.76 -17.45 5.33 -59.90 -0.32 -17.77 16 24 C -0.24 -6.85 10.47 -15.06 -0.16 -7.00 16 25 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 26 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 27 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 28 Si 0.88 22.37 27.74 -169.99 -4.71 17.66 16 29 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 31 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.57 7.19 -51.93 -0.37 0.20 16 36 H 0.08 0.65 5.87 -51.93 -0.30 0.35 16 37 H 0.18 1.72 7.72 -52.49 -0.41 1.32 16 38 H 0.41 -0.66 9.06 45.56 0.41 -0.25 16 39 H 0.17 1.38 4.06 -52.49 -0.21 1.17 16 40 H 0.09 1.47 7.81 -51.93 -0.41 1.07 16 41 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 42 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.36 8.28 5.53 -40.82 -0.23 8.05 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -37.24 371.13 -8.99 -46.23 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.81 Total: 5.32 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -4.46 Total: 4.51 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -0.45 Total: -68.46 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.15 Total: -10.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.24 -8.99 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106346965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.579 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds