Wall clock time and date at job start Wed Apr 1 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.29199 * 2 1 4 4 C 1.54001 * 110.32773 * 237.86272 * 2 1 3 5 5 N 1.47484 * 107.08597 * 242.31123 * 4 2 1 6 6 C 1.34775 * 127.03315 * 154.51746 * 5 4 2 7 7 O 1.21651 * 119.99918 * 185.62967 * 6 5 4 8 8 C 1.47056 * 120.00333 * 5.62717 * 6 5 4 9 9 C 1.35876 * 125.43326 * 186.78209 * 8 6 5 10 10 C 1.41583 * 107.74026 * 180.02562 * 9 8 6 11 11 C 1.40119 * 133.34502 * 180.02562 * 10 9 8 12 12 C 1.36620 * 119.80882 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.71437 * 179.97438 * 12 11 10 14 14 C 1.39118 * 120.56274 * 359.97438 * 12 11 10 15 15 C 1.37661 * 120.62991 * 0.28052 * 14 12 11 16 16 C 1.39220 * 119.83880 * 359.44709 * 15 14 12 17 17 N 1.37570 * 133.15243 * 180.18894 * 16 15 14 18 18 H 0.97001 * 125.61291 * 0.28117 * 17 16 15 19 19 C 1.48114 * 105.93186 * 334.78092 * 5 4 2 20 20 C 1.54592 * 103.42543 * 39.02099 * 19 5 4 21 21 H 1.09003 * 110.57344 * 81.16813 * 20 19 5 22 22 C 1.52994 * 110.99169 * 204.37231 * 20 19 5 23 23 N 1.46496 * 109.47503 * 288.65518 * 22 20 19 24 24 C 1.36937 * 120.00316 * 179.97438 * 23 22 20 25 25 H 1.07996 * 120.00101 * 359.97438 * 24 23 22 26 26 C 1.38819 * 120.00233 * 179.97438 * 24 23 22 27 27 N 1.31614 * 119.99475 * 0.02562 * 26 24 23 28 28 Si 1.86790 * 120.00083 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47003 * 60.00386 * 28 26 24 30 30 H 1.48502 * 109.47320 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47402 * 300.00316 * 28 26 24 32 32 H 1.08997 * 109.46904 * 180.68175 * 1 2 3 33 33 H 1.09002 * 109.46795 * 300.68563 * 1 2 3 34 34 H 1.09003 * 109.46676 * 60.68155 * 1 2 3 35 35 H 1.09000 * 109.91021 * 122.95106 * 4 2 1 36 36 H 1.08996 * 109.91254 * 1.67682 * 4 2 1 37 37 H 1.07996 * 126.13017 * 0.03947 * 9 8 6 38 38 H 1.07997 * 120.09842 * 0.02562 * 11 10 9 39 39 H 1.08007 * 119.68483 * 180.02562 * 14 12 11 40 40 H 1.07997 * 120.08161 * 179.70794 * 15 14 12 41 41 H 1.09005 * 110.66183 * 157.50953 * 19 5 4 42 42 H 1.08998 * 110.66165 * 280.61939 * 19 5 4 43 43 H 1.09001 * 109.46967 * 48.65534 * 22 20 19 44 44 H 1.09002 * 109.47643 * 168.65335 * 22 20 19 45 45 H 0.97003 * 119.99778 * 359.97438 * 23 22 20 46 46 H 0.97005 * 119.99854 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3447 7 8 3.6272 -3.9933 -0.7617 8 6 2.6404 -3.2610 -2.7419 9 6 2.7018 -4.4226 -3.4441 10 6 2.2012 -4.1680 -4.7438 11 6 2.0244 -4.9684 -5.8802 12 6 1.5040 -4.4239 -7.0201 13 9 1.3348 -5.1973 -8.1148 14 6 1.1470 -3.0800 -7.0630 15 6 1.3167 -2.2736 -5.9603 16 6 1.8398 -2.8074 -4.7857 17 7 2.1166 -2.2705 -3.5498 18 1 1.9693 -1.3478 -3.2889 19 6 3.2816 -1.5368 0.6472 20 6 2.0693 -0.7720 1.2263 21 1 1.3210 -1.4692 1.6031 22 6 2.5071 0.1966 2.3267 23 7 2.9001 -0.5617 3.5169 24 6 3.3318 0.0972 4.6370 25 1 3.3829 1.1759 4.6429 26 6 3.7036 -0.6214 5.7651 27 7 3.6418 -1.9360 5.7577 28 14 4.2931 0.2775 7.2927 29 1 3.2201 1.1808 7.7805 30 1 4.6279 -0.7102 8.3499 31 1 5.5004 1.0764 6.9621 32 1 -0.3633 -1.0276 0.0122 33 1 -0.3633 0.5245 0.8838 34 1 -0.3633 0.5032 -0.8961 35 1 2.7167 -0.1221 -1.8111 36 1 1.2334 -1.1173 -1.8349 37 1 3.0668 -5.3703 -3.0767 38 1 2.2986 -6.0127 -5.8551 39 1 0.7364 -2.6645 -7.9715 40 1 1.0409 -1.2304 -6.0050 41 1 3.4981 -2.4223 1.2450 42 1 4.1541 -0.8858 0.5926 43 1 3.3539 0.7864 1.9757 44 1 1.6800 0.8612 2.5761 45 1 2.8546 -1.5307 3.5116 46 1 3.9020 -2.4382 6.5458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106505048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:41 Heat of formation + Delta-G solvation = -0.619450 kcal Electronic energy + Delta-G solvation = -29233.476340 eV Core-core repulsion = 25038.453872 eV Total energy + Delta-G solvation = -4195.022468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.09606 -42.03242 -40.04493 -38.08699 -36.89270 -34.78599 -33.08240 -32.61882 -31.53739 -30.02054 -29.50930 -28.86967 -26.79857 -25.89382 -24.09199 -23.16873 -22.52128 -21.61398 -21.06230 -20.21210 -20.07215 -18.13076 -17.88609 -17.28422 -17.00587 -16.20254 -16.10600 -15.89021 -15.62115 -15.06126 -14.82101 -14.56263 -14.38603 -14.20460 -13.94286 -13.74037 -13.55808 -13.48407 -13.36221 -13.07270 -13.04177 -12.89970 -12.50181 -12.23394 -12.05987 -11.62659 -11.46168 -11.35611 -11.20350 -10.90176 -10.70274 -10.59151 -10.49176 -10.37543 -10.25543 -10.07509 -9.71262 -8.93855 -8.87793 -8.55334 -8.21303 -6.97181 -5.78686 -3.08732 0.28831 1.00794 1.73340 2.44237 2.73912 3.08353 3.32193 3.42268 3.46589 3.48176 3.92184 4.13591 4.17653 4.28750 4.49627 4.50415 4.62604 4.66974 4.76462 4.86910 4.91391 5.05106 5.07043 5.22876 5.35601 5.36415 5.51072 5.52068 5.56097 5.59867 5.63424 5.76519 5.79518 5.81373 5.87349 5.99293 6.04716 6.05380 6.14748 6.23901 6.30591 6.33520 6.58982 6.62357 6.73790 6.91722 7.31423 7.66059 7.90301 8.39169 9.50422 10.06615 10.40743 11.43690 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.220904 B =14053.958765 C =14841.406375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.090 3.910 5 N -0.619 5.619 6 C 0.596 3.404 7 O -0.513 6.513 8 C 0.038 3.962 9 C -0.111 4.111 10 C -0.092 4.092 11 C -0.097 4.097 12 C 0.069 3.931 13 F -0.143 7.143 14 C -0.123 4.123 15 C -0.098 4.098 16 C 0.097 3.903 17 N -0.577 5.577 18 H 0.421 0.579 19 C 0.115 3.885 20 C -0.102 4.102 21 H 0.086 0.914 22 C 0.166 3.834 23 N -0.732 5.732 24 C -0.244 4.244 25 H 0.070 0.930 26 C -0.012 4.012 27 N -0.931 5.931 28 Si 0.908 3.092 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.286 1.286 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.385 0.615 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 1.172 -27.216 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.110 0.890 4 C -0.033 4.033 5 N -0.352 5.352 6 C 0.384 3.616 7 O -0.388 6.388 8 C -0.072 4.072 9 C -0.138 4.138 10 C -0.097 4.097 11 C -0.117 4.117 12 C 0.049 3.951 13 F -0.122 7.122 14 C -0.144 4.144 15 C -0.119 4.119 16 C -0.013 4.013 17 N -0.186 5.186 18 H 0.265 0.735 19 C -0.006 4.006 20 C -0.122 4.122 21 H 0.104 0.896 22 C 0.038 3.962 23 N -0.377 5.377 24 C -0.375 4.375 25 H 0.088 0.912 26 C -0.208 4.208 27 N -0.579 5.579 28 Si 0.739 3.261 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.213 1.213 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.178 0.822 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.796 0.828 -26.738 27.601 hybrid contribution 0.169 0.563 0.759 0.960 sum -6.626 1.391 -25.980 26.847 Atomic orbital electron populations 1.21858 0.93881 1.02163 1.02172 1.22075 0.96529 0.99780 0.93300 0.89005 1.22465 0.95040 0.87950 0.97864 1.48773 1.53339 1.14213 1.18899 1.16762 0.79651 0.81415 0.83751 1.90907 1.42418 1.39535 1.65892 1.20260 1.05484 0.89482 0.92010 1.20896 1.03391 0.97988 0.91525 1.17876 1.04661 0.92648 0.94554 1.20306 1.00115 1.00610 0.90630 1.17009 1.04735 0.89373 0.83973 1.91495 1.93801 1.74791 1.52097 1.20830 1.02144 0.92009 0.99375 1.19898 1.01992 1.00120 0.89858 1.18387 1.02432 0.93409 0.87099 1.42641 1.54509 1.11867 1.09569 0.73531 1.22604 0.97002 1.00516 0.80473 1.22534 0.97076 0.97921 0.94625 0.89569 1.20612 0.96634 0.92654 0.86342 1.42354 1.79294 1.05935 1.10110 1.19142 1.36399 0.91200 0.90794 0.91230 1.24762 1.02234 0.95501 0.98338 1.69649 1.54042 1.04542 1.29629 0.86264 0.78583 0.78356 0.82918 1.21281 1.21666 1.21256 0.92525 0.91440 0.92741 0.91197 0.91028 0.82183 0.84343 0.84230 0.84858 0.88728 0.90245 0.96072 0.95825 0.78170 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 37.16 0.33 -0.96 16 2 C -0.10 -0.98 3.17 -89.25 -0.28 -1.27 16 3 H 0.09 0.84 7.85 -51.93 -0.41 0.44 16 4 C 0.09 0.81 4.99 -2.98 -0.01 0.80 16 5 N -0.62 -7.98 3.29 -171.39 -0.56 -8.54 16 6 C 0.60 8.62 7.86 -12.69 -0.10 8.52 16 7 O -0.51 -9.39 17.04 5.23 0.09 -9.30 16 8 C 0.04 0.44 6.77 -82.29 -0.56 -0.12 16 9 C -0.11 -1.26 10.54 -39.15 -0.41 -1.67 16 10 C -0.09 -0.94 6.16 -106.93 -0.66 -1.60 16 11 C -0.10 -0.89 10.03 -39.46 -0.40 -1.28 16 12 C 0.07 0.61 7.24 -39.84 -0.29 0.33 16 13 F -0.14 -1.37 17.25 2.25 0.04 -1.33 16 14 C -0.12 -0.88 9.99 -39.47 -0.39 -1.28 16 15 C -0.10 -0.68 10.07 -39.43 -0.40 -1.08 16 16 C 0.10 0.88 7.25 -83.94 -0.61 0.27 16 17 N -0.58 -5.13 5.47 -7.34 -0.04 -5.17 16 18 H 0.42 2.77 5.36 -40.82 -0.22 2.55 16 19 C 0.12 1.75 6.47 -2.32 -0.01 1.73 16 20 C -0.10 -1.47 2.60 -88.93 -0.23 -1.71 16 21 H 0.09 1.37 7.86 -51.93 -0.41 0.97 16 22 C 0.17 3.02 5.58 -4.05 -0.02 3.00 16 23 N -0.73 -17.81 5.52 -59.91 -0.33 -18.15 16 24 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 25 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 26 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 27 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 28 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.49 7.91 -51.93 -0.41 0.08 16 36 H 0.07 0.53 5.68 -51.93 -0.30 0.24 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.09 1.72 7.81 -51.93 -0.41 1.31 16 42 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 43 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -33.07 382.65 -9.85 -42.92 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.22 Total: 7.52 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -4.29 Total: -3.58 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.21 Total: -59.18 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.07 -9.85 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106505048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds