Wall clock time and date at job start Wed Apr 1 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.29199 * 2 1 4 4 C 1.54001 * 110.32773 * 237.86272 * 2 1 3 5 5 N 1.47484 * 107.08597 * 242.31123 * 4 2 1 6 6 C 1.34775 * 127.03315 * 154.51746 * 5 4 2 7 7 O 1.21651 * 119.99918 * 185.62967 * 6 5 4 8 8 C 1.47056 * 120.00333 * 5.62717 * 6 5 4 9 9 C 1.35876 * 125.43326 * 186.78209 * 8 6 5 10 10 C 1.41583 * 107.74026 * 180.02562 * 9 8 6 11 11 C 1.40119 * 133.34502 * 180.02562 * 10 9 8 12 12 C 1.36620 * 119.80882 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.71437 * 179.97438 * 12 11 10 14 14 C 1.39118 * 120.56274 * 359.97438 * 12 11 10 15 15 C 1.37661 * 120.62991 * 0.28052 * 14 12 11 16 16 C 1.39220 * 119.83880 * 359.44709 * 15 14 12 17 17 N 1.37570 * 133.15243 * 180.18894 * 16 15 14 18 18 H 0.97001 * 125.61291 * 0.28117 * 17 16 15 19 19 C 1.48114 * 105.93186 * 334.78092 * 5 4 2 20 20 C 1.54592 * 103.42543 * 39.02099 * 19 5 4 21 21 H 1.09003 * 110.57344 * 81.16813 * 20 19 5 22 22 C 1.52994 * 110.99169 * 204.37231 * 20 19 5 23 23 N 1.46496 * 109.47503 * 288.65518 * 22 20 19 24 24 C 1.36937 * 120.00316 * 179.97438 * 23 22 20 25 25 H 1.07996 * 120.00101 * 359.97438 * 24 23 22 26 26 C 1.38819 * 120.00233 * 179.97438 * 24 23 22 27 27 N 1.31614 * 119.99475 * 0.02562 * 26 24 23 28 28 Si 1.86790 * 120.00083 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47003 * 60.00386 * 28 26 24 30 30 H 1.48502 * 109.47320 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47402 * 300.00316 * 28 26 24 32 32 H 1.08997 * 109.46904 * 180.68175 * 1 2 3 33 33 H 1.09002 * 109.46795 * 300.68563 * 1 2 3 34 34 H 1.09003 * 109.46676 * 60.68155 * 1 2 3 35 35 H 1.09000 * 109.91021 * 122.95106 * 4 2 1 36 36 H 1.08996 * 109.91254 * 1.67682 * 4 2 1 37 37 H 1.07996 * 126.13017 * 0.03947 * 9 8 6 38 38 H 1.07997 * 120.09842 * 0.02562 * 11 10 9 39 39 H 1.08007 * 119.68483 * 180.02562 * 14 12 11 40 40 H 1.07997 * 120.08161 * 179.70794 * 15 14 12 41 41 H 1.09005 * 110.66183 * 157.50953 * 19 5 4 42 42 H 1.08998 * 110.66165 * 280.61939 * 19 5 4 43 43 H 1.09001 * 109.46967 * 48.65534 * 22 20 19 44 44 H 1.09002 * 109.47643 * 168.65335 * 22 20 19 45 45 H 0.97003 * 119.99778 * 359.97438 * 23 22 20 46 46 H 0.97005 * 119.99854 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3447 7 8 3.6272 -3.9933 -0.7617 8 6 2.6404 -3.2610 -2.7419 9 6 2.7018 -4.4226 -3.4441 10 6 2.2012 -4.1680 -4.7438 11 6 2.0244 -4.9684 -5.8802 12 6 1.5040 -4.4239 -7.0201 13 9 1.3348 -5.1973 -8.1148 14 6 1.1470 -3.0800 -7.0630 15 6 1.3167 -2.2736 -5.9603 16 6 1.8398 -2.8074 -4.7857 17 7 2.1166 -2.2705 -3.5498 18 1 1.9693 -1.3478 -3.2889 19 6 3.2816 -1.5368 0.6472 20 6 2.0693 -0.7720 1.2263 21 1 1.3210 -1.4692 1.6031 22 6 2.5071 0.1966 2.3267 23 7 2.9001 -0.5617 3.5169 24 6 3.3318 0.0972 4.6370 25 1 3.3829 1.1759 4.6429 26 6 3.7036 -0.6214 5.7651 27 7 3.6418 -1.9360 5.7577 28 14 4.2931 0.2775 7.2927 29 1 3.2201 1.1808 7.7805 30 1 4.6279 -0.7102 8.3499 31 1 5.5004 1.0764 6.9621 32 1 -0.3633 -1.0276 0.0122 33 1 -0.3633 0.5245 0.8838 34 1 -0.3633 0.5032 -0.8961 35 1 2.7167 -0.1221 -1.8111 36 1 1.2334 -1.1173 -1.8349 37 1 3.0668 -5.3703 -3.0767 38 1 2.2986 -6.0127 -5.8551 39 1 0.7364 -2.6645 -7.9715 40 1 1.0409 -1.2304 -6.0050 41 1 3.4981 -2.4223 1.2450 42 1 4.1541 -0.8858 0.5926 43 1 3.3539 0.7864 1.9757 44 1 1.6800 0.8612 2.5761 45 1 2.8546 -1.5307 3.5116 46 1 3.9020 -2.4382 6.5458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106505048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:40 Heat of formation + Delta-G solvation = -20.992040 kcal Electronic energy + Delta-G solvation = -29234.359762 eV Core-core repulsion = 25038.453872 eV Total energy + Delta-G solvation = -4195.905890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.79053 -42.81243 -41.06780 -39.22177 -37.61125 -36.49930 -34.32630 -33.35585 -33.10206 -31.21255 -30.24228 -29.96687 -27.66228 -27.27364 -25.45263 -24.37327 -23.35622 -22.63768 -22.00884 -21.22352 -21.07299 -19.31496 -18.75699 -18.60971 -17.96465 -17.34701 -17.03398 -16.68916 -16.51144 -16.47925 -15.94189 -15.69321 -15.27631 -15.17999 -15.04716 -14.92035 -14.82072 -14.50882 -14.25847 -14.14715 -14.04518 -13.68947 -13.60501 -13.41469 -13.20366 -12.94038 -12.72913 -12.50452 -12.31105 -12.21062 -11.98750 -11.96035 -11.83829 -11.62633 -11.50863 -11.37598 -11.07936 -10.92810 -9.97787 -9.27675 -9.00253 -8.91671 -7.94649 -5.24071 -0.45241 0.34642 0.89808 1.46879 1.50091 1.53415 1.56325 1.86698 2.10617 2.55945 2.65110 3.13823 3.35287 3.39083 3.41814 3.55310 3.61248 3.74970 3.92427 4.04126 4.08397 4.16098 4.23713 4.27518 4.30960 4.40383 4.46921 4.53593 4.57271 4.70153 4.75464 4.79986 4.83495 4.91712 4.96894 5.02405 5.14815 5.16609 5.19334 5.22720 5.31103 5.39650 5.46701 5.48111 5.51071 5.92182 6.25493 6.26633 6.32624 6.80425 7.32724 8.09378 8.30253 9.28743 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.220904 B =14053.958765 C =14841.406375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.113 0.887 4 C 0.087 3.913 5 N -0.616 5.616 6 C 0.592 3.408 7 O -0.568 6.568 8 C 0.024 3.976 9 C -0.118 4.118 10 C -0.114 4.114 11 C -0.108 4.108 12 C 0.059 3.941 13 F -0.149 7.149 14 C -0.116 4.116 15 C -0.088 4.088 16 C 0.099 3.901 17 N -0.561 5.561 18 H 0.433 0.567 19 C 0.118 3.882 20 C -0.094 4.094 21 H 0.065 0.935 22 C 0.165 3.835 23 N -0.748 5.748 24 C -0.243 4.243 25 H 0.081 0.919 26 C -0.080 4.080 27 N -0.972 5.972 28 Si 0.975 3.025 29 H -0.275 1.275 30 H -0.299 1.299 31 H -0.277 1.277 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.371 0.629 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 4.548 -30.174 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.131 0.869 4 C -0.034 4.034 5 N -0.348 5.348 6 C 0.382 3.618 7 O -0.447 6.447 8 C -0.086 4.086 9 C -0.146 4.146 10 C -0.119 4.119 11 C -0.128 4.128 12 C 0.039 3.961 13 F -0.128 7.128 14 C -0.136 4.136 15 C -0.108 4.108 16 C -0.012 4.012 17 N -0.171 5.171 18 H 0.279 0.721 19 C -0.005 4.005 20 C -0.113 4.113 21 H 0.084 0.916 22 C 0.039 3.961 23 N -0.391 5.391 24 C -0.375 4.375 25 H 0.099 0.901 26 C -0.272 4.272 27 N -0.623 5.623 28 Si 0.804 3.196 29 H -0.201 1.201 30 H -0.226 1.226 31 H -0.203 1.203 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.202 0.798 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.230 4.303 -29.744 31.160 hybrid contribution 0.556 -0.478 1.531 1.697 sum -7.674 3.825 -28.213 29.488 Atomic orbital electron populations 1.21858 0.92707 1.01835 1.03458 1.22077 0.97421 1.00146 0.90898 0.86867 1.22787 0.96045 0.86770 0.97832 1.48773 1.53156 1.14953 1.17878 1.17157 0.78910 0.81002 0.84698 1.90869 1.45064 1.41427 1.67370 1.19731 1.07463 0.90573 0.90865 1.21000 1.03240 0.97900 0.92433 1.17942 1.05811 0.93890 0.94224 1.20407 1.00548 1.01055 0.90745 1.17259 1.04946 0.90289 0.83579 1.91482 1.93857 1.75178 1.52308 1.21197 1.00839 0.91006 1.00548 1.20291 1.00429 1.01805 0.88317 1.18659 1.02044 0.92883 0.87598 1.42434 1.53805 1.11818 1.09034 0.72055 1.22373 0.97673 0.98805 0.81610 1.22339 0.96230 0.97303 0.95466 0.91648 1.20800 0.96956 0.93064 0.85321 1.42631 1.79322 1.05675 1.11458 1.19621 1.34488 0.91837 0.91527 0.90130 1.25625 1.03661 0.96242 1.01685 1.69832 1.56193 1.06184 1.30078 0.85191 0.78430 0.77040 0.78972 1.20144 1.22594 1.20269 0.93650 0.92382 0.89295 0.87699 0.88768 0.82956 0.83944 0.81408 0.81064 0.93075 0.89988 0.95026 0.94939 0.79793 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.90 71.98 0.64 -1.46 16 2 C -0.09 -1.49 3.17 -9.90 -0.03 -1.52 16 3 H 0.11 1.57 7.85 -2.39 -0.02 1.55 16 4 C 0.09 1.29 4.99 86.53 0.43 1.72 16 5 N -0.62 -15.75 3.29 -814.38 -2.68 -18.43 16 6 C 0.59 17.75 7.86 86.56 0.68 18.43 16 7 O -0.57 -22.55 17.04 -4.19 -0.07 -22.62 16 8 C 0.02 0.56 6.77 39.92 0.27 0.83 16 9 C -0.12 -2.75 10.54 22.55 0.24 -2.52 16 10 C -0.11 -2.23 6.16 -21.36 -0.13 -2.36 16 11 C -0.11 -1.89 10.03 22.35 0.22 -1.66 16 12 C 0.06 0.93 7.24 22.10 0.16 1.09 16 13 F -0.15 -2.62 17.25 44.97 0.78 -1.85 16 14 C -0.12 -1.21 9.99 22.34 0.22 -0.99 16 15 C -0.09 -0.82 10.07 22.37 0.23 -0.60 16 16 C 0.10 1.51 7.25 39.11 0.28 1.79 16 17 N -0.56 -8.45 5.47 -177.14 -0.97 -9.42 16 18 H 0.43 3.89 5.36 -92.71 -0.50 3.39 16 19 C 0.12 3.71 6.47 86.61 0.56 4.27 16 20 C -0.09 -2.70 2.60 -9.70 -0.03 -2.72 16 21 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 22 C 0.17 5.94 5.58 86.38 0.48 6.42 16 23 N -0.75 -37.26 5.52 -343.47 -1.90 -39.15 16 24 C -0.24 -13.37 9.99 84.04 0.84 -12.53 16 25 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 26 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 27 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 28 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 29 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 30 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 31 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.93 7.91 -2.39 -0.02 0.91 16 36 H 0.09 1.01 5.68 -2.39 -0.01 1.00 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.05 2.05 7.81 -2.38 -0.02 2.03 16 42 H 0.08 2.51 7.95 -2.39 -0.02 2.49 16 43 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16 46 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -76.63 382.65 2.82 -73.81 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.18 Total: 25.87 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.54 Total: 4.03 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.27 Total: -127.47 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.07 Total: -22.62 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.63 2.82 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106505048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.813 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds