Wall clock time and date at job start Wed Apr 1 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.30260 * 2 1 4 4 C 1.54388 * 110.34319 * 237.71177 * 2 1 3 5 5 N 1.48141 * 104.62116 * 264.99569 * 4 2 1 6 6 C 1.34778 * 127.84190 * 140.40335 * 5 4 2 7 7 O 1.21556 * 119.99570 * 354.48023 * 6 5 4 8 8 C 1.47849 * 120.00108 * 174.47695 * 6 5 4 9 9 C 1.39718 * 119.43834 * 184.58649 * 8 6 5 10 10 C 1.37002 * 119.59219 * 179.72489 * 9 8 6 11 11 C 1.39888 * 118.36810 * 0.57696 * 10 9 8 12 12 N 1.35425 * 133.68411 * 179.69233 * 11 10 9 13 13 C 1.30932 * 109.56714 * 179.97438 * 12 11 10 14 14 O 1.35184 * 124.99554 * 180.02562 * 13 12 11 15 15 N 1.36388 * 110.00985 * 0.02562 * 13 12 11 16 16 H 0.96993 * 126.32020 * 179.97438 * 15 13 12 17 17 C 1.38260 * 107.35597 * 0.02562 * 15 13 12 18 18 N 1.31760 * 133.71067 * 179.97438 * 17 15 13 19 19 C 1.48322 * 104.39168 * 320.47310 * 5 4 2 20 20 C 1.54293 * 110.34245 * 122.17541 * 2 1 3 21 21 H 1.08994 * 110.33975 * 359.89866 * 20 2 1 22 22 C 1.52995 * 110.34079 * 237.73957 * 20 2 1 23 23 N 1.46504 * 109.46998 * 176.47193 * 22 20 2 24 24 C 1.36938 * 119.99740 * 180.27289 * 23 22 20 25 25 H 1.08001 * 120.00446 * 359.73762 * 24 23 22 26 26 C 1.38819 * 119.99543 * 179.72765 * 24 23 22 27 27 N 1.31616 * 120.00100 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99562 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47158 * 90.00071 * 28 26 24 30 30 H 1.48504 * 109.46517 * 210.00018 * 28 26 24 31 31 H 1.48498 * 109.47170 * 329.99564 * 28 26 24 32 32 H 1.08998 * 109.47100 * 297.82375 * 1 2 3 33 33 H 1.08992 * 109.47187 * 57.82390 * 1 2 3 34 34 H 1.08998 * 109.46849 * 177.82389 * 1 2 3 35 35 H 1.09002 * 110.40668 * 23.78488 * 4 2 1 36 36 H 1.09002 * 110.40871 * 146.09279 * 4 2 1 37 37 H 1.08006 * 120.19937 * 0.02562 * 9 8 6 38 38 H 1.07997 * 120.81308 * 180.24658 * 10 9 8 39 39 H 0.96698 * 114.00096 * 89.97217 * 14 13 12 40 40 H 1.08996 * 110.38171 * 280.73416 * 19 5 4 41 41 H 1.09003 * 110.50539 * 158.24851 * 19 5 4 42 42 H 1.09010 * 109.47091 * 56.47626 * 22 20 2 43 43 H 1.08995 * 109.47523 * 296.47748 * 22 20 2 44 44 H 0.96999 * 119.99962 * 0.02562 * 23 22 20 45 45 H 0.96998 * 120.00274 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1445 -0.7206 6 6 2.0773 -3.3119 -1.3513 7 8 1.5129 -3.3174 -2.4279 8 6 2.5042 -4.5856 -0.7338 9 6 2.3402 -5.7800 -1.4399 10 6 2.7399 -6.9614 -0.8730 11 6 3.2925 -6.9288 0.4117 12 7 3.7730 -7.8797 1.2477 13 6 4.1850 -7.3203 2.3575 14 8 4.7226 -7.9825 3.4063 15 7 3.9921 -5.9714 2.2998 16 1 4.2125 -5.3294 2.9926 17 6 3.4234 -5.6882 1.0718 18 7 3.0297 -4.5759 0.4855 19 6 2.8797 -1.9432 0.6356 20 6 2.0664 -0.7704 1.2245 21 1 1.2399 -1.1472 1.8269 22 6 2.9692 0.1326 2.0673 23 7 3.3995 -0.5899 3.2669 24 6 4.2152 0.0236 4.1799 25 1 4.5448 1.0385 4.0135 26 6 4.6183 -0.6591 5.3194 27 7 4.2170 -1.8961 5.5220 28 14 5.7305 0.1780 6.5652 29 1 4.9004 0.8768 7.5789 30 1 6.5774 -0.8410 7.2358 31 1 6.5978 1.1634 5.8710 32 1 -0.3633 0.4797 0.9088 33 1 -0.3633 0.5472 -0.8698 34 1 -0.3633 -1.0269 -0.0390 35 1 1.3223 -0.7889 -2.0198 36 1 2.9939 -0.3244 -1.5803 37 1 1.9055 -5.7713 -2.4286 38 1 2.6260 -7.8956 -1.4027 39 1 5.6841 -8.0753 3.3619 40 1 3.9353 -1.6792 0.5713 41 1 2.7473 -2.8395 1.2415 42 1 2.4180 1.0265 2.3596 43 1 3.8433 0.4197 1.4829 44 1 3.1037 -1.5015 3.4163 45 1 4.4983 -2.3730 6.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106585602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:14 Heat of formation + Delta-G solvation = 42.672158 kcal Electronic energy + Delta-G solvation = -30449.307784 eV Core-core repulsion = 26276.082543 eV Total energy + Delta-G solvation = -4173.225241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.57082 -40.28848 -38.89644 -37.86440 -36.92472 -34.63908 -34.02720 -32.78628 -31.53503 -31.34921 -29.77840 -28.96287 -26.69433 -25.50369 -24.38176 -23.50295 -23.09752 -21.92097 -21.26270 -20.16050 -19.67996 -19.39877 -18.07551 -17.64599 -17.36288 -16.96812 -16.30625 -15.93575 -15.53968 -15.16494 -14.93553 -14.58361 -14.24331 -14.06980 -13.79052 -13.53589 -13.41855 -13.18662 -13.02284 -12.92333 -12.43573 -12.40110 -12.23963 -12.01095 -11.67137 -11.48049 -11.26230 -11.21187 -11.10670 -10.90745 -10.58601 -10.47385 -10.31934 -10.18890 -10.03877 -9.72065 -9.18471 -9.15333 -8.92838 -8.72534 -8.47769 -6.98878 -5.85139 -3.12407 0.20081 1.00046 1.88300 2.19412 2.80556 2.92979 3.32091 3.37256 3.43442 3.43826 3.73237 4.01795 4.24654 4.51090 4.58667 4.65037 4.80921 4.83748 4.86961 5.01271 5.34308 5.40066 5.47441 5.52300 5.56548 5.61789 5.68216 5.76893 5.82024 5.83421 5.91545 6.03288 6.13691 6.16608 6.22008 6.27563 6.29836 6.38269 6.50707 6.59900 6.73646 6.86367 7.17947 7.33361 7.49920 7.60994 7.63405 8.13148 8.34383 9.46224 10.03817 10.39087 11.37971 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007122 B = 0.004601 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.447628 B = 6084.487224 C = 9719.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.108 3.892 5 N -0.600 5.600 6 C 0.593 3.407 7 O -0.541 6.541 8 C 0.120 3.880 9 C -0.121 4.121 10 C -0.029 4.029 11 C 0.037 3.963 12 N -0.486 5.486 13 C 0.481 3.519 14 O -0.436 6.436 15 N -0.578 5.578 16 H 0.441 0.559 17 C 0.249 3.751 18 N -0.433 5.433 19 C 0.102 3.898 20 C -0.106 4.106 21 H 0.080 0.920 22 C 0.163 3.837 23 N -0.732 5.732 24 C -0.235 4.235 25 H 0.070 0.930 26 C -0.014 4.014 27 N -0.936 5.936 28 Si 0.905 3.095 29 H -0.290 1.290 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.416 0.584 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -7.860 -12.536 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.014 4.014 5 N -0.331 5.331 6 C 0.381 3.619 7 O -0.418 6.418 8 C -0.028 4.028 9 C -0.145 4.145 10 C -0.057 4.057 11 C -0.086 4.086 12 N -0.219 5.219 13 C 0.176 3.824 14 O -0.238 6.238 15 N -0.205 5.205 16 H 0.283 0.717 17 C 0.010 3.990 18 N -0.148 5.148 19 C -0.020 4.020 20 C -0.126 4.126 21 H 0.098 0.902 22 C 0.035 3.965 23 N -0.376 5.376 24 C -0.366 4.366 25 H 0.088 0.912 26 C -0.209 4.209 27 N -0.585 5.585 28 Si 0.737 3.263 29 H -0.217 1.217 30 H -0.219 1.219 31 H -0.208 1.208 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.276 0.724 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.457 -8.044 -12.504 15.070 hybrid contribution 1.211 0.588 1.299 1.871 sum -1.246 -7.456 -11.204 13.516 Atomic orbital electron populations 1.21817 0.94504 1.01784 1.01626 1.22124 0.96216 0.99632 0.94152 0.89334 1.22462 1.00904 0.80939 0.97076 1.48874 1.60933 1.04813 1.18495 1.17223 0.79064 0.81666 0.83989 1.90784 1.43091 1.86386 1.21564 1.20840 0.98209 0.94312 0.89454 1.21514 1.00238 0.90706 1.02041 1.20401 0.94848 0.99253 0.91160 1.19694 1.03166 0.89476 0.96276 1.70654 1.20378 1.30516 1.00313 1.20252 0.96238 0.78247 0.87661 1.84828 1.28413 1.72780 1.37761 1.43244 1.52527 1.09177 1.15551 0.71661 1.18561 1.01143 0.91687 0.87588 1.66504 1.10660 1.27863 1.09801 1.23047 0.97089 1.00449 0.81399 1.22439 0.98842 0.95717 0.95570 0.90153 1.20731 0.94297 0.93415 0.88054 1.42356 1.58856 1.15310 1.21041 1.19249 1.20984 0.97180 0.99205 0.91206 1.24685 1.01261 0.96390 0.98575 1.69646 1.49751 1.10550 1.28561 0.86210 0.80251 0.78247 0.81619 1.21745 1.21864 1.20799 0.92225 0.92792 0.92801 0.89921 0.90909 0.82456 0.83162 0.72440 0.90841 0.86567 0.95998 0.96079 0.78333 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.90 37.16 0.33 -1.31 16 2 C -0.10 -1.28 3.31 -89.21 -0.30 -1.58 16 3 H 0.09 1.03 7.71 -51.93 -0.40 0.63 16 4 C 0.11 1.38 6.62 -2.41 -0.02 1.37 16 5 N -0.60 -8.86 3.32 -170.27 -0.57 -9.42 16 6 C 0.59 9.16 7.88 -12.33 -0.10 9.06 16 7 O -0.54 -9.11 16.55 5.32 0.09 -9.02 16 8 C 0.12 1.72 6.73 -82.97 -0.56 1.16 16 9 C -0.12 -1.43 9.55 -39.48 -0.38 -1.80 16 10 C -0.03 -0.32 10.16 -39.41 -0.40 -0.72 16 11 C 0.04 0.49 7.24 -84.56 -0.61 -0.12 16 12 N -0.49 -6.55 11.30 -12.11 -0.14 -6.69 16 13 C 0.48 5.81 9.39 -88.77 -0.83 4.98 16 14 O -0.44 -3.99 13.62 -17.25 -0.23 -4.23 16 15 N -0.58 -7.47 6.25 -13.33 -0.08 -7.56 16 16 H 0.44 5.55 8.96 -40.82 -0.37 5.19 16 17 C 0.25 3.59 8.46 -155.52 -1.32 2.28 16 18 N -0.43 -6.54 6.65 -8.77 -0.06 -6.60 16 19 C 0.10 1.61 5.72 -2.31 -0.01 1.60 16 20 C -0.11 -1.65 2.76 -89.22 -0.25 -1.90 16 21 H 0.08 1.35 7.71 -51.93 -0.40 0.95 16 22 C 0.16 3.07 5.37 -4.04 -0.02 3.05 16 23 N -0.73 -17.42 5.46 -59.90 -0.33 -17.75 16 24 C -0.23 -6.27 9.99 -15.06 -0.15 -6.43 16 25 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 26 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 27 N -0.94 -26.53 13.06 55.49 0.72 -25.81 16 28 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.03 7.56 -51.93 -0.39 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.16 1.58 7.61 -52.48 -0.40 1.18 16 38 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.42 1.46 9.06 45.56 0.41 1.87 16 40 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 41 H 0.12 1.99 5.32 -51.93 -0.28 1.72 16 42 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 44 H 0.38 9.57 7.56 -40.82 -0.31 9.26 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -33.14 376.85 -9.67 -42.81 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -4.70 Total: 9.16 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -0.45 Total: -73.83 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.15 Total: -13.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.14 -9.67 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106585602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.486 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds