Wall clock time and date at job start Wed Apr 1 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.30260 * 2 1 4 4 C 1.54388 * 110.34319 * 237.71177 * 2 1 3 5 5 N 1.48141 * 104.62116 * 264.99569 * 4 2 1 6 6 C 1.34778 * 127.84190 * 140.40335 * 5 4 2 7 7 O 1.21556 * 119.99570 * 354.48023 * 6 5 4 8 8 C 1.47849 * 120.00108 * 174.47695 * 6 5 4 9 9 C 1.39718 * 119.43834 * 184.58649 * 8 6 5 10 10 C 1.37002 * 119.59219 * 179.72489 * 9 8 6 11 11 C 1.39888 * 118.36810 * 0.57696 * 10 9 8 12 12 N 1.35425 * 133.68411 * 179.69233 * 11 10 9 13 13 C 1.30932 * 109.56714 * 179.97438 * 12 11 10 14 14 O 1.35184 * 124.99554 * 180.02562 * 13 12 11 15 15 N 1.36388 * 110.00985 * 0.02562 * 13 12 11 16 16 H 0.96993 * 126.32020 * 179.97438 * 15 13 12 17 17 C 1.38260 * 107.35597 * 0.02562 * 15 13 12 18 18 N 1.31760 * 133.71067 * 179.97438 * 17 15 13 19 19 C 1.48322 * 104.39168 * 320.47310 * 5 4 2 20 20 C 1.54293 * 110.34245 * 122.17541 * 2 1 3 21 21 H 1.08994 * 110.33975 * 359.89866 * 20 2 1 22 22 C 1.52995 * 110.34079 * 237.73957 * 20 2 1 23 23 N 1.46504 * 109.46998 * 176.47193 * 22 20 2 24 24 C 1.36938 * 119.99740 * 180.27289 * 23 22 20 25 25 H 1.08001 * 120.00446 * 359.73762 * 24 23 22 26 26 C 1.38819 * 119.99543 * 179.72765 * 24 23 22 27 27 N 1.31616 * 120.00100 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99562 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47158 * 90.00071 * 28 26 24 30 30 H 1.48504 * 109.46517 * 210.00018 * 28 26 24 31 31 H 1.48498 * 109.47170 * 329.99564 * 28 26 24 32 32 H 1.08998 * 109.47100 * 297.82375 * 1 2 3 33 33 H 1.08992 * 109.47187 * 57.82390 * 1 2 3 34 34 H 1.08998 * 109.46849 * 177.82389 * 1 2 3 35 35 H 1.09002 * 110.40668 * 23.78488 * 4 2 1 36 36 H 1.09002 * 110.40871 * 146.09279 * 4 2 1 37 37 H 1.08006 * 120.19937 * 0.02562 * 9 8 6 38 38 H 1.07997 * 120.81308 * 180.24658 * 10 9 8 39 39 H 0.96698 * 114.00096 * 89.97217 * 14 13 12 40 40 H 1.08996 * 110.38171 * 280.73416 * 19 5 4 41 41 H 1.09003 * 110.50539 * 158.24851 * 19 5 4 42 42 H 1.09010 * 109.47091 * 56.47626 * 22 20 2 43 43 H 1.08995 * 109.47523 * 296.47748 * 22 20 2 44 44 H 0.96999 * 119.99962 * 0.02562 * 23 22 20 45 45 H 0.96998 * 120.00274 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1445 -0.7206 6 6 2.0773 -3.3119 -1.3513 7 8 1.5129 -3.3174 -2.4279 8 6 2.5042 -4.5856 -0.7338 9 6 2.3402 -5.7800 -1.4399 10 6 2.7399 -6.9614 -0.8730 11 6 3.2925 -6.9288 0.4117 12 7 3.7730 -7.8797 1.2477 13 6 4.1850 -7.3203 2.3575 14 8 4.7226 -7.9825 3.4063 15 7 3.9921 -5.9714 2.2998 16 1 4.2125 -5.3294 2.9926 17 6 3.4234 -5.6882 1.0718 18 7 3.0297 -4.5759 0.4855 19 6 2.8797 -1.9432 0.6356 20 6 2.0664 -0.7704 1.2245 21 1 1.2399 -1.1472 1.8269 22 6 2.9692 0.1326 2.0673 23 7 3.3995 -0.5899 3.2669 24 6 4.2152 0.0236 4.1799 25 1 4.5448 1.0385 4.0135 26 6 4.6183 -0.6591 5.3194 27 7 4.2170 -1.8961 5.5220 28 14 5.7305 0.1780 6.5652 29 1 4.9004 0.8768 7.5789 30 1 6.5774 -0.8410 7.2358 31 1 6.5978 1.1634 5.8710 32 1 -0.3633 0.4797 0.9088 33 1 -0.3633 0.5472 -0.8698 34 1 -0.3633 -1.0269 -0.0390 35 1 1.3223 -0.7889 -2.0198 36 1 2.9939 -0.3244 -1.5803 37 1 1.9055 -5.7713 -2.4286 38 1 2.6260 -7.8956 -1.4027 39 1 5.6841 -8.0753 3.3619 40 1 3.9353 -1.6792 0.5713 41 1 2.7473 -2.8395 1.2415 42 1 2.4180 1.0265 2.3596 43 1 3.8433 0.4197 1.4829 44 1 3.1037 -1.5015 3.4163 45 1 4.4983 -2.3730 6.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106585602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:13 Heat of formation + Delta-G solvation = 17.115208 kcal Electronic energy + Delta-G solvation = -30450.416017 eV Core-core repulsion = 26276.082543 eV Total energy + Delta-G solvation = -4174.333474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.55267 -41.43013 -39.91918 -38.99770 -37.86003 -36.38340 -35.03198 -34.06909 -33.13033 -32.41192 -30.79949 -30.51889 -27.71797 -27.05804 -25.57263 -24.82856 -24.35315 -22.90181 -22.60546 -21.30871 -20.84933 -20.37391 -19.09680 -19.05281 -18.55794 -18.30370 -17.32825 -17.18602 -16.70711 -16.50696 -16.17403 -15.83677 -15.56358 -15.28776 -15.17867 -14.86226 -14.62705 -14.43028 -14.19761 -14.07420 -13.68750 -13.36991 -13.26955 -13.21820 -13.05410 -12.87218 -12.69503 -12.47471 -12.45617 -12.22383 -12.12349 -11.95739 -11.71627 -11.53410 -11.42488 -11.32748 -10.92072 -10.22617 -10.14525 -9.84646 -9.55534 -8.95594 -7.92686 -5.19827 -0.79483 0.04073 0.94433 1.17240 1.48301 1.49517 1.57004 1.72635 1.81901 2.39708 2.57053 2.68883 2.99122 3.22017 3.41148 3.54507 3.61289 3.74577 3.75046 3.89296 3.92873 4.22442 4.30471 4.39244 4.43778 4.49507 4.54885 4.66774 4.73238 4.79991 4.88884 4.89947 4.93538 4.98916 5.05629 5.14649 5.25723 5.27418 5.29793 5.40173 5.51868 5.55404 5.61856 6.29617 6.31410 6.35726 6.40573 6.55886 6.96723 7.36987 8.11740 8.36289 9.30543 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007122 B = 0.004601 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.447628 B = 6084.487224 C = 9719.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.106 0.894 4 C 0.106 3.894 5 N -0.601 5.601 6 C 0.591 3.409 7 O -0.557 6.557 8 C 0.099 3.901 9 C -0.112 4.112 10 C -0.018 4.018 11 C 0.029 3.971 12 N -0.502 5.502 13 C 0.492 3.508 14 O -0.436 6.436 15 N -0.581 5.581 16 H 0.439 0.561 17 C 0.225 3.775 18 N -0.453 5.453 19 C 0.113 3.887 20 C -0.097 4.097 21 H 0.066 0.934 22 C 0.165 3.835 23 N -0.742 5.742 24 C -0.242 4.242 25 H 0.074 0.926 26 C -0.068 4.068 27 N -0.964 5.964 28 Si 0.966 3.034 29 H -0.291 1.291 30 H -0.296 1.296 31 H -0.272 1.272 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.440 0.560 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -7.649 -13.546 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.124 0.876 4 C -0.015 4.015 5 N -0.332 5.332 6 C 0.379 3.621 7 O -0.436 6.436 8 C -0.048 4.048 9 C -0.136 4.136 10 C -0.045 4.045 11 C -0.093 4.093 12 N -0.235 5.235 13 C 0.187 3.813 14 O -0.242 6.242 15 N -0.208 5.208 16 H 0.281 0.719 17 C -0.014 4.014 18 N -0.169 5.169 19 C -0.009 4.009 20 C -0.116 4.116 21 H 0.085 0.915 22 C 0.038 3.962 23 N -0.385 5.385 24 C -0.374 4.374 25 H 0.092 0.908 26 C -0.261 4.261 27 N -0.615 5.615 28 Si 0.796 3.204 29 H -0.218 1.218 30 H -0.222 1.222 31 H -0.197 1.197 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.305 0.695 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.206 0.794 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.341 -7.801 -13.538 15.800 hybrid contribution 1.200 0.498 1.627 2.083 sum -1.141 -7.303 -11.911 14.018 Atomic orbital electron populations 1.21780 0.93584 1.01256 1.02661 1.22108 0.96897 0.99944 0.92238 0.87615 1.22627 1.01842 0.79880 0.97155 1.48909 1.60619 1.05631 1.18017 1.17424 0.78720 0.82120 0.83811 1.90761 1.43986 1.86709 1.22180 1.20912 0.99316 0.94802 0.89779 1.21707 0.99518 0.89912 1.02453 1.20772 0.93201 1.00344 0.90222 1.20052 1.03156 0.89012 0.97107 1.70678 1.21399 1.30561 1.00874 1.20377 0.95285 0.77958 0.87680 1.84800 1.30647 1.72072 1.36649 1.43311 1.52670 1.09545 1.15308 0.71911 1.18790 1.02133 0.92106 0.88349 1.66391 1.11412 1.28648 1.10425 1.22773 0.96345 0.99873 0.81949 1.22277 0.97695 0.95497 0.96170 0.91508 1.20847 0.94893 0.93644 0.86788 1.42531 1.58608 1.15168 1.22156 1.19607 1.20758 0.97351 0.99652 0.90838 1.25408 1.03094 0.97115 1.00484 1.69783 1.51070 1.11714 1.28914 0.85253 0.78559 0.77291 0.79317 1.21840 1.22221 1.19717 0.92261 0.90585 0.94202 0.89229 0.89544 0.80551 0.79752 0.69537 0.92127 0.88034 0.95634 0.95577 0.79409 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.90 71.98 0.64 -2.31 16 2 C -0.09 -2.18 3.31 -9.88 -0.03 -2.22 16 3 H 0.11 2.19 7.71 -2.39 -0.02 2.17 16 4 C 0.11 2.56 6.62 86.54 0.57 3.13 16 5 N -0.60 -17.59 3.32 -810.89 -2.69 -20.28 16 6 C 0.59 18.12 7.88 86.79 0.68 18.80 16 7 O -0.56 -18.35 16.55 -3.89 -0.06 -18.41 16 8 C 0.10 2.84 6.73 41.90 0.28 3.13 16 9 C -0.11 -2.51 9.55 22.34 0.21 -2.29 16 10 C -0.02 -0.38 10.16 22.38 0.23 -0.15 16 11 C 0.03 0.77 7.24 39.70 0.29 1.06 16 12 N -0.50 -13.17 11.30 -306.03 -3.46 -16.62 16 13 C 0.49 11.72 9.39 179.70 1.69 13.41 16 14 O -0.44 -7.57 13.62 -84.64 -1.15 -8.72 16 15 N -0.58 -15.44 6.25 -307.03 -1.92 -17.35 16 16 H 0.44 11.66 8.96 -92.71 -0.83 10.83 16 17 C 0.22 6.62 8.46 134.00 1.13 7.76 16 18 N -0.45 -14.08 6.65 -181.67 -1.21 -15.29 16 19 C 0.11 3.64 5.72 86.50 0.49 4.13 16 20 C -0.10 -3.00 2.76 -9.89 -0.03 -3.03 16 21 H 0.07 2.27 7.71 -2.39 -0.02 2.25 16 22 C 0.16 6.15 5.37 86.38 0.46 6.61 16 23 N -0.74 -35.71 5.46 -343.44 -1.87 -37.59 16 24 C -0.24 -12.92 9.99 84.04 0.84 -12.08 16 25 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 26 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 27 N -0.96 -55.48 13.06 21.65 0.28 -55.20 16 28 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 29 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 30 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 31 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.09 2.07 7.56 -2.39 -0.02 2.05 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.18 3.20 7.61 -2.91 -0.02 3.18 16 38 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.44 2.50 9.06 -74.06 -0.67 1.83 16 40 H 0.06 2.09 7.78 -2.39 -0.02 2.07 16 41 H 0.10 3.64 5.32 -2.39 -0.01 3.63 16 42 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.03 0.97 8.02 -2.39 -0.02 0.95 16 44 H 0.37 19.20 7.56 -92.71 -0.70 18.50 16 45 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -70.72 376.85 -3.25 -73.96 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -1.12 Total: 36.41 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 7.93 Total: 32.67 kcal Atomic # 7 Polarization: -151.47 SS G_CDS: -10.87 Total: -162.33 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.22 Total: -27.14 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.72 -3.25 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106585602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.080 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds