Wall clock time and date at job start Wed Apr 1 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91663 * 2 1 4 4 C 1.55124 * 111.16456 * 236.07860 * 2 1 3 5 5 N 1.47425 * 104.94211 * 205.13429 * 4 2 1 6 6 C 1.34777 * 125.64659 * 204.03881 * 5 4 2 7 7 O 1.21599 * 120.00070 * 355.00037 * 6 5 4 8 8 C 1.47547 * 119.99883 * 175.00627 * 6 5 4 9 9 C 1.46395 * 120.25230 * 7.42498 * 8 6 5 10 10 C 1.35597 * 119.10407 * 179.67508 * 9 8 6 11 11 C 1.41174 * 119.48106 * 0.64832 * 10 9 8 12 12 N 1.32057 * 132.79219 * 179.65801 * 11 10 9 13 13 N 1.28598 * 109.71964 * 179.97438 * 12 11 10 14 14 C 1.31087 * 110.35093 * 0.02562 * 13 12 11 15 15 O 1.35692 * 126.33690 * 179.97438 * 14 13 12 16 16 N 1.36531 * 107.33258 * 359.97438 * 14 13 12 17 17 C 1.36021 * 133.10477 * 180.02562 * 16 14 13 18 18 C 1.47024 * 108.70594 * 23.99759 * 5 4 2 19 19 C 1.54326 * 107.26891 * 358.94416 * 18 5 4 20 20 H 1.09003 * 110.72028 * 96.34972 * 19 18 5 21 21 C 1.52999 * 110.71838 * 219.44420 * 19 18 5 22 22 N 1.46501 * 109.47107 * 291.15862 * 21 19 18 23 23 C 1.36936 * 120.00212 * 180.27777 * 22 21 19 24 24 H 1.08007 * 119.99799 * 359.72122 * 23 22 21 25 25 C 1.38805 * 120.00293 * 179.72301 * 23 22 21 26 26 N 1.31616 * 119.99878 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00228 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47234 * 59.99675 * 27 25 23 29 29 H 1.48501 * 109.47206 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46570 * 299.99650 * 27 25 23 31 31 H 1.09001 * 109.47151 * 296.09733 * 1 2 3 32 32 H 1.09008 * 109.46807 * 56.09500 * 1 2 3 33 33 H 1.08993 * 109.47002 * 176.09290 * 1 2 3 34 34 H 1.08994 * 110.42385 * 86.19809 * 4 2 1 35 35 H 1.09001 * 110.29609 * 323.99486 * 4 2 1 36 36 H 1.08003 * 120.45039 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.26032 * 180.28449 * 10 9 8 38 38 H 0.96694 * 113.99884 * 270.02837 * 15 14 13 39 39 H 1.07997 * 119.79789 * 359.97438 * 17 16 14 40 40 H 1.08997 * 109.88511 * 239.52670 * 18 5 4 41 41 H 1.09001 * 110.00872 * 118.43294 * 18 5 4 42 42 H 1.09002 * 109.47173 * 171.15609 * 21 19 18 43 43 H 1.08996 * 109.47299 * 51.15867 * 21 19 18 44 44 H 0.96998 * 120.00124 * 359.97438 * 22 21 19 45 45 H 0.97003 * 119.99959 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8073 -1.2004 5 7 3.4299 -1.2473 -0.7706 6 6 4.4516 -1.5675 -1.5891 7 8 4.2813 -1.5926 -2.7929 8 6 5.7767 -1.8876 -1.0246 9 6 5.9495 -2.0184 0.4232 10 6 7.1761 -2.3198 0.9164 11 6 8.2604 -2.4870 0.0279 12 7 9.5368 -2.7701 0.2134 13 7 10.1398 -2.8188 -0.9213 14 6 9.2983 -2.5723 -1.8957 15 8 9.5892 -2.5410 -3.2207 16 7 8.0749 -2.3528 -1.3308 17 6 6.8518 -2.0581 -1.8478 18 6 3.4672 -1.2781 0.6989 19 6 2.0861 -0.8080 1.2022 20 1 1.4451 -1.6615 1.4229 21 6 2.2350 0.0875 2.4338 22 7 2.7030 -0.7145 3.5670 23 6 2.9047 -0.1247 4.7862 24 1 2.7230 0.9326 4.9114 25 6 3.3426 -0.8857 5.8614 26 7 3.5635 -2.1742 5.7090 27 14 3.6170 -0.0813 7.5249 28 1 2.3437 0.5151 8.0024 29 1 4.0816 -1.1024 8.4979 30 1 4.6447 0.9830 7.3964 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5733 -0.8530 33 1 -0.3633 -1.0252 -0.0700 34 1 2.1642 -0.1732 -2.0838 35 1 1.4553 -1.6694 -1.4054 36 1 5.1103 -1.8816 1.0892 37 1 7.3237 -2.4252 1.9811 38 1 9.8565 -1.6699 -3.5442 39 1 6.7308 -1.9576 -2.9163 40 1 4.2434 -0.6057 1.0642 41 1 3.6625 -2.2928 1.0458 42 1 1.2706 0.5331 2.6777 43 1 2.9571 0.8765 2.2242 44 1 2.8658 -1.6641 3.4547 45 1 3.8691 -2.7061 6.4604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106756451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:29 Heat of formation + Delta-G solvation = 56.169230 kcal Electronic energy + Delta-G solvation = -30128.282139 eV Core-core repulsion = 25955.642175 eV Total energy + Delta-G solvation = -4172.639964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.81436 -41.64975 -39.51355 -38.93919 -38.58811 -36.37914 -35.25468 -34.15821 -33.17672 -32.37598 -30.72609 -30.16207 -28.02974 -27.23961 -25.60034 -25.16109 -24.54232 -23.74975 -22.57109 -21.23121 -21.17297 -20.44189 -19.64124 -19.00322 -18.48033 -18.02891 -17.52598 -17.25287 -16.80315 -16.57718 -16.07468 -15.89538 -15.75050 -15.45124 -15.27503 -14.99879 -14.82530 -14.23052 -13.97051 -13.74543 -13.72298 -13.57961 -13.41361 -13.23151 -13.21036 -12.93235 -12.72132 -12.68365 -12.45018 -12.31255 -12.14702 -11.84720 -11.72965 -11.66565 -11.49499 -11.31769 -11.26079 -10.84413 -10.83412 -9.85369 -9.35211 -8.89511 -7.87235 -5.13750 -0.82120 -0.39709 0.55362 1.01579 1.54499 1.55063 1.59635 1.60772 1.73082 2.20309 2.46716 2.62441 2.88667 2.99884 3.27133 3.35679 3.45924 3.52009 3.56990 3.60756 3.78534 4.04656 4.18173 4.27184 4.32721 4.42918 4.52737 4.57037 4.57664 4.65802 4.73684 4.79721 4.83562 4.86401 4.89511 5.03110 5.06726 5.11329 5.22834 5.28993 5.34092 5.40408 5.55505 5.60935 6.21369 6.24881 6.35357 6.81865 7.11407 7.44151 8.18856 8.42290 9.35027 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.003506 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.408228 B = 7985.516031 C =10933.207037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.601 5.601 6 C 0.590 3.410 7 O -0.564 6.564 8 C -0.152 4.152 9 C -0.086 4.086 10 C -0.086 4.086 11 C 0.214 3.786 12 N -0.305 5.305 13 N -0.270 5.270 14 C 0.332 3.668 15 O -0.423 6.423 16 N -0.407 5.407 17 C 0.147 3.853 18 C 0.093 3.907 19 C -0.095 4.095 20 H 0.089 0.911 21 C 0.164 3.836 22 N -0.741 5.741 23 C -0.240 4.240 24 H 0.073 0.927 25 C -0.065 4.065 26 N -0.961 5.961 27 Si 0.959 3.041 28 H -0.282 1.282 29 H -0.300 1.300 30 H -0.281 1.281 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.177 0.823 38 H 0.432 0.568 39 H 0.204 0.796 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.377 0.623 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 3.875 -18.800 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.010 4.010 5 N -0.332 5.332 6 C 0.379 3.621 7 O -0.445 6.445 8 C -0.159 4.159 9 C -0.109 4.109 10 C -0.107 4.107 11 C -0.036 4.036 12 N -0.151 5.151 13 N -0.119 5.119 14 C 0.031 3.969 15 O -0.226 6.226 16 N -0.099 5.099 17 C 0.023 3.977 18 C -0.028 4.028 19 C -0.114 4.114 20 H 0.107 0.893 21 C 0.038 3.962 22 N -0.384 5.384 23 C -0.372 4.372 24 H 0.091 0.909 25 C -0.258 4.258 26 N -0.612 5.612 27 Si 0.789 3.211 28 H -0.209 1.209 29 H -0.226 1.226 30 H -0.207 1.207 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.209 0.791 37 H 0.195 0.805 38 H 0.294 0.706 39 H 0.221 0.779 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.210 0.790 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.232 3.055 -18.874 19.159 hybrid contribution -0.485 0.561 0.465 0.875 sum 0.747 3.615 -18.409 18.775 Atomic orbital electron populations 1.21676 0.92167 1.02801 1.02801 1.22369 0.97383 0.99121 0.91735 0.89035 1.22541 0.81367 0.98979 0.98092 1.48288 1.12635 1.64939 1.07325 1.17194 0.82794 0.77029 0.85079 1.90800 1.83976 1.54976 1.14766 1.20445 0.93528 1.08031 0.93902 1.23918 0.99379 0.93930 0.93664 1.20527 0.88219 1.01521 1.00412 1.22463 0.95957 1.03259 0.81931 1.74913 1.01967 1.22076 1.16158 1.74442 1.24827 1.17938 0.94663 1.21853 0.80128 1.06729 0.88158 1.84990 1.86710 1.39145 1.11776 1.44050 1.09279 1.47048 1.09565 1.21936 0.80418 0.93934 1.01414 1.22743 0.99381 1.02193 0.78529 1.22438 0.95065 0.99264 0.94621 0.89298 1.20772 0.96844 0.92981 0.85643 1.42498 1.80473 1.08727 1.06740 1.19490 1.35851 0.93557 0.88327 0.90941 1.25331 1.03311 0.96195 1.00953 1.69743 1.54032 1.05986 1.31412 0.85436 0.77843 0.77075 0.80726 1.20883 1.22626 1.20714 0.92154 0.90752 0.91942 0.89716 0.90120 0.79051 0.80525 0.70590 0.77945 0.89594 0.89596 0.95502 0.95638 0.79011 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.32 71.98 0.67 -1.33 16 2 C -0.09 -1.50 3.10 -9.33 -0.03 -1.53 16 3 H 0.09 1.56 8.05 -2.38 -0.02 1.54 16 4 C 0.11 2.00 6.37 86.93 0.55 2.56 16 5 N -0.60 -12.78 3.33 -817.01 -2.72 -15.50 16 6 C 0.59 13.91 7.80 86.70 0.68 14.59 16 7 O -0.56 -15.67 16.62 -4.03 -0.07 -15.74 16 8 C -0.15 -3.31 5.98 -19.11 -0.11 -3.42 16 9 C -0.09 -1.89 8.68 23.78 0.21 -1.69 16 10 C -0.09 -2.07 10.09 22.38 0.23 -1.85 16 11 C 0.21 5.88 7.91 134.08 1.06 6.94 16 12 N -0.31 -9.71 12.28 -55.01 -0.68 -10.39 16 13 N -0.27 -8.10 12.19 -173.29 -2.11 -10.21 16 14 C 0.33 7.85 9.38 179.61 1.69 9.54 16 15 O -0.42 -6.64 13.65 -90.11 -1.23 -7.87 16 16 N -0.41 -9.56 2.95 -465.99 -1.38 -10.94 16 17 C 0.15 2.97 10.54 83.63 0.88 3.85 16 18 C 0.09 2.06 4.25 86.73 0.37 2.43 16 19 C -0.09 -2.17 2.45 -9.61 -0.02 -2.19 16 20 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 21 C 0.16 5.13 5.59 86.38 0.48 5.61 16 22 N -0.74 -31.57 5.48 -343.45 -1.88 -33.45 16 23 C -0.24 -11.99 9.99 84.03 0.84 -11.15 16 24 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 25 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 26 N -0.96 -53.78 13.06 21.65 0.28 -53.50 16 27 Si 0.96 43.32 29.55 68.60 2.03 45.35 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 30 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 34 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 35 H 0.08 1.36 7.99 -2.39 -0.02 1.34 16 36 H 0.19 4.20 2.99 -3.66 -0.01 4.19 16 37 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.43 1.69 9.06 -74.06 -0.67 1.01 16 39 H 0.20 3.24 7.60 -2.91 -0.02 3.22 16 40 H 0.09 2.01 6.19 -2.39 -0.01 1.99 16 41 H 0.09 1.92 6.75 -2.39 -0.02 1.90 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.03 0.80 8.00 -2.39 -0.02 0.78 16 44 H 0.38 16.89 7.60 -92.71 -0.70 16.18 16 45 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -69.48 374.40 -0.11 -69.59 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.31 Total: 23.25 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.95 Total: 19.40 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -8.48 Total: -133.98 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.30 Total: -23.60 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.48 -0.11 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106756451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.755 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds