Wall clock time and date at job start Wed Apr 1 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.65581 * 2 1 4 4 C 1.54589 * 110.83671 * 236.74780 * 2 1 3 5 5 N 1.48115 * 103.42643 * 204.44807 * 4 2 1 6 6 C 1.34780 * 127.03460 * 219.28736 * 5 4 2 7 7 O 1.21639 * 120.00071 * 5.37619 * 6 5 4 8 8 C 1.47207 * 119.99642 * 185.37808 * 6 5 4 9 9 C 1.38841 * 120.90588 * 25.55308 * 8 6 5 10 10 C 1.39933 * 119.43139 * 180.02562 * 9 8 6 11 11 C 1.35015 * 121.26746 * 359.97438 * 10 9 8 12 12 N 1.36254 * 121.58568 * 359.97438 * 11 10 9 13 13 C 1.36370 * 133.88008 * 180.02562 * 12 11 10 14 14 O 1.35704 * 126.33431 * 359.97438 * 13 12 11 15 15 N 1.31102 * 107.32946 * 180.26285 * 13 12 11 16 16 N 1.28702 * 110.31330 * 359.55717 * 15 13 12 17 17 C 1.31475 * 109.66565 * 0.45505 * 16 15 13 18 18 C 1.47482 * 105.93027 * 39.02230 * 5 4 2 19 19 C 1.53997 * 107.08614 * 334.78125 * 18 5 4 20 20 H 1.09006 * 110.33187 * 120.19514 * 19 18 5 21 21 C 1.52995 * 110.32884 * 242.41179 * 19 18 5 22 22 N 1.46500 * 109.47568 * 293.54432 * 21 19 18 23 23 C 1.36934 * 120.00512 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99873 * 0.02562 * 23 22 21 25 25 C 1.38813 * 119.99859 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00178 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99600 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47216 * 90.00612 * 27 25 23 29 29 H 1.48503 * 109.47094 * 210.00221 * 27 25 23 30 30 H 1.48491 * 109.47386 * 330.00194 * 27 25 23 31 31 H 1.09006 * 109.47445 * 296.81941 * 1 2 3 32 32 H 1.09008 * 109.47187 * 56.81375 * 1 2 3 33 33 H 1.09000 * 109.47226 * 176.81404 * 1 2 3 34 34 H 1.09000 * 110.61819 * 85.93219 * 4 2 1 35 35 H 1.09004 * 110.54683 * 322.92816 * 4 2 1 36 36 H 1.08002 * 120.28241 * 0.04261 * 9 8 6 37 37 H 1.08003 * 119.36235 * 180.02562 * 10 9 8 38 38 H 1.08007 * 119.20753 * 180.02562 * 11 10 9 39 39 H 0.96700 * 113.99999 * 89.99882 * 14 13 12 40 40 H 1.09002 * 109.91374 * 94.13859 * 18 5 4 41 41 H 1.09000 * 109.91581 * 215.22143 * 18 5 4 42 42 H 1.09000 * 109.47354 * 53.54382 * 21 19 18 43 43 H 1.09001 * 109.47897 * 173.54350 * 21 19 18 44 44 H 0.97009 * 119.99213 * 0.02562 * 22 21 19 45 45 H 0.97003 * 119.99587 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0798 -0.7922 -1.2082 5 7 3.4279 -1.2113 -0.7600 6 6 4.5539 -1.2498 -1.4998 7 8 4.5475 -0.8251 -2.6396 8 6 5.7912 -1.8060 -0.9283 9 6 5.7459 -2.7405 0.0975 10 6 6.9412 -3.2485 0.6182 11 6 8.1393 -2.8478 0.1420 12 7 8.2381 -1.9342 -0.8641 13 6 9.2868 -1.3635 -1.5231 14 8 10.6035 -1.6036 -1.2995 15 7 8.7875 -0.5353 -2.4084 16 7 7.5015 -0.5512 -2.3597 17 6 7.1044 -1.3890 -1.4275 18 6 3.2874 -1.5716 0.6633 19 6 2.0775 -0.7915 1.2102 20 1 1.3208 -1.4805 1.5856 21 6 2.5198 0.1680 2.3167 22 7 2.9884 -0.6014 3.4719 23 6 3.4375 0.0481 4.5907 24 1 3.4458 1.1276 4.6216 25 6 3.8810 -0.6811 5.6855 26 7 3.8704 -1.9967 5.6480 27 14 4.4929 0.2049 7.2119 28 1 3.3564 0.4351 8.1397 29 1 5.5224 -0.6255 7.8870 30 1 5.0862 1.5093 6.8228 31 1 -0.3634 0.4637 0.9172 32 1 -0.3634 0.5625 -0.8601 33 1 -0.3634 -1.0261 -0.0571 34 1 2.1487 -0.1520 -2.0877 35 1 1.4548 -1.6617 -1.4121 36 1 4.7961 -3.0727 0.4900 37 1 6.9046 -3.9757 1.4159 38 1 9.0412 -3.2620 0.5682 39 1 10.9670 -2.3264 -1.8292 40 1 3.1124 -2.6432 0.7594 41 1 4.1896 -1.2927 1.2077 42 1 3.3285 0.7993 1.9484 43 1 1.6777 0.7930 2.6139 44 1 2.9813 -1.5710 3.4440 45 1 4.1807 -2.5062 6.4129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106871954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:46 Heat of formation + Delta-G solvation = 70.361560 kcal Electronic energy + Delta-G solvation = -30462.724384 eV Core-core repulsion = 26290.699846 eV Total energy + Delta-G solvation = -4172.024539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.68499 -40.30069 -38.40607 -37.92339 -37.75831 -34.67927 -34.13383 -32.80160 -31.53806 -31.27772 -29.28146 -29.08410 -26.73624 -25.79450 -24.76051 -23.63925 -23.34419 -22.87972 -21.28785 -20.31669 -20.00235 -18.99666 -18.45219 -17.60719 -17.24147 -16.99093 -16.59832 -15.86079 -15.74797 -15.38245 -14.97006 -14.86670 -14.51284 -14.06661 -13.68901 -13.52375 -13.22134 -13.09303 -12.87821 -12.78944 -12.74070 -12.60588 -12.38192 -12.10124 -11.90652 -11.80458 -11.44910 -11.20678 -11.14420 -10.93055 -10.69910 -10.61220 -10.51456 -10.39784 -10.08015 -9.94474 -9.79909 -9.74113 -8.97131 -8.68256 -8.33155 -7.02761 -5.87029 -3.15197 -0.01451 0.77983 1.58726 2.32937 2.48870 2.80372 3.30460 3.37206 3.38373 3.43558 3.44492 3.77937 3.99473 4.30930 4.36882 4.48684 4.54036 4.67932 4.71039 4.87941 5.14691 5.16016 5.26513 5.35702 5.43402 5.47827 5.50696 5.55839 5.59383 5.60892 5.69562 5.75438 5.81209 5.87497 5.94153 6.06389 6.14472 6.17422 6.25220 6.25626 6.40538 6.65207 6.77643 6.93986 7.46432 7.62920 8.10572 8.29522 8.32178 9.44280 9.99254 10.34654 11.35709 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.003965 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.129201 B = 7060.534635 C = 9678.449548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.614 5.614 6 C 0.586 3.414 7 O -0.513 6.513 8 C -0.089 4.089 9 C -0.037 4.037 10 C -0.136 4.136 11 C 0.087 3.913 12 N -0.405 5.405 13 C 0.312 3.688 14 O -0.427 6.427 15 N -0.240 5.240 16 N -0.249 5.249 17 C 0.238 3.762 18 C 0.095 3.905 19 C -0.102 4.102 20 H 0.090 0.910 21 C 0.160 3.840 22 N -0.732 5.732 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.934 5.934 27 Si 0.904 3.096 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -7.230 -12.575 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.348 5.348 6 C 0.374 3.626 7 O -0.389 6.389 8 C -0.096 4.096 9 C -0.061 4.061 10 C -0.157 4.157 11 C -0.035 4.035 12 N -0.098 5.098 13 C 0.012 3.988 14 O -0.225 6.225 15 N -0.090 5.090 16 N -0.095 5.095 17 C -0.015 4.015 18 C -0.027 4.027 19 C -0.121 4.121 20 H 0.108 0.892 21 C 0.033 3.967 22 N -0.377 5.377 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.583 5.583 27 Si 0.735 3.265 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.191 0.809 39 H 0.260 0.740 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.216 0.784 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.262 -5.312 -13.954 15.283 hybrid contribution 0.804 -1.327 2.002 2.532 sum 4.066 -6.639 -11.952 14.264 Atomic orbital electron populations 1.21722 0.93710 1.02024 1.02209 1.22247 0.96157 0.99931 0.93767 0.89651 1.22507 0.81605 0.98762 0.98070 1.48613 1.08149 1.66019 1.12015 1.16998 0.81278 0.79192 0.85149 1.90874 1.84013 1.46374 1.17662 1.19932 0.88982 1.01396 0.99308 1.22354 1.00767 0.92209 0.90788 1.20929 0.90096 1.02724 1.01959 1.21783 1.01349 0.91016 0.89342 1.44045 1.09057 1.30010 1.26686 1.21737 0.82247 0.98760 0.96028 1.85032 1.13511 1.57513 1.66462 1.74674 1.02905 1.15897 1.15539 1.74960 1.01398 1.17107 1.15993 1.22517 0.86760 0.97135 0.95059 1.22616 1.01029 0.98899 0.80180 1.22391 0.96316 0.98008 0.95420 0.89206 1.20729 0.96376 0.92871 0.86757 1.42348 1.77093 1.05585 1.12632 1.19221 1.34329 0.91302 0.92132 0.91239 1.24680 1.02195 0.95464 0.98325 1.69637 1.53573 1.04116 1.30953 0.86232 0.78259 0.78561 0.83422 1.21658 1.21775 1.20788 0.91758 0.92559 0.92400 0.89661 0.90718 0.81669 0.81419 0.80890 0.73999 0.91123 0.89013 0.96152 0.95759 0.78357 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.16 37.16 0.34 -0.99 16 2 C -0.10 -1.18 3.19 -88.94 -0.28 -1.46 16 3 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 4 C 0.11 1.32 6.54 -2.32 -0.02 1.30 16 5 N -0.61 -8.36 3.29 -171.33 -0.56 -8.92 16 6 C 0.59 9.35 7.68 -12.62 -0.10 9.25 16 7 O -0.51 -9.85 16.82 5.24 0.09 -9.76 16 8 C -0.09 -1.29 5.84 -102.69 -0.60 -1.89 16 9 C -0.04 -0.41 8.22 -38.72 -0.32 -0.73 16 10 C -0.14 -1.21 9.91 -40.09 -0.40 -1.61 16 11 C 0.09 0.80 10.93 -16.73 -0.18 0.62 16 12 N -0.41 -5.23 2.97 -62.51 -0.19 -5.42 16 13 C 0.31 4.16 9.41 -88.65 -0.83 3.33 16 14 O -0.43 -4.00 13.65 -18.82 -0.26 -4.26 16 15 N -0.24 -4.04 12.20 29.70 0.36 -3.67 16 16 N -0.25 -4.60 12.02 32.37 0.39 -4.21 16 17 C 0.24 3.81 7.76 -153.91 -1.19 2.61 16 18 C 0.10 1.24 4.43 -2.98 -0.01 1.23 16 19 C -0.10 -1.39 2.65 -89.25 -0.24 -1.63 16 20 H 0.09 1.19 7.85 -51.93 -0.41 0.78 16 21 C 0.16 2.91 5.34 -4.04 -0.02 2.89 16 22 N -0.73 -16.67 5.33 -59.91 -0.32 -16.99 16 23 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.06 13.06 55.49 0.72 -25.33 16 27 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.08 1.05 7.81 -51.93 -0.41 0.65 16 35 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 36 H 0.17 1.59 4.91 -52.49 -0.26 1.33 16 37 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.40 1.38 9.06 45.56 0.41 1.79 16 40 H 0.07 0.77 7.01 -51.93 -0.36 0.41 16 41 H 0.09 1.39 6.27 -51.93 -0.33 1.07 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.38 8.88 7.51 -40.82 -0.31 8.58 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -36.33 375.99 -8.20 -44.53 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.98 Total: 5.80 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -4.10 Total: 6.11 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 0.41 Total: -64.55 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.17 Total: -14.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.33 -8.20 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106871954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.890 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds