Wall clock time and date at job start Wed Apr 1 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.79726 * 2 1 4 4 C 1.54938 * 110.74072 * 236.70897 * 2 1 3 5 5 N 1.48114 * 103.25671 * 279.03797 * 4 2 1 6 6 C 1.34779 * 127.03168 * 140.67283 * 5 4 2 7 7 O 1.21583 * 119.99576 * 176.36566 * 6 5 4 8 8 C 1.47673 * 120.00284 * 356.36441 * 6 5 4 9 9 C 1.39914 * 120.39391 * 214.06658 * 8 6 5 10 10 N 1.31448 * 121.14187 * 179.74794 * 9 8 6 11 11 C 1.32473 * 121.80841 * 0.54312 * 10 9 8 12 12 N 1.37871 * 133.45074 * 179.74875 * 11 10 9 13 13 H 0.96999 * 126.24941 * 359.96382 * 12 11 10 14 14 C 1.36522 * 107.50106 * 179.97438 * 12 11 10 15 15 O 1.35259 * 125.02428 * 180.02562 * 14 12 11 16 16 N 1.30722 * 109.94657 * 0.02562 * 14 12 11 17 17 C 1.35885 * 109.40340 * 359.97438 * 16 14 12 18 18 C 1.39413 * 133.62876 * 180.02562 * 17 16 14 19 19 C 1.47485 * 105.93358 * 320.71175 * 5 4 2 20 20 C 1.53999 * 107.08301 * 25.44230 * 19 5 4 21 21 H 1.09003 * 110.32645 * 239.70129 * 20 19 5 22 22 C 1.53003 * 110.32707 * 117.58968 * 20 19 5 23 23 N 1.46502 * 109.47044 * 66.45199 * 22 20 19 24 24 C 1.36939 * 120.00042 * 180.27987 * 23 22 20 25 25 H 1.08003 * 119.99650 * 359.71935 * 24 23 22 26 26 C 1.38805 * 120.00196 * 179.72697 * 24 23 22 27 27 N 1.31626 * 120.00114 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00250 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47196 * 89.99742 * 28 26 24 30 30 H 1.48499 * 109.47361 * 209.99817 * 28 26 24 31 31 H 1.48500 * 109.46866 * 329.99916 * 28 26 24 32 32 H 1.08995 * 109.47904 * 296.70975 * 1 2 3 33 33 H 1.09000 * 109.47326 * 56.71159 * 1 2 3 34 34 H 1.09002 * 109.47216 * 176.70581 * 1 2 3 35 35 H 1.09003 * 110.66203 * 160.59734 * 4 2 1 36 36 H 1.08998 * 110.80603 * 37.55074 * 4 2 1 37 37 H 1.07995 * 119.42418 * 0.02562 * 9 8 6 38 38 H 0.96700 * 114.00195 * 90.00568 * 15 14 12 39 39 H 1.08004 * 120.97347 * 359.95364 * 18 17 16 40 40 H 1.09004 * 109.91090 * 266.08327 * 19 5 4 41 41 H 1.08995 * 110.07638 * 144.89761 * 19 5 4 42 42 H 1.09003 * 109.46637 * 306.45718 * 22 20 19 43 43 H 1.08991 * 109.47305 * 186.45215 * 22 20 19 44 44 H 0.96996 * 120.00038 * 0.02562 * 23 22 20 45 45 H 0.96993 * 120.00285 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9169 1.0190 0.0000 4 6 2.0786 -0.7953 -1.2112 5 7 1.9871 -2.2038 -0.7622 6 6 1.6221 -3.2695 -1.5022 7 8 1.6546 -4.3848 -1.0191 8 6 1.1828 -3.0827 -2.8996 9 6 0.1930 -3.9064 -3.4466 10 7 -0.2126 -3.7499 -4.6872 11 6 0.3001 -2.8183 -5.4771 12 7 0.0665 -2.4506 -6.7852 13 1 -0.5730 -2.8582 -7.3901 14 6 0.8996 -1.4083 -7.0738 15 8 0.9630 -0.7723 -8.2658 16 7 1.6269 -1.1159 -6.0277 17 6 1.3044 -1.9515 -5.0058 18 6 1.7554 -2.0849 -3.6934 19 6 2.3762 -2.2014 0.6604 20 6 2.0774 -0.7937 1.2087 21 1 2.9906 -0.3321 1.5845 22 6 1.0251 -0.8672 2.3169 23 7 1.5800 -1.5794 3.4707 24 6 0.8135 -1.7739 4.5887 25 1 -0.1985 -1.3983 4.6216 26 6 1.3374 -2.4536 5.6797 27 7 2.5707 -2.9116 5.6396 28 14 0.2920 -2.7183 7.2051 29 1 -0.4514 -3.9976 7.0798 30 1 1.1683 -2.7702 8.4028 31 1 -0.6719 -1.5973 7.3451 32 1 -0.3635 0.4619 0.9179 33 1 -0.3634 0.5640 -0.8590 34 1 -0.3634 -1.0260 -0.0591 35 1 3.1145 -0.5225 -1.4131 36 1 1.4603 -0.6320 -2.0938 37 1 -0.2486 -4.6814 -2.8377 38 1 0.3630 -0.0178 -8.3415 39 1 2.5250 -1.4363 -3.3015 40 1 3.4402 -2.4185 0.7546 41 1 1.7961 -2.9440 1.2082 42 1 0.1473 -1.3989 1.9497 43 1 0.7405 0.1417 2.6153 44 1 2.4891 -1.9164 3.4413 45 1 2.9366 -3.3869 6.4018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569840570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:05 Heat of formation + Delta-G solvation = 13.755432 kcal Electronic energy + Delta-G solvation = -29825.807262 eV Core-core repulsion = 25651.328098 eV Total energy + Delta-G solvation = -4174.479165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.59277 -41.54040 -39.97001 -39.03360 -37.86069 -36.46182 -35.12525 -34.18260 -32.81559 -32.65698 -30.67603 -30.36327 -28.04097 -26.93944 -25.63718 -24.96740 -24.37413 -23.12257 -22.97782 -20.95014 -20.51771 -20.26594 -19.55470 -19.11733 -18.35503 -17.95242 -17.45978 -17.25678 -17.02261 -16.72222 -16.40401 -15.75605 -15.51831 -15.34354 -15.20704 -14.98181 -14.67903 -14.43517 -14.12282 -13.98629 -13.58253 -13.46274 -13.39793 -13.12284 -13.07362 -12.89183 -12.75764 -12.73324 -12.42253 -12.15916 -12.15331 -11.87378 -11.63112 -11.51728 -11.35574 -11.26489 -10.90130 -10.48930 -10.16594 -9.80154 -9.63341 -8.96514 -7.93476 -5.21591 -0.55435 -0.37118 0.95935 1.36522 1.46838 1.49222 1.57080 1.58968 1.79779 2.38232 2.56022 2.57352 3.07266 3.30258 3.39979 3.44678 3.51469 3.62497 3.72235 3.80984 3.87808 4.05273 4.21228 4.30384 4.35718 4.49837 4.55562 4.61508 4.67049 4.69969 4.78636 4.83530 4.86787 4.97587 5.01988 5.06856 5.18957 5.21023 5.30548 5.37855 5.51134 5.56878 5.67038 6.29256 6.34462 6.39931 6.47153 6.64504 6.97724 7.35394 8.12542 8.34511 9.30021 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.002229 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.851677 B =12557.675207 C =13014.182343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.123 0.877 4 C 0.091 3.909 5 N -0.606 5.606 6 C 0.581 3.419 7 O -0.578 6.578 8 C -0.183 4.183 9 C 0.190 3.810 10 N -0.487 5.487 11 C 0.256 3.744 12 N -0.574 5.574 13 H 0.444 0.556 14 C 0.489 3.511 15 O -0.433 6.433 16 N -0.498 5.498 17 C -0.001 4.001 18 C 0.021 3.979 19 C 0.118 3.882 20 C -0.095 4.095 21 H 0.094 0.906 22 C 0.163 3.837 23 N -0.746 5.746 24 C -0.243 4.243 25 H 0.074 0.926 26 C -0.077 4.077 27 N -0.968 5.968 28 Si 0.971 3.029 29 H -0.291 1.291 30 H -0.294 1.294 31 H -0.268 1.268 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.181 0.819 38 H 0.441 0.559 39 H 0.173 0.827 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.014 0.986 43 H 0.030 0.970 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 9.750 -31.453 33.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.141 0.859 4 C -0.030 4.030 5 N -0.337 5.337 6 C 0.370 3.630 7 O -0.458 6.458 8 C -0.191 4.191 9 C 0.022 3.978 10 N -0.200 5.200 11 C 0.019 3.981 12 N -0.203 5.203 13 H 0.288 0.712 14 C 0.183 3.817 15 O -0.239 6.239 16 N -0.231 5.231 17 C -0.121 4.121 18 C -0.007 4.007 19 C -0.005 4.005 20 C -0.115 4.115 21 H 0.113 0.887 22 C 0.037 3.963 23 N -0.389 5.389 24 C -0.374 4.374 25 H 0.092 0.908 26 C -0.269 4.269 27 N -0.619 5.619 28 Si 0.800 3.200 29 H -0.218 1.218 30 H -0.221 1.221 31 H -0.192 1.192 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.198 0.802 38 H 0.306 0.694 39 H 0.191 0.809 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.206 0.794 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.697 8.971 -31.759 33.334 hybrid contribution -0.695 -0.822 1.256 1.655 sum -5.393 8.149 -30.503 32.030 Atomic orbital electron populations 1.21796 0.94580 1.01011 1.02604 1.22301 0.96358 1.00167 0.91833 0.85879 1.23295 1.03367 0.78111 0.98275 1.48728 1.65113 1.08563 1.11317 1.17801 0.76874 0.83100 0.85218 1.90830 1.56222 1.25146 1.73626 1.20365 1.03359 1.01021 0.94339 1.22771 0.91055 0.95340 0.88654 1.66524 1.28874 1.19705 1.04886 1.18963 0.96611 0.95634 0.86913 1.43010 1.36083 1.31253 1.09941 0.71229 1.20240 0.87633 0.86682 0.87112 1.84850 1.65990 1.48849 1.24179 1.70745 1.27018 1.27012 0.98278 1.19402 0.99634 0.97738 0.95284 1.21240 0.96597 0.93668 0.89155 1.21965 0.99668 0.98380 0.80485 1.22247 0.99717 0.94062 0.95440 0.88741 1.20927 0.94564 0.94560 0.86218 1.42629 1.14907 1.67608 1.13727 1.19600 0.96246 1.28447 0.93153 0.90826 1.25557 0.97847 1.01835 1.01694 1.69810 1.15938 1.44411 1.31772 0.85169 0.77698 0.77943 0.79146 1.21828 1.22080 1.19229 0.92374 0.90446 0.94788 0.87392 0.87839 0.80227 0.69397 0.80937 0.91486 0.93578 0.96771 0.95216 0.79445 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.99 71.98 0.57 -2.42 16 2 C -0.09 -1.69 3.60 -9.58 -0.03 -1.73 16 3 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.09 1.56 4.78 86.73 0.41 1.97 16 5 N -0.61 -16.25 3.19 -813.00 -2.59 -18.84 16 6 C 0.58 17.48 7.60 86.74 0.66 18.14 16 7 O -0.58 -22.86 17.18 -3.98 -0.07 -22.93 16 8 C -0.18 -4.25 5.61 -20.01 -0.11 -4.37 16 9 C 0.19 4.33 10.75 85.16 0.92 5.25 16 10 N -0.49 -10.48 10.36 -191.61 -1.99 -12.46 16 11 C 0.26 4.82 8.45 133.83 1.13 5.95 16 12 N -0.57 -6.56 6.23 -307.00 -1.91 -8.47 16 13 H 0.44 2.28 8.96 -92.71 -0.83 1.45 16 14 C 0.49 5.81 9.39 179.72 1.69 7.50 16 15 O -0.43 -2.12 13.63 -85.42 -1.16 -3.29 16 16 N -0.50 -8.92 11.32 -306.41 -3.47 -12.39 16 17 C 0.00 -0.02 7.22 39.42 0.28 0.27 16 18 C 0.02 0.39 7.92 22.92 0.18 0.57 16 19 C 0.12 3.87 6.30 86.53 0.54 4.41 16 20 C -0.10 -2.75 3.00 -9.90 -0.03 -2.78 16 21 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 22 C 0.16 6.31 4.17 86.38 0.36 6.67 16 23 N -0.75 -38.02 5.33 -343.45 -1.83 -39.85 16 24 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 25 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 26 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 27 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 28 Si 0.97 47.18 29.55 68.60 2.03 49.20 16 29 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 30 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 31 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 32 H 0.06 1.34 6.67 -2.39 -0.02 1.32 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 0.87 7.61 -2.39 -0.02 0.85 16 35 H 0.11 1.34 8.06 -2.39 -0.02 1.32 16 36 H 0.10 1.44 5.48 -2.39 -0.01 1.43 16 37 H 0.18 3.96 7.98 -2.91 -0.02 3.93 16 38 H 0.44 -2.96 9.06 -74.06 -0.67 -3.63 16 39 H 0.17 2.55 5.78 -2.91 -0.02 2.53 16 40 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.05 1.95 7.52 -2.39 -0.02 1.94 16 42 H 0.01 0.59 6.85 -2.39 -0.02 0.57 16 43 H 0.03 1.12 7.55 -2.39 -0.02 1.10 16 44 H 0.37 20.23 7.51 -92.71 -0.70 19.53 16 45 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -82.84 371.17 -3.93 -86.78 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -1.11 Total: 19.96 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 7.88 Total: 22.44 kcal Atomic # 7 Polarization: -140.66 SS G_CDS: -11.51 Total: -152.17 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.23 Total: -26.21 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -82.84 -3.93 -86.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569840570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.531 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds