Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.06833 * 2 1 4 4 C 1.53992 * 109.91916 * 238.79540 * 2 1 3 5 5 H 1.09004 * 110.39104 * 358.38611 * 4 2 1 6 6 N 1.46495 * 110.31048 * 120.50698 * 4 2 1 7 7 C 1.34782 * 120.00230 * 202.17154 * 6 4 2 8 8 O 1.21610 * 119.99596 * 359.97438 * 7 6 4 9 9 C 1.47373 * 120.00056 * 179.97438 * 7 6 4 10 10 C 1.38130 * 126.46865 * 0.02920 * 9 7 6 11 11 N 1.34429 * 108.38625 * 179.97438 * 10 9 7 12 12 H 0.97004 * 125.38976 * 180.02562 * 11 10 9 13 13 C 1.37704 * 109.22571 * 359.97438 * 11 10 9 14 14 C 1.43195 * 125.84741 * 179.97438 * 13 11 10 15 15 N 9.60319 * 117.45140 * 284.11694 * 2 1 3 16 16 C 1.36365 * 108.30966 * 359.76953 * 13 11 10 17 17 C 1.54594 * 105.14223 * 239.42353 * 4 2 1 18 18 C 1.54935 * 102.91951 * 338.04240 * 17 4 2 19 19 N 1.47899 * 109.91487 * 121.20806 * 2 1 3 20 20 C 1.46909 * 110.99994 * 265.19246 * 19 2 1 21 21 C 1.50701 * 109.47173 * 176.70431 * 20 19 2 22 22 O 1.21292 * 119.99837 * 353.76086 * 21 20 19 23 23 N 1.34768 * 119.99984 * 173.76091 * 21 20 19 24 24 C 1.37094 * 120.00376 * 179.97438 * 23 21 20 25 25 H 1.08002 * 119.99896 * 0.02562 * 24 23 21 26 26 C 1.38943 * 120.00457 * 180.02562 * 24 23 21 27 27 N 1.31415 * 120.00419 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00334 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47188 * 180.02562 * 28 26 24 30 30 H 1.48507 * 109.46630 * 299.99926 * 28 26 24 31 31 H 1.48498 * 109.47289 * 59.99473 * 28 26 24 32 32 H 1.08998 * 109.47137 * 300.25029 * 1 2 3 33 33 H 1.08999 * 109.47053 * 60.24476 * 1 2 3 34 34 H 1.08995 * 109.47249 * 180.24771 * 1 2 3 35 35 H 0.97006 * 120.00095 * 22.17106 * 6 4 2 36 36 H 1.08003 * 125.80564 * 359.92195 * 10 9 7 37 37 H 1.07998 * 126.48767 * 180.22513 * 16 13 11 38 38 H 1.09000 * 110.72361 * 219.68377 * 17 4 2 39 39 H 1.09003 * 110.72156 * 96.39620 * 17 4 2 40 40 H 1.09000 * 110.66710 * 278.97719 * 18 17 4 41 41 H 1.08998 * 110.80827 * 155.91671 * 18 17 4 42 42 H 1.09002 * 109.46583 * 56.70545 * 20 19 2 43 43 H 1.09001 * 109.47064 * 296.70881 * 20 19 2 44 44 H 0.97006 * 120.00047 * 0.02562 * 23 21 20 45 45 H 0.96992 * 120.00647 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2238 -1.1400 -1.8265 6 7 2.8836 0.1378 -2.0573 7 6 3.0744 -0.1334 -3.3637 8 8 2.5588 -1.1154 -3.8624 9 6 3.9079 0.7601 -4.1876 10 6 4.5538 1.9045 -3.7618 11 7 5.2088 2.4360 -4.8085 12 1 5.7443 3.2445 -4.7843 13 6 5.0001 1.6508 -5.9203 14 6 5.5328 1.8898 -7.2277 15 7 5.9570 2.0785 -8.2645 16 6 4.2029 0.6041 -5.5619 17 6 2.9059 -1.9117 -0.6762 18 6 3.2681 -1.4185 0.7472 19 7 2.0338 -0.7205 1.1893 20 6 2.3212 0.2122 2.2873 21 6 2.7539 -0.5632 3.5049 22 8 2.7088 -1.7753 3.4996 23 7 3.1911 0.0900 4.5996 24 6 3.5844 -0.6153 5.7074 25 1 3.5442 -1.6946 5.7028 26 6 4.0346 0.0582 6.8362 27 7 4.0831 1.3714 6.8422 28 14 4.5711 -0.9030 8.3455 29 1 5.0043 0.0420 9.4059 30 1 3.4336 -1.7175 8.8436 31 1 5.7009 -1.7975 7.9870 32 1 -0.3633 0.5177 0.8877 33 1 -0.3633 0.5100 -0.8922 34 1 -0.3633 -1.0276 0.0044 35 1 3.2952 0.9209 -1.6593 36 1 4.5350 2.3045 -2.7588 37 1 3.8596 -0.1917 -6.2063 38 1 3.8052 -2.0557 -1.2750 39 1 2.3213 -2.8305 -0.6290 40 1 4.1097 -0.7268 0.7121 41 1 3.4904 -2.2598 1.4036 42 1 1.4239 0.7852 2.5214 43 1 3.1185 0.8921 1.9872 44 1 3.2269 1.0594 4.6039 45 1 4.3971 1.8416 7.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707243279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = 16.451549 kcal Electronic energy + Delta-G solvation = -28919.767302 eV Core-core repulsion = 24745.405049 eV Total energy + Delta-G solvation = -4174.362252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04633 -40.13478 -38.74272 -37.57204 -36.95718 -34.45107 -33.82858 -32.14751 -31.40828 -31.24695 -31.00643 -30.00423 -26.55593 -25.49872 -24.12663 -23.36649 -23.05798 -21.24610 -20.63019 -20.44331 -19.48751 -19.16550 -17.90764 -16.90532 -16.74602 -16.21709 -15.88473 -15.68482 -15.20046 -14.99945 -14.69078 -14.60827 -14.52025 -14.19916 -13.92905 -13.74433 -13.61311 -13.46467 -13.43676 -13.13157 -12.93631 -12.80736 -12.48745 -12.22684 -11.90972 -11.70259 -11.46911 -11.31524 -11.20779 -11.12855 -10.81952 -10.70877 -10.45958 -10.23312 -10.14474 -9.73469 -9.50158 -9.19289 -8.93232 -8.48747 -8.04971 -7.95791 -6.43825 -3.84500 0.80165 1.35333 1.72160 2.58692 2.85861 2.92295 3.18518 3.24334 3.24672 3.28778 3.49690 3.88980 3.99750 4.22789 4.29386 4.37327 4.46585 4.68970 4.74072 4.96980 5.13750 5.16253 5.22672 5.29306 5.36929 5.40815 5.49254 5.64236 5.68088 5.81563 5.89324 5.92588 5.93494 5.99261 6.03003 6.16673 6.22792 6.31215 6.40670 6.49024 6.52624 6.90112 7.14449 7.20605 7.34159 7.53163 8.04207 8.08842 8.59950 9.16479 9.52433 10.04582 10.73888 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.001950 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.275557 B =14354.645149 C =15274.295115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.055 0.945 4 C 0.140 3.860 5 H 0.101 0.899 6 N -0.721 5.721 7 C 0.589 3.411 8 O -0.537 6.537 9 C -0.223 4.223 10 C 0.085 3.915 11 N -0.518 5.518 12 H 0.427 0.573 13 C 0.043 3.957 14 C 0.278 3.722 15 N -0.403 5.403 16 C -0.047 4.047 17 C -0.131 4.131 18 C 0.040 3.960 19 N -0.485 5.485 20 C 0.039 3.961 21 C 0.444 3.556 22 O -0.575 6.575 23 N -0.565 5.565 24 C -0.298 4.298 25 H 0.102 0.898 26 C 0.022 3.978 27 N -0.903 5.903 28 Si 0.930 3.070 29 H -0.285 1.285 30 H -0.273 1.273 31 H -0.274 1.274 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.391 0.609 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 7.016 -20.455 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 H 0.073 0.927 4 C 0.035 3.965 5 H 0.119 0.881 6 N -0.372 5.372 7 C 0.377 3.623 8 O -0.414 6.414 9 C -0.233 4.233 10 C -0.057 4.057 11 N -0.112 5.112 12 H 0.266 0.734 13 C -0.068 4.068 14 C -0.037 4.037 15 N -0.079 5.079 16 C -0.075 4.075 17 C -0.170 4.170 18 C -0.087 4.087 19 N -0.210 5.210 20 C -0.093 4.093 21 C 0.229 3.771 22 O -0.459 6.459 23 N -0.202 5.202 24 C -0.428 4.428 25 H 0.120 0.880 26 C -0.179 4.179 27 N -0.545 5.545 28 Si 0.757 3.243 29 H -0.210 1.210 30 H -0.199 1.199 31 H -0.199 1.199 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.205 0.795 37 H 0.179 0.821 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.224 0.776 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.038 5.675 -22.088 22.806 hybrid contribution 1.301 1.726 1.345 2.546 sum 1.263 7.401 -20.743 22.060 Atomic orbital electron populations 1.21714 0.93136 1.02953 1.01307 1.22655 0.97104 0.95970 0.89609 0.92745 1.21901 0.93642 0.90027 0.90914 0.88092 1.46016 1.52542 1.29256 1.09374 1.17294 0.79720 0.84200 0.81101 1.90807 1.49734 1.28341 1.72513 1.19661 1.08853 0.99498 0.95274 1.22543 0.95361 0.94970 0.92860 1.41580 1.39443 1.22926 1.07267 0.73382 1.15167 1.10458 0.98365 0.82803 1.24270 0.93274 0.94429 0.91751 1.81348 1.09126 1.06706 1.10766 1.21116 0.95496 0.96436 0.94437 1.22916 1.00047 0.98289 0.95712 1.23301 0.90382 0.99610 0.95408 1.64499 1.27688 1.24724 1.04045 1.22065 1.00611 0.94156 0.92475 1.19688 0.84281 0.88525 0.84604 1.90517 1.58666 1.13723 1.82974 1.41854 1.57000 1.09235 1.12132 1.19645 1.39429 0.93243 0.90471 0.87969 1.25243 0.97606 0.95704 0.99354 1.69596 1.47458 1.06530 1.30891 0.85929 0.79194 0.78854 0.80319 1.21019 1.19878 1.19939 0.92175 0.92594 0.91443 0.77046 0.79541 0.82089 0.90835 0.89786 0.94538 0.87991 0.89272 0.93611 0.77581 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.32 37.16 0.35 -1.04 16 2 C 0.06 0.62 2.87 -66.65 -0.19 0.43 16 3 H 0.05 0.51 7.23 -51.93 -0.38 0.14 16 4 C 0.14 1.49 2.93 -66.58 -0.20 1.30 16 5 H 0.10 1.18 7.19 -51.93 -0.37 0.81 16 6 N -0.72 -6.00 5.07 -53.58 -0.27 -6.27 16 7 C 0.59 5.84 7.81 -12.54 -0.10 5.74 16 8 O -0.54 -7.51 16.62 5.27 0.09 -7.42 16 9 C -0.22 -1.58 6.13 -105.01 -0.64 -2.22 16 10 C 0.09 0.29 11.43 -16.45 -0.19 0.10 16 11 N -0.52 -1.56 6.02 -10.29 -0.06 -1.62 16 12 H 0.43 0.03 8.96 -40.82 -0.37 -0.33 16 13 C 0.04 0.25 6.90 -83.98 -0.58 -0.33 16 14 C 0.28 2.10 15.88 -22.48 -0.36 1.74 16 15 N -0.40 -4.01 18.54 41.84 0.78 -3.23 16 16 C -0.05 -0.33 10.59 -39.04 -0.41 -0.75 16 17 C -0.13 -1.61 6.78 -24.87 -0.17 -1.78 16 18 C 0.04 0.60 5.79 -1.90 -0.01 0.59 16 19 N -0.48 -7.31 4.62 -224.00 -1.03 -8.34 16 20 C 0.04 0.63 5.18 -4.97 -0.03 0.61 16 21 C 0.44 9.97 7.47 -10.99 -0.08 9.89 16 22 O -0.58 -14.97 14.39 5.55 0.08 -14.89 16 23 N -0.57 -13.76 5.29 -10.97 -0.06 -13.81 16 24 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 25 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 26 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 27 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 28 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 31 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 2.19 7.19 -40.82 -0.29 1.90 16 36 H 0.19 0.01 7.44 -52.48 -0.39 -0.38 16 37 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 41 H 0.10 1.87 6.84 -51.93 -0.36 1.51 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.66 7.99 -51.93 -0.41 0.24 16 44 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -35.17 389.64 -7.53 -42.70 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.77 Total: 8.05 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.85 Total: 6.53 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.07 Total: -56.46 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.17 -7.53 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707243279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.151 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds