Wall clock time and date at job start Wed Apr 1 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.06833 * 2 1 4 4 C 1.53992 * 109.91916 * 238.79540 * 2 1 3 5 5 H 1.09004 * 110.39104 * 358.38611 * 4 2 1 6 6 N 1.46495 * 110.31048 * 120.50698 * 4 2 1 7 7 C 1.34782 * 120.00230 * 202.17154 * 6 4 2 8 8 O 1.21610 * 119.99596 * 359.97438 * 7 6 4 9 9 C 1.47373 * 120.00056 * 179.97438 * 7 6 4 10 10 C 1.38130 * 126.46865 * 0.02920 * 9 7 6 11 11 N 1.34429 * 108.38625 * 179.97438 * 10 9 7 12 12 H 0.97004 * 125.38976 * 180.02562 * 11 10 9 13 13 C 1.37704 * 109.22571 * 359.97438 * 11 10 9 14 14 C 1.43195 * 125.84741 * 179.97438 * 13 11 10 15 15 N 9.60319 * 117.45140 * 284.11694 * 2 1 3 16 16 C 1.36365 * 108.30966 * 359.76953 * 13 11 10 17 17 C 1.54594 * 105.14223 * 239.42353 * 4 2 1 18 18 C 1.54935 * 102.91951 * 338.04240 * 17 4 2 19 19 N 1.47899 * 109.91487 * 121.20806 * 2 1 3 20 20 C 1.46909 * 110.99994 * 265.19246 * 19 2 1 21 21 C 1.50701 * 109.47173 * 176.70431 * 20 19 2 22 22 O 1.21292 * 119.99837 * 353.76086 * 21 20 19 23 23 N 1.34768 * 119.99984 * 173.76091 * 21 20 19 24 24 C 1.37094 * 120.00376 * 179.97438 * 23 21 20 25 25 H 1.08002 * 119.99896 * 0.02562 * 24 23 21 26 26 C 1.38943 * 120.00457 * 180.02562 * 24 23 21 27 27 N 1.31415 * 120.00419 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00334 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47188 * 180.02562 * 28 26 24 30 30 H 1.48507 * 109.46630 * 299.99926 * 28 26 24 31 31 H 1.48498 * 109.47289 * 59.99473 * 28 26 24 32 32 H 1.08998 * 109.47137 * 300.25029 * 1 2 3 33 33 H 1.08999 * 109.47053 * 60.24476 * 1 2 3 34 34 H 1.08995 * 109.47249 * 180.24771 * 1 2 3 35 35 H 0.97006 * 120.00095 * 22.17106 * 6 4 2 36 36 H 1.08003 * 125.80564 * 359.92195 * 10 9 7 37 37 H 1.07998 * 126.48767 * 180.22513 * 16 13 11 38 38 H 1.09000 * 110.72361 * 219.68377 * 17 4 2 39 39 H 1.09003 * 110.72156 * 96.39620 * 17 4 2 40 40 H 1.09000 * 110.66710 * 278.97719 * 18 17 4 41 41 H 1.08998 * 110.80827 * 155.91671 * 18 17 4 42 42 H 1.09002 * 109.46583 * 56.70545 * 20 19 2 43 43 H 1.09001 * 109.47064 * 296.70881 * 20 19 2 44 44 H 0.97006 * 120.00047 * 0.02562 * 23 21 20 45 45 H 0.96992 * 120.00647 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2238 -1.1400 -1.8265 6 7 2.8836 0.1378 -2.0573 7 6 3.0744 -0.1334 -3.3637 8 8 2.5588 -1.1154 -3.8624 9 6 3.9079 0.7601 -4.1876 10 6 4.5538 1.9045 -3.7618 11 7 5.2088 2.4360 -4.8085 12 1 5.7443 3.2445 -4.7843 13 6 5.0001 1.6508 -5.9203 14 6 5.5328 1.8898 -7.2277 15 7 5.9570 2.0785 -8.2645 16 6 4.2029 0.6041 -5.5619 17 6 2.9059 -1.9117 -0.6762 18 6 3.2681 -1.4185 0.7472 19 7 2.0338 -0.7205 1.1893 20 6 2.3212 0.2122 2.2873 21 6 2.7539 -0.5632 3.5049 22 8 2.7088 -1.7753 3.4996 23 7 3.1911 0.0900 4.5996 24 6 3.5844 -0.6153 5.7074 25 1 3.5442 -1.6946 5.7028 26 6 4.0346 0.0582 6.8362 27 7 4.0831 1.3714 6.8422 28 14 4.5711 -0.9030 8.3455 29 1 5.0043 0.0420 9.4059 30 1 3.4336 -1.7175 8.8436 31 1 5.7009 -1.7975 7.9870 32 1 -0.3633 0.5177 0.8877 33 1 -0.3633 0.5100 -0.8922 34 1 -0.3633 -1.0276 0.0044 35 1 3.2952 0.9209 -1.6593 36 1 4.5350 2.3045 -2.7588 37 1 3.8596 -0.1917 -6.2063 38 1 3.8052 -2.0557 -1.2750 39 1 2.3213 -2.8305 -0.6290 40 1 4.1097 -0.7268 0.7121 41 1 3.4904 -2.2598 1.4036 42 1 1.4239 0.7852 2.5214 43 1 3.1185 0.8921 1.9872 44 1 3.2269 1.0594 4.6039 45 1 4.3971 1.8416 7.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707243279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:44 Heat of formation + Delta-G solvation = -11.293051 kcal Electronic energy + Delta-G solvation = -28920.970398 eV Core-core repulsion = 24745.405049 eV Total energy + Delta-G solvation = -4175.565348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.48369 -41.11040 -40.02503 -38.93778 -37.60805 -35.95787 -35.20306 -33.26426 -32.72984 -32.19872 -31.96981 -30.62656 -28.03676 -26.47690 -25.75564 -24.07073 -23.52781 -22.30304 -21.36951 -21.02075 -20.90582 -20.18495 -19.80955 -17.87635 -17.47890 -17.29461 -16.78742 -16.49776 -16.39103 -16.18224 -16.02937 -15.74016 -15.36841 -15.20163 -15.15043 -14.98699 -14.61982 -14.20166 -14.15072 -14.02683 -13.76428 -13.66498 -13.60993 -13.42164 -13.26433 -12.91715 -12.86033 -12.64333 -12.39621 -12.29687 -12.26398 -12.10567 -12.05599 -11.64786 -11.42356 -10.97913 -10.26236 -10.22144 -9.96358 -9.93656 -9.38254 -9.23931 -8.42437 -5.89977 0.36779 0.80735 1.22915 1.41982 1.44190 1.54104 2.10735 2.12767 2.21459 2.28694 2.32914 2.61010 2.88805 3.07061 3.25192 3.40244 3.57070 3.84665 3.86475 4.13859 4.14649 4.24010 4.27587 4.37271 4.41343 4.50405 4.53982 4.64372 4.67043 4.85219 4.91741 4.94152 5.02475 5.12839 5.15534 5.23154 5.40493 5.45134 5.47363 5.57337 5.58650 5.93273 6.05570 6.20113 6.24981 6.40589 6.66908 6.71432 7.18952 7.40700 7.63470 8.20394 8.74621 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.001950 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.275557 B =14354.645149 C =15274.295115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.087 0.913 4 C 0.151 3.849 5 H 0.091 0.909 6 N -0.706 5.706 7 C 0.591 3.409 8 O -0.587 6.587 9 C -0.256 4.256 10 C 0.129 3.871 11 N -0.500 5.500 12 H 0.445 0.555 13 C 0.037 3.963 14 C 0.302 3.698 15 N -0.451 5.451 16 C -0.057 4.057 17 C -0.123 4.123 18 C 0.045 3.955 19 N -0.509 5.509 20 C 0.052 3.948 21 C 0.441 3.559 22 O -0.617 6.617 23 N -0.575 5.575 24 C -0.331 4.331 25 H 0.076 0.924 26 C -0.011 4.011 27 N -0.919 5.919 28 Si 0.988 3.012 29 H -0.271 1.271 30 H -0.275 1.275 31 H -0.273 1.273 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.413 0.587 36 H 0.233 0.767 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 9.829 -20.228 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 H 0.104 0.896 4 C 0.045 3.955 5 H 0.109 0.891 6 N -0.358 5.358 7 C 0.380 3.620 8 O -0.468 6.468 9 C -0.265 4.265 10 C -0.016 4.016 11 N -0.095 5.095 12 H 0.288 0.712 13 C -0.074 4.074 14 C -0.012 4.012 15 N -0.128 5.128 16 C -0.086 4.086 17 C -0.162 4.162 18 C -0.083 4.083 19 N -0.234 5.234 20 C -0.079 4.079 21 C 0.228 3.772 22 O -0.502 6.502 23 N -0.213 5.213 24 C -0.460 4.460 25 H 0.094 0.906 26 C -0.211 4.211 27 N -0.560 5.560 28 Si 0.812 3.188 29 H -0.195 1.195 30 H -0.200 1.200 31 H -0.199 1.199 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.249 0.751 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.437 8.565 -21.877 23.497 hybrid contribution 1.127 0.814 1.270 1.883 sum 1.564 9.379 -20.607 22.694 Atomic orbital electron populations 1.21726 0.92653 1.02268 1.02371 1.22686 0.97336 0.96999 0.87580 0.89552 1.21624 0.93250 0.89737 0.90893 0.89061 1.45781 1.51973 1.29310 1.08714 1.17651 0.79173 0.83774 0.81355 1.90786 1.51910 1.30658 1.73479 1.19432 1.10904 1.01230 0.94944 1.23112 0.91863 0.92568 0.94051 1.41591 1.38812 1.22953 1.06133 0.71216 1.14895 1.10829 0.98841 0.82849 1.24409 0.92085 0.93037 0.91697 1.81368 1.10952 1.08422 1.12097 1.21140 0.95865 0.96667 0.94918 1.22810 1.00329 0.98590 0.94510 1.23118 0.91030 0.98548 0.95576 1.64406 1.27853 1.25694 1.05491 1.21936 1.02336 0.93683 0.89980 1.20836 0.82234 0.88461 0.85635 1.90501 1.59775 1.16039 1.83933 1.41907 1.57774 1.09359 1.12238 1.19575 1.41521 0.92524 0.92409 0.90581 1.25934 0.97125 0.96660 1.01356 1.69646 1.47433 1.07253 1.31711 0.85065 0.78587 0.77822 0.77329 1.19549 1.19995 1.19861 0.92276 0.90303 0.93107 0.74904 0.75076 0.83267 0.90472 0.91228 0.93222 0.92452 0.87172 0.90469 0.76959 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.32 71.98 0.67 -1.76 16 2 C 0.06 1.19 2.87 45.06 0.13 1.32 16 3 H 0.09 1.15 7.23 -2.39 -0.02 1.14 16 4 C 0.15 2.93 2.93 45.87 0.13 3.06 16 5 H 0.09 2.03 7.19 -2.38 -0.02 2.02 16 6 N -0.71 -9.53 5.07 -441.68 -2.24 -11.77 16 7 C 0.59 10.65 7.81 86.65 0.68 11.33 16 8 O -0.59 -16.41 16.62 -4.06 -0.07 -16.48 16 9 C -0.26 -2.97 6.13 -20.11 -0.12 -3.09 16 10 C 0.13 0.27 11.43 84.27 0.96 1.23 16 11 N -0.50 -1.03 6.02 -186.46 -1.12 -2.16 16 12 H 0.45 -1.92 8.96 -92.71 -0.83 -2.75 16 13 C 0.04 0.36 6.90 39.03 0.27 0.63 16 14 C 0.30 4.30 15.88 88.33 1.40 5.71 16 15 N -0.45 -8.92 18.54 19.00 0.35 -8.57 16 16 C -0.06 -0.76 10.59 22.62 0.24 -0.52 16 17 C -0.12 -2.99 6.78 31.80 0.22 -2.78 16 18 C 0.04 1.31 5.79 86.65 0.50 1.81 16 19 N -0.51 -14.57 4.62 -862.59 -3.99 -18.55 16 20 C 0.05 1.58 5.18 85.56 0.44 2.02 16 21 C 0.44 19.81 7.47 87.66 0.65 20.47 16 22 O -0.62 -33.08 14.39 -3.07 -0.04 -33.13 16 23 N -0.57 -28.05 5.29 -307.00 -1.62 -29.67 16 24 C -0.33 -18.24 9.68 84.04 0.81 -17.42 16 25 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 26 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 27 N -0.92 -47.87 13.05 21.66 0.28 -47.59 16 28 Si 0.99 42.03 29.55 68.60 2.03 44.06 16 29 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 30 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 31 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 2.48 7.19 -92.70 -0.67 1.82 16 36 H 0.23 -1.64 7.44 -2.91 -0.02 -1.66 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.29 7.91 -2.39 -0.02 1.27 16 41 H 0.06 2.19 6.84 -2.39 -0.02 2.18 16 42 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 44 H 0.40 18.12 7.90 -92.70 -0.73 17.39 16 45 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -81.21 389.64 -0.11 -81.33 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -1.15 Total: 20.64 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.46 Total: 21.89 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -8.34 Total: -118.32 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.11 Total: -49.61 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -81.21 -0.11 -81.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707243279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.034 kcal (2) G-P(sol) polarization free energy of solvation -81.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds