Wall clock time and date at job start Wed Apr 1 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.64017 * 2 1 4 4 C 1.54318 * 110.72325 * 236.85489 * 2 1 3 5 5 N 1.47017 * 107.27397 * 263.65415 * 4 2 1 6 6 C 1.34781 * 125.65010 * 181.02209 * 5 4 2 7 7 O 1.21643 * 120.00049 * 184.87187 * 6 5 4 8 8 C 1.47198 * 119.99818 * 4.86275 * 6 5 4 9 9 C 1.38845 * 120.90923 * 314.50685 * 8 6 5 10 10 C 1.39935 * 119.43629 * 180.37059 * 9 8 6 11 11 C 1.35019 * 121.26464 * 359.84654 * 10 9 8 12 12 N 1.36251 * 121.58266 * 0.10357 * 11 10 9 13 13 C 1.36373 * 133.87582 * 179.97438 * 12 11 10 14 14 O 1.35719 * 126.33421 * 0.02562 * 13 12 11 15 15 N 1.31101 * 107.33004 * 180.02562 * 13 12 11 16 16 N 1.28688 * 110.31514 * 0.02562 * 15 13 12 17 17 C 1.31485 * 109.66838 * 359.97438 * 16 15 13 18 18 C 1.47422 * 108.70279 * 1.28333 * 5 4 2 19 19 C 1.55133 * 104.72145 * 335.55737 * 18 5 4 20 20 H 1.09000 * 111.18529 * 279.18613 * 19 18 5 21 21 C 1.52997 * 110.93783 * 155.28928 * 19 18 5 22 22 N 1.46501 * 109.47161 * 72.95717 * 21 19 18 23 23 C 1.36943 * 120.00109 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99468 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00134 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00221 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99936 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47065 * 89.99923 * 27 25 23 29 29 H 1.48496 * 109.46804 * 209.99989 * 27 25 23 30 30 H 1.48499 * 109.46827 * 329.99701 * 27 25 23 31 31 H 1.09001 * 109.47459 * 181.69330 * 1 2 3 32 32 H 1.09003 * 109.47244 * 301.68874 * 1 2 3 33 33 H 1.09002 * 109.47292 * 61.68766 * 1 2 3 34 34 H 1.08999 * 109.88763 * 144.22793 * 4 2 1 35 35 H 1.09002 * 109.88072 * 23.07007 * 4 2 1 36 36 H 1.08003 * 120.28041 * 0.24469 * 9 8 6 37 37 H 1.07995 * 119.36544 * 179.97438 * 10 9 8 38 38 H 1.07996 * 119.20359 * 180.12655 * 11 10 9 39 39 H 0.96698 * 113.99242 * 269.99791 * 14 13 12 40 40 H 1.09004 * 110.36769 * 94.48299 * 18 5 4 41 41 H 1.08997 * 110.36617 * 216.80608 * 18 5 4 42 42 H 1.09004 * 109.47151 * 192.95167 * 21 19 18 43 43 H 1.08995 * 109.47327 * 312.95277 * 21 19 18 44 44 H 0.96994 * 120.00304 * 359.97438 * 22 21 19 45 45 H 0.96999 * 119.99924 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9141 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 2.3756 -2.1506 -0.7415 6 6 2.8902 -3.1436 -1.4936 7 8 3.0156 -4.2592 -1.0250 8 6 3.3004 -2.8782 -2.8822 9 6 2.4848 -2.1531 -3.7406 10 6 2.9018 -1.9256 -5.0569 11 6 4.0844 -2.3952 -5.5084 12 7 4.9211 -3.1111 -4.7061 13 6 6.1410 -3.6919 -4.8915 14 8 6.8693 -3.6848 -6.0366 15 7 6.4799 -4.2584 -3.7588 16 7 5.5617 -4.0762 -2.8758 17 6 4.5778 -3.3777 -3.3981 18 6 2.0140 -2.2517 0.6841 19 6 2.0827 -0.7947 1.2125 20 1 3.1095 -0.5043 1.4347 21 6 1.1873 -0.6155 2.4400 22 7 1.8006 -1.2794 3.5930 23 6 1.1758 -1.2519 4.8113 24 1 0.2311 -0.7404 4.9221 25 6 1.7567 -1.8813 5.9036 26 7 2.9078 -2.5050 5.7683 27 14 0.9040 -1.8443 7.5653 28 1 0.0008 -3.0170 7.6843 29 1 1.9221 -1.8920 8.6452 30 1 0.1113 -0.5945 7.6871 31 1 -0.3634 -1.0272 0.0304 32 1 -0.3634 0.5398 0.8745 33 1 -0.3634 0.4874 -0.9047 34 1 2.9850 -0.3162 -1.5801 35 1 1.3251 -0.8249 -1.9978 36 1 1.5358 -1.7697 -3.3959 37 1 2.2663 -1.3618 -5.7237 38 1 4.3741 -2.1983 -6.5300 39 1 6.6855 -4.4305 -6.6242 40 1 1.0050 -2.6497 0.7923 41 1 2.7296 -2.8809 1.2133 42 1 1.0704 0.4472 2.6525 43 1 0.2099 -1.0566 2.2443 44 1 2.6493 -1.7384 3.4935 45 1 3.3139 -2.9445 6.5318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716994280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:50 Heat of formation + Delta-G solvation = 70.879593 kcal Electronic energy + Delta-G solvation = -29890.103338 eV Core-core repulsion = 25718.101263 eV Total energy + Delta-G solvation = -4172.002075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.91253 -40.39400 -38.64836 -38.12784 -37.87115 -34.77945 -34.11845 -32.79902 -31.58192 -31.18159 -29.69940 -28.78740 -26.86794 -25.94373 -24.91761 -23.88970 -23.46481 -22.82527 -21.78556 -20.52177 -19.30542 -19.11495 -18.65846 -17.80481 -17.34039 -17.07695 -16.76663 -16.03989 -15.82820 -15.66845 -15.15026 -14.86179 -14.56667 -13.98911 -13.93007 -13.59112 -13.35498 -13.09570 -13.04378 -12.96450 -12.71665 -12.56569 -12.42152 -12.26248 -12.04549 -11.81521 -11.65352 -11.44918 -11.02366 -10.82902 -10.80938 -10.55515 -10.42985 -10.35393 -10.09889 -10.00590 -9.94858 -9.65603 -8.84700 -8.68506 -8.53766 -6.89698 -5.72253 -3.02044 -0.21522 0.51285 1.34850 2.10792 2.34313 2.70560 3.05219 3.16397 3.46719 3.51113 3.53269 3.53549 3.76774 4.06943 4.12415 4.31911 4.44669 4.58375 4.72174 4.77313 4.88888 4.96375 5.10396 5.26030 5.28999 5.34190 5.36060 5.40517 5.47813 5.59679 5.62682 5.74935 5.81426 5.93838 6.01267 6.02751 6.13548 6.17748 6.27875 6.36685 6.44118 6.68926 6.73600 6.82457 7.42379 7.72457 8.04381 8.09040 8.45726 9.56865 10.14007 10.47832 11.50271 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.002388 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.153366 B =11721.131065 C =12894.223007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.099 3.901 5 N -0.609 5.609 6 C 0.578 3.422 7 O -0.503 6.503 8 C -0.068 4.068 9 C -0.055 4.055 10 C -0.139 4.139 11 C 0.083 3.917 12 N -0.406 5.406 13 C 0.315 3.685 14 O -0.427 6.427 15 N -0.235 5.235 16 N -0.246 5.246 17 C 0.231 3.769 18 C 0.119 3.881 19 C -0.102 4.102 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.734 5.734 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.405 0.595 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 5.614 -31.396 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.024 4.024 5 N -0.343 5.343 6 C 0.364 3.636 7 O -0.377 6.377 8 C -0.075 4.075 9 C -0.079 4.079 10 C -0.161 4.161 11 C -0.039 4.039 12 N -0.099 5.099 13 C 0.015 3.985 14 O -0.225 6.225 15 N -0.084 5.084 16 N -0.092 5.092 17 C -0.021 4.021 18 C -0.002 4.002 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.262 0.738 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.811 4.594 -29.952 30.313 hybrid contribution -0.903 0.206 -0.583 1.095 sum -1.715 4.799 -30.535 30.957 Atomic orbital electron populations 1.21850 0.93905 1.02492 1.01955 1.22194 0.96681 0.99216 0.93545 0.89159 1.22369 0.99884 0.82485 0.97656 1.48397 1.62486 1.11098 1.12330 1.17040 0.78439 0.84345 0.83819 1.90923 1.53406 1.21425 1.71972 1.20086 0.90784 1.00665 0.96015 1.21953 0.99635 0.93642 0.92675 1.20804 0.95883 1.02558 0.96832 1.21733 0.90677 0.94519 0.96937 1.44060 1.15424 1.37743 1.12634 1.21796 0.83230 1.02014 0.91469 1.85026 1.58433 1.51717 1.27370 1.74726 1.20531 1.16613 0.96577 1.74997 0.97595 1.15463 1.21110 1.22570 0.97321 1.00758 0.81412 1.22452 1.01598 0.98068 0.78124 1.22681 1.01349 0.93281 0.94830 0.89474 1.20623 0.94094 0.95983 0.85463 1.42393 1.25589 1.64625 1.05196 1.19180 1.03012 1.28595 0.86533 0.91201 1.24756 0.97267 1.00728 0.98132 1.69660 1.17952 1.39910 1.30315 0.86205 0.78340 0.77574 0.84136 1.21713 1.21796 1.20814 0.92220 0.91300 0.92885 0.91369 0.91259 0.82261 0.81833 0.80995 0.73780 0.90677 0.89529 0.95876 0.95684 0.78202 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.91 37.15 0.29 -1.08 16 2 C -0.10 -1.00 3.46 -88.79 -0.31 -1.31 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.10 0.92 5.18 -3.07 -0.02 0.90 16 5 N -0.61 -8.24 3.32 -171.73 -0.57 -8.81 16 6 C 0.58 8.90 7.47 -12.62 -0.09 8.80 16 7 O -0.50 -10.13 17.33 5.24 0.09 -10.04 16 8 C -0.07 -0.81 5.62 -102.69 -0.58 -1.39 16 9 C -0.05 -0.37 8.65 -38.72 -0.33 -0.70 16 10 C -0.14 -0.54 9.91 -40.09 -0.40 -0.94 16 11 C 0.08 0.44 10.93 -16.73 -0.18 0.25 16 12 N -0.41 -4.04 2.97 -62.51 -0.19 -4.23 16 13 C 0.31 3.48 9.41 -88.65 -0.83 2.64 16 14 O -0.43 -3.01 13.65 -18.86 -0.26 -3.27 16 15 N -0.23 -3.58 12.20 29.71 0.36 -3.22 16 16 N -0.25 -4.21 12.26 32.37 0.40 -3.82 16 17 C 0.23 3.18 7.88 -153.91 -1.21 1.97 16 18 C 0.12 1.91 5.99 -2.41 -0.01 1.89 16 19 C -0.10 -1.53 2.93 -88.35 -0.26 -1.78 16 20 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 21 C 0.17 3.10 4.54 -4.04 -0.02 3.08 16 22 N -0.73 -18.27 5.55 -59.91 -0.33 -18.60 16 23 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 27 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 32 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.44 5.64 -51.93 -0.29 0.14 16 36 H 0.16 0.69 5.77 -52.48 -0.30 0.39 16 37 H 0.16 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.17 0.24 8.06 -52.49 -0.42 -0.18 16 39 H 0.40 0.58 9.06 45.56 0.41 0.99 16 40 H 0.08 1.22 7.48 -51.93 -0.39 0.83 16 41 H 0.09 1.67 8.08 -51.93 -0.42 1.25 16 42 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 43 H 0.03 0.47 6.95 -51.93 -0.36 0.11 16 44 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -39.68 374.61 -8.27 -47.95 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.92 Total: 3.74 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -4.20 Total: 4.99 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.39 Total: -66.58 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.17 Total: -13.31 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.68 -8.27 -47.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716994280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.831 kcal (2) G-P(sol) polarization free energy of solvation -39.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds