Wall clock time and date at job start Wed Apr 1 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.87396 * 2 1 4 4 C 1.54324 * 110.01016 * 238.90636 * 2 1 3 5 5 H 1.08993 * 110.71719 * 336.67786 * 4 2 1 6 6 N 1.46898 * 110.72434 * 99.95499 * 4 2 1 7 7 C 1.46897 * 111.00098 * 204.99838 * 6 4 2 8 8 C 1.50703 * 109.47337 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00278 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99953 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00303 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99855 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00089 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47112 * 60.00383 * 15 13 11 17 17 H 1.48502 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47010 * 300.00280 * 15 13 11 19 19 C 1.55159 * 102.93986 * 218.31633 * 4 2 1 20 20 C 1.54694 * 101.67722 * 35.33161 * 19 4 2 21 21 N 1.47017 * 109.88185 * 121.01520 * 2 1 3 22 22 C 1.34769 * 125.65070 * 298.47717 * 21 2 1 23 23 O 1.21645 * 120.00000 * 1.86702 * 22 21 2 24 24 C 1.47051 * 120.00183 * 181.86681 * 22 21 2 25 25 C 1.38006 * 125.92411 * 172.22570 * 24 22 21 26 26 C 1.39352 * 107.48914 * 180.16041 * 25 24 22 27 27 C 1.38084 * 107.51365 * 359.63478 * 26 25 24 28 28 C 1.43204 * 125.89190 * 180.24371 * 27 26 25 29 29 N 7.83317 * 114.55788 * 133.39172 * 2 1 3 30 30 N 1.36714 * 108.21264 * 0.22812 * 27 26 25 31 31 H 0.96994 * 125.69212 * 179.97438 * 30 27 26 32 32 H 1.08999 * 109.46852 * 300.44117 * 1 2 3 33 33 H 1.09003 * 109.47009 * 60.43312 * 1 2 3 34 34 H 1.08993 * 109.46836 * 180.43503 * 1 2 3 35 35 H 1.00901 * 110.99662 * 328.94937 * 6 4 2 36 36 H 1.08993 * 109.47045 * 299.99975 * 7 6 4 37 37 H 1.09003 * 109.47056 * 59.99936 * 7 6 4 38 38 H 0.97007 * 119.99731 * 0.02562 * 10 8 7 39 39 H 0.97000 * 120.00035 * 180.02562 * 14 13 11 40 40 H 1.09004 * 111.00299 * 153.57418 * 19 4 2 41 41 H 1.09002 * 111.00541 * 277.38677 * 19 4 2 42 42 H 1.09004 * 110.39136 * 204.36222 * 20 19 4 43 43 H 1.09007 * 110.23165 * 82.11221 * 20 19 4 44 44 H 1.07997 * 126.25303 * 0.03914 * 25 24 22 45 45 H 1.08000 * 126.24382 * 179.89897 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 1 1.3104 -1.4470 -1.6179 6 7 2.4591 0.1997 -2.2893 7 6 2.3929 -0.4240 -3.6176 8 6 2.8097 0.5772 -4.6641 9 8 3.1309 1.6997 -4.3355 10 7 2.8266 0.2250 -5.9648 11 6 3.2063 1.1356 -6.9167 12 1 3.4923 2.1351 -6.6242 13 6 3.2242 0.7723 -8.2578 14 7 2.8767 -0.4440 -8.6137 15 14 3.7410 2.0133 -9.5548 16 1 5.1312 2.4607 -9.2858 17 1 3.6757 1.3823 -10.8975 18 1 2.8274 3.1832 -9.5122 19 6 3.2918 -1.5107 -0.6895 20 6 2.8223 -1.8731 0.7393 21 7 2.0300 -0.7124 1.1849 22 6 1.8061 -0.3595 2.4661 23 8 1.1105 0.6061 2.7184 24 6 2.4026 -1.1417 3.5592 25 6 2.3815 -0.8086 4.8983 26 6 3.0588 -1.8111 5.5899 27 6 3.4763 -2.7459 4.6633 28 6 4.2064 -3.9440 4.9499 29 7 4.7856 -4.8945 5.1773 30 7 3.0720 -2.3304 3.4252 31 1 3.2323 -2.7984 2.5909 32 1 -0.3633 0.5207 0.8860 33 1 -0.3633 0.5071 -0.8939 34 1 -0.3633 -1.0276 0.0078 35 1 1.8963 1.0363 -2.2542 36 1 3.0625 -1.2834 -3.6493 37 1 1.3720 -0.7514 -3.8148 38 1 2.5701 -0.6729 -6.2276 39 1 2.8896 -0.6978 -9.5498 40 1 3.4921 -2.4073 -1.2760 41 1 4.1684 -0.8635 -0.6572 42 1 3.6803 -2.0210 1.3950 43 1 2.2022 -2.7693 0.7163 44 1 1.9254 0.0695 5.3309 45 1 3.2231 -1.8518 6.6566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725569495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:07 Heat of formation + Delta-G solvation = 3.448158 kcal Electronic energy + Delta-G solvation = -28898.155941 eV Core-core repulsion = 24723.229819 eV Total energy + Delta-G solvation = -4174.926122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.68253 -41.02473 -40.08987 -38.87597 -37.62839 -36.25906 -35.62541 -33.30143 -33.01417 -32.15518 -31.94626 -30.54797 -28.45697 -26.58508 -25.56485 -25.15034 -23.39239 -22.26478 -21.65223 -21.38081 -20.93037 -19.91041 -19.58726 -18.31583 -17.79903 -17.67998 -16.87520 -16.51596 -16.40662 -16.18834 -15.88714 -15.79161 -15.40179 -15.27836 -14.87151 -14.63493 -14.54775 -14.41301 -14.31943 -14.13734 -13.95556 -13.87545 -13.75359 -13.48000 -13.31871 -13.27689 -13.12666 -12.84588 -12.75093 -12.44297 -12.41747 -12.12879 -12.04855 -11.71635 -11.49509 -11.25115 -10.33761 -10.21201 -10.00623 -9.92703 -9.40707 -9.37085 -8.46161 -5.94406 -0.13318 1.08709 1.10737 1.40094 1.42487 1.52681 1.64575 1.98927 2.07073 2.19663 2.29737 2.34833 2.85954 2.91443 3.19864 3.21822 3.46761 3.48858 3.59790 4.00584 4.09069 4.13100 4.19043 4.23507 4.26934 4.34724 4.39403 4.50748 4.51241 4.61279 4.69850 4.82645 4.95111 4.97791 5.07711 5.16031 5.20850 5.24357 5.41779 5.45974 5.68592 5.88969 6.00876 6.09920 6.26205 6.29311 6.33854 6.61200 6.91720 7.13821 7.57839 8.13461 8.70735 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.001823 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.700219 B =15351.539159 C =16129.053232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.066 0.934 4 C 0.082 3.918 5 H 0.086 0.914 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.273 1.273 19 C -0.120 4.120 20 C 0.082 3.918 21 N -0.608 5.608 22 C 0.598 3.402 23 O -0.555 6.555 24 C -0.009 4.009 25 C -0.117 4.117 26 C -0.111 4.111 27 C 0.087 3.913 28 C 0.299 3.701 29 N -0.433 5.433 30 N -0.510 5.510 31 H 0.432 0.568 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.346 0.654 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.166 0.834 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -9.706 24.271 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.084 0.916 4 C -0.028 4.028 5 H 0.104 0.896 6 N -0.304 5.304 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.158 4.158 20 C -0.041 4.041 21 N -0.342 5.342 22 C 0.388 3.612 23 O -0.433 6.433 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.031 4.031 28 C -0.016 4.016 29 N -0.111 5.111 30 N -0.114 5.114 31 H 0.279 0.721 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.183 0.817 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.875 -10.200 24.702 26.791 hybrid contribution -0.876 0.485 -1.729 1.998 sum -2.750 -9.715 22.973 25.094 Atomic orbital electron populations 1.22103 0.93721 1.03018 1.02762 1.21624 0.94876 0.96264 0.83997 0.91604 1.22689 0.96976 0.93636 0.89537 0.89603 1.60163 1.60812 1.07616 1.01765 1.21584 1.01740 0.95832 0.87278 1.20937 0.83199 0.89679 0.83801 1.90510 1.54782 1.24278 1.81599 1.41914 1.59532 1.14416 1.05120 1.19605 1.43769 0.95616 0.87365 0.90440 1.25992 0.96924 0.98778 0.99479 1.69652 1.48113 1.19005 1.19177 0.85027 0.78751 0.77841 0.76963 1.19844 1.19526 1.19795 1.22844 0.97677 1.01547 0.93777 1.22863 0.95467 0.89236 0.96508 1.48431 1.51983 1.29321 1.04426 1.16987 0.80138 0.83440 0.80600 1.90845 1.40063 1.29133 1.83265 1.20330 1.06445 0.90148 0.95751 1.21489 1.01771 1.01228 0.89785 1.21591 0.99876 0.92089 1.00328 1.15625 1.07644 0.93305 0.86556 1.24280 0.92114 0.91115 0.94073 1.81396 1.11218 1.11454 1.07013 1.42663 1.41855 1.18127 1.08771 0.72054 0.92466 0.91167 0.91029 0.83481 0.87155 0.91045 0.76872 0.91317 0.87249 0.90739 0.89155 0.87525 0.81674 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.11 71.98 0.66 -2.31 16 2 C 0.14 2.69 2.97 45.34 0.13 2.82 16 3 H 0.07 1.66 7.90 -2.38 -0.02 1.64 16 4 C 0.08 1.48 2.81 46.11 0.13 1.61 16 5 H 0.09 1.27 7.54 -2.39 -0.02 1.25 16 6 N -0.67 -18.24 5.97 -489.46 -2.92 -21.16 16 7 C 0.07 2.01 6.03 85.56 0.52 2.53 16 8 C 0.44 19.58 7.82 87.66 0.69 20.26 16 9 O -0.63 -33.51 15.78 -3.08 -0.05 -33.56 16 10 N -0.57 -28.12 5.29 -306.99 -1.62 -29.74 16 11 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 14 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 15 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 C -0.12 -1.65 6.76 31.91 0.22 -1.43 16 20 C 0.08 0.77 5.42 86.78 0.47 1.24 16 21 N -0.61 -10.15 3.07 -792.73 -2.43 -12.58 16 22 C 0.60 11.89 7.63 86.56 0.66 12.56 16 23 O -0.56 -15.18 15.85 -4.17 -0.07 -15.25 16 24 C -0.01 -0.12 6.83 40.58 0.28 0.16 16 25 C -0.12 -1.41 10.61 22.48 0.24 -1.17 16 26 C -0.11 -0.92 10.80 22.50 0.24 -0.68 16 27 C 0.09 0.84 6.93 39.59 0.27 1.12 16 28 C 0.30 3.80 15.89 88.33 1.40 5.20 16 29 N -0.43 -7.75 18.54 19.01 0.35 -7.40 16 30 N -0.51 -4.73 5.40 -175.93 -0.95 -5.68 16 31 H 0.43 2.28 5.18 -92.71 -0.48 1.80 16 32 H 0.06 1.30 6.81 -2.39 -0.02 1.28 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.35 10.42 8.02 -89.69 -0.72 9.70 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.40 18.33 7.90 -92.70 -0.73 17.59 16 39 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 0.57 5.57 -2.38 -0.01 0.56 16 43 H 0.11 0.45 8.10 -2.38 -0.02 0.43 16 44 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -74.41 386.02 0.96 -73.46 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.85 Total: 31.64 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 7.19 Total: 24.05 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -7.29 Total: -124.56 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.81 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -74.41 0.96 -73.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725569495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.905 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds