Wall clock time and date at job start Wed Apr 1 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87084 * 2 1 4 4 C 1.54321 * 109.88212 * 121.01303 * 2 1 3 5 5 C 1.55152 * 102.94249 * 97.38305 * 4 2 1 6 6 H 1.09002 * 111.00610 * 277.38724 * 5 4 2 7 7 N 1.46901 * 111.00683 * 153.57702 * 5 4 2 8 8 C 1.46903 * 111.00190 * 154.99942 * 7 5 4 9 9 C 1.50701 * 109.47261 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99956 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00119 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00204 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99965 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00160 * 179.72378 * 12 11 9 15 15 N 1.31409 * 119.99873 * 0.27208 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 180.27817 * 14 12 11 17 17 H 1.48496 * 109.47325 * 59.99926 * 16 14 12 18 18 H 1.48502 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46907 * 299.99629 * 16 14 12 20 20 C 1.54907 * 101.58249 * 35.50164 * 5 4 2 21 21 N 1.47019 * 110.01485 * 238.90025 * 2 1 3 22 22 C 1.34778 * 125.64391 * 59.49714 * 21 2 1 23 23 O 1.21673 * 120.00320 * 354.46914 * 22 21 2 24 24 C 1.46790 * 119.99728 * 174.47238 * 22 21 2 25 25 C 1.36412 * 125.85142 * 173.14693 * 24 22 21 26 26 C 1.41268 * 107.03427 * 179.97438 * 25 24 22 27 27 C 1.43207 * 126.45509 * 180.02562 * 26 25 24 28 28 N 8.56446 * 101.06451 * 254.91108 * 2 1 3 29 29 C 1.38179 * 107.09601 * 0.02562 * 26 25 24 30 30 N 1.34424 * 108.38242 * 359.72605 * 29 26 25 31 31 H 0.97002 * 125.41168 * 180.26220 * 30 29 26 32 32 H 1.08998 * 109.47264 * 298.98538 * 1 2 3 33 33 H 1.08994 * 109.46893 * 58.98585 * 1 2 3 34 34 H 1.08998 * 109.46841 * 178.98336 * 1 2 3 35 35 H 1.09000 * 110.72099 * 339.02140 * 4 2 1 36 36 H 1.08997 * 110.72137 * 215.74441 * 4 2 1 37 37 H 1.00902 * 111.00174 * 31.04489 * 7 5 4 38 38 H 1.09002 * 109.46816 * 60.00022 * 8 7 5 39 39 H 1.08998 * 109.47341 * 300.00022 * 8 7 5 40 40 H 0.96998 * 119.99824 * 359.97438 * 11 9 8 41 41 H 0.97004 * 120.00058 * 180.02562 * 15 14 12 42 42 H 1.08996 * 110.36781 * 81.82956 * 20 5 4 43 43 H 1.09000 * 110.36715 * 204.15522 * 20 5 4 44 44 H 1.07993 * 126.47881 * 0.02791 * 25 24 22 45 45 H 1.08002 * 125.81477 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1672 0.6946 6 1 1.4506 -2.7737 0.6623 7 7 3.4008 -2.8281 1.4877 8 6 3.2885 -4.2898 1.3929 9 6 4.3741 -4.9316 2.2179 10 8 5.1640 -4.2395 2.8247 11 7 4.4679 -6.2746 2.2806 12 6 5.4558 -6.8585 3.0307 13 1 6.1587 -6.2423 3.5717 14 6 5.5490 -8.2431 3.1000 15 7 4.6935 -8.9930 2.4422 16 14 6.8904 -9.0387 4.1282 17 1 6.7436 -8.6177 5.5447 18 1 6.7743 -10.5163 4.0359 19 1 8.2201 -8.6146 3.6210 20 6 2.8619 -1.8472 -0.7340 21 7 2.0332 -0.7135 -1.1828 22 6 1.7797 -0.3849 -2.4651 23 8 0.9998 0.5135 -2.7202 24 6 2.4444 -1.1111 -3.5540 25 6 2.1815 -0.9707 -4.8852 26 6 3.0448 -1.8524 -5.5728 27 6 3.1174 -2.0389 -6.9908 28 7 3.1737 -2.1880 -8.1155 29 6 3.8062 -2.5011 -4.6194 30 7 3.4445 -2.0469 -3.4071 31 1 3.8255 -2.3343 -2.5625 32 1 -0.3634 0.4980 0.8989 33 1 -0.3633 0.5295 -0.8807 34 1 -0.3633 -1.0275 -0.0182 35 1 1.2908 -0.7886 2.0201 36 1 2.9641 -0.2792 1.6203 37 1 3.3710 -2.5248 2.4496 38 1 3.3938 -4.5955 0.3520 39 1 2.3143 -4.6044 1.7672 40 1 3.8364 -6.8281 1.7950 41 1 4.7583 -9.9596 2.4908 42 1 3.9135 -1.5618 -0.7089 43 1 2.7166 -2.7061 -1.3893 44 1 1.4520 -0.3097 -5.3293 45 1 4.5663 -3.2430 -4.8153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725595005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:55 Heat of formation + Delta-G solvation = 19.308766 kcal Electronic energy + Delta-G solvation = -29132.493264 eV Core-core repulsion = 24958.254910 eV Total energy + Delta-G solvation = -4174.238354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08464 -40.23804 -38.55150 -37.84064 -36.61599 -35.02465 -33.93271 -32.83651 -31.61037 -31.37150 -30.18207 -29.77519 -26.55334 -26.34943 -24.44889 -23.80332 -23.18301 -21.45076 -20.96808 -20.42134 -19.40314 -18.61279 -18.02380 -17.00334 -16.70707 -16.37878 -16.00671 -15.79898 -15.36365 -15.24690 -14.71856 -14.48657 -14.30732 -14.15540 -13.93048 -13.74590 -13.60798 -13.55231 -13.53394 -13.32855 -13.10780 -13.01821 -12.68912 -12.45358 -12.24516 -12.15300 -11.86187 -11.64209 -11.42781 -11.32893 -11.11944 -10.94637 -10.52981 -10.34705 -10.32176 -9.61688 -9.55371 -9.13256 -8.77010 -8.67949 -8.35688 -8.09172 -6.53090 -3.94533 1.01672 1.41512 2.31727 2.56585 2.60836 2.91282 3.11723 3.19088 3.22596 3.39513 3.70643 3.76071 3.91391 4.02178 4.11858 4.20331 4.39478 4.54014 4.65273 4.76218 4.80051 4.92473 4.96662 5.06787 5.11294 5.15770 5.18732 5.28284 5.38734 5.49100 5.51338 5.54883 5.66392 5.74735 5.75255 5.88474 6.01608 6.07730 6.10821 6.24292 6.72085 6.91216 7.06711 7.34212 7.40117 7.44230 7.75119 7.93276 8.47598 9.05795 9.40669 9.91114 10.64204 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.002416 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.512901 B =11587.887266 C =13926.161839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.078 3.922 6 H 0.067 0.933 7 N -0.657 5.657 8 C 0.049 3.951 9 C 0.437 3.563 10 O -0.583 6.583 11 N -0.560 5.560 12 C -0.302 4.302 13 H 0.103 0.897 14 C 0.024 3.976 15 N -0.900 5.900 16 Si 0.931 3.069 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.091 3.909 21 N -0.614 5.614 22 C 0.607 3.393 23 O -0.523 6.523 24 C -0.047 4.047 25 C -0.056 4.056 26 C -0.137 4.137 27 C 0.292 3.708 28 N -0.437 5.437 29 C 0.098 3.902 30 N -0.525 5.525 31 H 0.430 0.570 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.359 0.641 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.273 0.727 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.160 0.840 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 13.704 -7.664 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.034 4.034 6 H 0.085 0.915 7 N -0.291 5.291 8 C -0.084 4.084 9 C 0.222 3.778 10 O -0.468 6.468 11 N -0.197 5.197 12 C -0.432 4.432 13 H 0.121 0.879 14 C -0.178 4.178 15 N -0.541 5.541 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.033 4.033 21 N -0.349 5.349 22 C 0.396 3.604 23 O -0.399 6.399 24 C -0.158 4.158 25 C -0.083 4.083 26 C -0.147 4.147 27 C -0.023 4.023 28 N -0.113 5.113 29 C -0.047 4.047 30 N -0.124 5.124 31 H 0.275 0.725 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.181 0.819 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.178 0.822 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.807 14.274 -9.470 18.433 hybrid contribution -0.274 -1.329 1.527 2.043 sum -7.081 12.944 -7.943 16.757 Atomic orbital electron populations 1.22192 0.94295 1.02580 1.03264 1.21533 0.94962 0.96274 0.83416 0.90119 1.22976 1.02740 0.94713 0.96699 1.22575 0.93342 0.94833 0.92621 0.91541 1.59979 1.46436 1.05192 1.17494 1.21771 0.97709 0.87923 1.00997 1.19720 0.88168 0.83144 0.86729 1.90538 1.44811 1.62270 1.49164 1.41858 1.29396 1.04538 1.43868 1.19649 1.08512 0.89977 1.25041 0.87906 1.25273 0.98405 0.96257 0.97852 1.69594 1.36468 1.06029 1.42019 0.85915 0.80657 0.77647 0.80017 1.19851 1.20921 1.19815 1.22634 0.96012 0.88252 0.96410 1.48416 1.50886 1.30600 1.04988 1.16601 0.81146 0.82626 0.80000 1.90843 1.35407 1.30968 1.82693 1.19976 0.99415 1.01307 0.95134 1.21015 0.98902 0.98343 0.90070 1.15390 1.06576 1.07547 0.85207 1.24628 0.93162 0.93061 0.91497 1.81278 1.09038 1.09250 1.11731 1.22414 0.99836 0.99431 0.82998 1.42575 1.29102 1.31191 1.09534 0.72504 0.91554 0.90680 0.92455 0.89412 0.89029 0.81945 0.89752 0.93461 0.77459 0.91689 0.89358 0.90876 0.82247 0.79301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.04 37.16 0.34 -1.01 16 2 C 0.14 1.16 3.52 -66.95 -0.24 0.92 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -0.98 5.90 -24.90 -0.15 -1.13 16 5 C 0.08 0.68 3.38 -65.57 -0.22 0.46 16 6 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 7 N -0.66 -7.95 6.04 -105.72 -0.64 -8.59 16 8 C 0.05 0.69 6.03 -4.97 -0.03 0.66 16 9 C 0.44 9.13 7.82 -10.99 -0.09 9.05 16 10 O -0.58 -14.34 15.78 5.54 0.09 -14.25 16 11 N -0.56 -12.99 5.29 -10.96 -0.06 -13.05 16 12 C -0.30 -7.91 9.68 -14.93 -0.14 -8.06 16 13 H 0.10 2.83 7.16 -52.49 -0.38 2.46 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -23.23 13.05 55.50 0.72 -22.51 16 16 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.09 0.71 4.92 -2.53 -0.01 0.70 16 21 N -0.61 -5.43 3.08 -164.51 -0.51 -5.94 16 22 C 0.61 6.36 7.63 -12.80 -0.10 6.26 16 23 O -0.52 -6.95 15.60 5.21 0.08 -6.87 16 24 C -0.05 -0.41 6.76 -82.40 -0.56 -0.97 16 25 C -0.06 -0.49 10.54 -39.09 -0.41 -0.90 16 26 C -0.14 -1.11 5.97 -106.84 -0.64 -1.74 16 27 C 0.29 2.95 15.83 -22.47 -0.36 2.60 16 28 N -0.44 -5.50 18.54 41.83 0.78 -4.72 16 29 C 0.10 0.58 11.90 -16.44 -0.20 0.38 16 30 N -0.53 -3.34 5.28 -9.27 -0.05 -3.39 16 31 H 0.43 2.22 5.29 -40.82 -0.22 2.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.76 6.62 -51.93 -0.34 0.42 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.56 7.83 -51.93 -0.41 0.15 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.36 4.63 8.14 -39.29 -0.32 4.31 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.39 8.67 7.90 -40.82 -0.32 8.35 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.09 0.69 7.82 -51.93 -0.41 0.29 16 43 H 0.07 0.50 6.22 -51.93 -0.32 0.17 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.19 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -32.83 385.97 -7.32 -40.15 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.63 Total: 10.62 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -2.89 Total: 7.74 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.25 Total: -58.20 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.12 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.83 -7.32 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725595005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.460 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds