Wall clock time and date at job start Wed Apr 1 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87084 * 2 1 4 4 C 1.54321 * 109.88212 * 121.01303 * 2 1 3 5 5 C 1.55152 * 102.94249 * 97.38305 * 4 2 1 6 6 H 1.09002 * 111.00610 * 277.38724 * 5 4 2 7 7 N 1.46901 * 111.00683 * 153.57702 * 5 4 2 8 8 C 1.46903 * 111.00190 * 154.99942 * 7 5 4 9 9 C 1.50701 * 109.47261 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99956 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00119 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00204 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99965 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00160 * 179.72378 * 12 11 9 15 15 N 1.31409 * 119.99873 * 0.27208 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 180.27817 * 14 12 11 17 17 H 1.48496 * 109.47325 * 59.99926 * 16 14 12 18 18 H 1.48502 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46907 * 299.99629 * 16 14 12 20 20 C 1.54907 * 101.58249 * 35.50164 * 5 4 2 21 21 N 1.47019 * 110.01485 * 238.90025 * 2 1 3 22 22 C 1.34778 * 125.64391 * 59.49714 * 21 2 1 23 23 O 1.21673 * 120.00320 * 354.46914 * 22 21 2 24 24 C 1.46790 * 119.99728 * 174.47238 * 22 21 2 25 25 C 1.36412 * 125.85142 * 173.14693 * 24 22 21 26 26 C 1.41268 * 107.03427 * 179.97438 * 25 24 22 27 27 C 1.43207 * 126.45509 * 180.02562 * 26 25 24 28 28 N 8.56446 * 101.06451 * 254.91108 * 2 1 3 29 29 C 1.38179 * 107.09601 * 0.02562 * 26 25 24 30 30 N 1.34424 * 108.38242 * 359.72605 * 29 26 25 31 31 H 0.97002 * 125.41168 * 180.26220 * 30 29 26 32 32 H 1.08998 * 109.47264 * 298.98538 * 1 2 3 33 33 H 1.08994 * 109.46893 * 58.98585 * 1 2 3 34 34 H 1.08998 * 109.46841 * 178.98336 * 1 2 3 35 35 H 1.09000 * 110.72099 * 339.02140 * 4 2 1 36 36 H 1.08997 * 110.72137 * 215.74441 * 4 2 1 37 37 H 1.00902 * 111.00174 * 31.04489 * 7 5 4 38 38 H 1.09002 * 109.46816 * 60.00022 * 8 7 5 39 39 H 1.08998 * 109.47341 * 300.00022 * 8 7 5 40 40 H 0.96998 * 119.99824 * 359.97438 * 11 9 8 41 41 H 0.97004 * 120.00058 * 180.02562 * 15 14 12 42 42 H 1.08996 * 110.36781 * 81.82956 * 20 5 4 43 43 H 1.09000 * 110.36715 * 204.15522 * 20 5 4 44 44 H 1.07993 * 126.47881 * 0.02791 * 25 24 22 45 45 H 1.08002 * 125.81477 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1672 0.6946 6 1 1.4506 -2.7737 0.6623 7 7 3.4008 -2.8281 1.4877 8 6 3.2885 -4.2898 1.3929 9 6 4.3741 -4.9316 2.2179 10 8 5.1640 -4.2395 2.8247 11 7 4.4679 -6.2746 2.2806 12 6 5.4558 -6.8585 3.0307 13 1 6.1587 -6.2423 3.5717 14 6 5.5490 -8.2431 3.1000 15 7 4.6935 -8.9930 2.4422 16 14 6.8904 -9.0387 4.1282 17 1 6.7436 -8.6177 5.5447 18 1 6.7743 -10.5163 4.0359 19 1 8.2201 -8.6146 3.6210 20 6 2.8619 -1.8472 -0.7340 21 7 2.0332 -0.7135 -1.1828 22 6 1.7797 -0.3849 -2.4651 23 8 0.9998 0.5135 -2.7202 24 6 2.4444 -1.1111 -3.5540 25 6 2.1815 -0.9707 -4.8852 26 6 3.0448 -1.8524 -5.5728 27 6 3.1174 -2.0389 -6.9908 28 7 3.1737 -2.1880 -8.1155 29 6 3.8062 -2.5011 -4.6194 30 7 3.4445 -2.0469 -3.4071 31 1 3.8255 -2.3343 -2.5625 32 1 -0.3634 0.4980 0.8989 33 1 -0.3633 0.5295 -0.8807 34 1 -0.3633 -1.0275 -0.0182 35 1 1.2908 -0.7886 2.0201 36 1 2.9641 -0.2792 1.6203 37 1 3.3710 -2.5248 2.4496 38 1 3.3938 -4.5955 0.3520 39 1 2.3143 -4.6044 1.7672 40 1 3.8364 -6.8281 1.7950 41 1 4.7583 -9.9596 2.4908 42 1 3.9135 -1.5618 -0.7089 43 1 2.7166 -2.7061 -1.3893 44 1 1.4520 -0.3097 -5.3293 45 1 4.5663 -3.2430 -4.8153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725595005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:54 Heat of formation + Delta-G solvation = -4.479224 kcal Electronic energy + Delta-G solvation = -29133.524788 eV Core-core repulsion = 24958.254910 eV Total energy + Delta-G solvation = -4175.269879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.71372 -40.95788 -40.06229 -38.80234 -37.45592 -36.23176 -35.56581 -33.51749 -33.21946 -32.26016 -31.07318 -30.42703 -27.91895 -27.02434 -25.84275 -24.68728 -23.83069 -22.16437 -21.62780 -21.18584 -20.89997 -19.86777 -19.31143 -17.88973 -17.56574 -17.21759 -17.06908 -16.65603 -16.56157 -16.27756 -16.04195 -15.70233 -15.21514 -15.07839 -15.00030 -14.70189 -14.51837 -14.43647 -14.23026 -14.12159 -13.96618 -13.84768 -13.77097 -13.49295 -13.35684 -13.07553 -13.00230 -12.88968 -12.79530 -12.39822 -12.13179 -12.10285 -12.01686 -11.64333 -11.46215 -11.15570 -10.29684 -10.20638 -9.97619 -9.85989 -9.42477 -9.35169 -8.43851 -5.91644 0.38407 0.74099 1.41850 1.44935 1.54346 1.61205 1.82579 1.99983 2.10615 2.18104 2.31204 2.65884 2.86218 3.13812 3.24646 3.31051 3.47276 3.60656 3.74454 4.02940 4.12682 4.16485 4.18490 4.29766 4.34903 4.36154 4.45821 4.54411 4.57607 4.62145 4.68040 4.77929 4.89226 4.93592 5.00845 5.09878 5.25100 5.36733 5.41675 5.44584 5.61069 5.89927 6.10939 6.21798 6.33146 6.38546 6.63681 6.63808 6.99321 7.16825 7.61645 8.16588 8.72961 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.002416 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.512901 B =11587.887266 C =13926.161839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.080 3.920 6 H 0.076 0.924 7 N -0.664 5.664 8 C 0.063 3.937 9 C 0.439 3.561 10 O -0.622 6.622 11 N -0.574 5.574 12 C -0.330 4.330 13 H 0.079 0.921 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.987 3.013 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.272 1.272 20 C 0.091 3.909 21 N -0.611 5.611 22 C 0.604 3.396 23 O -0.560 6.560 24 C -0.061 4.061 25 C -0.059 4.059 26 C -0.157 4.157 27 C 0.315 3.685 28 N -0.487 5.487 29 C 0.132 3.868 30 N -0.515 5.515 31 H 0.438 0.562 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.354 0.646 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.276 0.724 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 13.057 -7.254 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.030 4.030 6 H 0.094 0.906 7 N -0.297 5.297 8 C -0.069 4.069 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.211 5.211 12 C -0.460 4.460 13 H 0.097 0.903 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.811 3.189 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.033 4.033 21 N -0.344 5.344 22 C 0.394 3.606 23 O -0.439 6.439 24 C -0.172 4.172 25 C -0.087 4.087 26 C -0.167 4.167 27 C 0.002 3.998 28 N -0.164 5.164 29 C -0.014 4.014 30 N -0.114 5.114 31 H 0.285 0.715 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.175 0.825 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.173 0.827 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.632 13.626 -9.048 17.650 hybrid contribution -0.341 -1.031 1.434 1.799 sum -6.973 12.595 -7.614 16.286 Atomic orbital electron populations 1.22127 0.94205 1.02394 1.02984 1.21610 0.95031 0.96323 0.83551 0.90484 1.22926 1.03134 0.93589 0.96479 1.22592 0.92722 0.95229 0.92507 0.90597 1.59950 1.48208 1.03976 1.17605 1.21647 0.95583 0.88742 1.00935 1.20900 0.88534 0.82255 0.85695 1.90514 1.46714 1.63000 1.50640 1.41932 1.29302 1.05592 1.44301 1.19592 1.09581 0.90498 1.26349 0.90276 1.25950 1.00206 0.96307 0.98661 1.69649 1.37426 1.06275 1.42741 0.85070 0.78219 0.77124 0.78469 1.19823 1.19871 1.19716 1.22698 0.95970 0.88411 0.96208 1.48421 1.50550 1.30699 1.04731 1.16816 0.80800 0.82300 0.80661 1.90824 1.37151 1.32681 1.83282 1.19711 1.00570 1.02442 0.94471 1.21076 0.98882 0.98296 0.90406 1.15383 1.07951 1.08886 0.84488 1.24823 0.91726 0.91643 0.91653 1.81297 1.10874 1.11127 1.13115 1.22968 0.98554 0.98044 0.81859 1.42543 1.28317 1.30413 1.10155 0.71520 0.89899 0.92974 0.92434 0.87956 0.89100 0.82498 0.87096 0.91368 0.76950 0.91410 0.88983 0.89313 0.82735 0.75577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.04 71.98 0.65 -1.74 16 2 C 0.14 2.04 3.52 45.34 0.16 2.20 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.12 -1.52 5.90 31.78 0.19 -1.33 16 5 C 0.08 1.15 3.38 46.30 0.16 1.31 16 6 H 0.08 1.02 7.83 -2.39 -0.02 1.00 16 7 N -0.66 -14.29 6.04 -488.40 -2.95 -17.24 16 8 C 0.06 1.61 6.03 85.56 0.52 2.13 16 9 C 0.44 17.86 7.82 87.66 0.69 18.54 16 10 O -0.62 -30.46 15.78 -3.08 -0.05 -30.51 16 11 N -0.57 -26.35 5.29 -306.99 -1.62 -27.98 16 12 C -0.33 -17.41 9.68 84.04 0.81 -16.60 16 13 H 0.08 4.46 7.16 -2.91 -0.02 4.44 16 14 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 15 N -0.92 -46.84 13.05 21.66 0.28 -46.56 16 16 Si 0.99 40.61 29.55 68.60 2.03 42.64 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 20 C 0.09 1.16 4.92 86.86 0.43 1.59 16 21 N -0.61 -9.76 3.08 -792.62 -2.44 -12.20 16 22 C 0.60 12.15 7.63 86.48 0.66 12.81 16 23 O -0.56 -15.07 15.60 -4.26 -0.07 -15.13 16 24 C -0.06 -0.98 6.76 40.02 0.27 -0.71 16 25 C -0.06 -0.98 10.54 22.59 0.24 -0.75 16 26 C -0.16 -2.27 5.97 -21.30 -0.13 -2.40 16 27 C 0.32 6.13 15.83 88.33 1.40 7.53 16 28 N -0.49 -12.21 18.54 19.00 0.35 -11.85 16 29 C 0.13 1.11 11.90 84.28 1.00 2.11 16 30 N -0.51 -5.03 5.28 -183.25 -0.97 -6.00 16 31 H 0.44 2.96 5.29 -92.71 -0.49 2.47 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.05 6.62 -2.39 -0.02 1.03 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 1.00 7.83 -2.39 -0.02 0.98 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.35 8.40 8.14 -89.69 -0.73 7.67 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 40 H 0.40 17.21 7.90 -92.71 -0.73 16.48 16 41 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 42 H 0.09 1.16 7.82 -2.39 -0.02 1.15 16 43 H 0.09 0.87 6.22 -2.39 -0.01 0.86 16 44 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 45 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 Total: -1.00 -72.98 385.97 1.20 -71.78 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.87 Total: 28.45 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.51 Total: 24.60 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -7.35 Total: -121.83 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.12 Total: -45.64 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -72.98 1.20 -71.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725595005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.304 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds