Wall clock time and date at job start Wed Apr 1 2020 05:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.86883 * 2 1 4 4 C 1.54317 * 109.88402 * 121.01940 * 2 1 3 5 5 H 1.08997 * 110.72094 * 23.24655 * 4 2 1 6 6 N 1.46905 * 110.71706 * 259.97409 * 4 2 1 7 7 C 1.46906 * 110.99615 * 155.00136 * 6 4 2 8 8 C 1.50707 * 109.46845 * 180.02562 * 7 6 4 9 9 O 1.21295 * 119.99714 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99880 * 179.97438 * 8 7 6 11 11 C 1.37100 * 119.99868 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00130 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99934 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99695 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47100 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47144 * 119.99927 * 15 13 11 18 18 H 1.48496 * 109.47479 * 240.00254 * 15 13 11 19 19 C 1.55152 * 102.94319 * 141.61338 * 4 2 1 20 20 C 1.54902 * 101.58189 * 324.49182 * 19 4 2 21 21 N 1.47019 * 109.88069 * 238.82828 * 2 1 3 22 22 C 1.34780 * 125.65300 * 61.59496 * 21 2 1 23 23 O 1.21683 * 119.99806 * 358.28722 * 22 21 2 24 24 C 1.46795 * 120.00050 * 178.28187 * 22 21 2 25 25 C 1.36403 * 125.84521 * 187.84427 * 24 22 21 26 26 C 1.41280 * 107.03254 * 179.85428 * 25 24 22 27 27 C 1.43200 * 126.45541 * 180.16059 * 26 25 24 28 28 N 8.56126 * 103.09989 * 256.29621 * 2 1 3 29 29 C 1.38182 * 107.08875 * 0.40832 * 26 25 24 30 30 N 1.34425 * 108.38166 * 359.74636 * 29 26 25 31 31 H 0.97003 * 125.39869 * 179.97438 * 30 29 26 32 32 H 1.08991 * 109.47090 * 298.97942 * 1 2 3 33 33 H 1.08999 * 109.46898 * 178.98242 * 1 2 3 34 34 H 1.09002 * 109.47214 * 58.98581 * 1 2 3 35 35 H 1.00897 * 111.00197 * 278.94937 * 6 4 2 36 36 H 1.09006 * 109.46964 * 299.99575 * 7 6 4 37 37 H 1.08994 * 109.47545 * 59.99755 * 7 6 4 38 38 H 0.96999 * 120.00399 * 359.97438 * 10 8 7 39 39 H 0.97009 * 119.99677 * 179.97438 * 14 13 11 40 40 H 1.08994 * 111.00693 * 82.57499 * 19 4 2 41 41 H 1.09007 * 111.00020 * 206.38608 * 19 4 2 42 42 H 1.08999 * 110.36959 * 155.84623 * 20 19 4 43 43 H 1.09000 * 110.37358 * 278.17771 * 20 19 4 44 44 H 1.07998 * 126.48906 * 359.96564 * 25 24 22 45 45 H 1.07998 * 125.80682 * 179.77055 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2436 5 1 1.3052 -1.4437 1.6201 6 7 2.4566 0.2018 2.2900 7 6 2.3872 -0.4194 3.6194 8 6 2.8048 0.5829 4.6646 9 8 3.1288 1.7041 4.3344 10 7 2.8183 0.2333 5.9661 11 6 3.1987 1.1449 6.9168 12 1 3.4872 2.1432 6.6229 13 6 3.2131 0.7843 8.2587 14 7 2.8626 -0.4307 8.6163 15 14 3.7321 2.0260 9.5541 16 1 4.0768 3.3123 8.8967 17 1 2.6149 2.2422 10.5082 18 1 4.9165 1.5112 10.2870 19 6 3.2877 -1.5132 0.6944 20 6 2.8146 -1.8804 -0.7342 21 7 2.0300 -0.7156 -1.1830 22 6 1.8072 -0.3655 -2.4653 23 8 1.1149 0.6022 -2.7202 24 6 2.3999 -1.1514 -3.5543 25 6 2.3803 -0.8236 -4.8782 26 6 3.0642 -1.8491 -5.5686 27 6 3.2907 -1.9195 -6.9808 28 7 3.4704 -1.9754 -8.1011 29 6 3.4682 -2.7743 -4.6251 30 7 3.0658 -2.3491 -3.4150 31 1 3.2196 -2.8125 -2.5768 32 1 -0.3633 0.4979 0.8989 33 1 -0.3633 -1.0275 -0.0183 34 1 -0.3634 0.5295 -0.8808 35 1 3.3790 0.5691 2.1102 36 1 1.3654 -0.7442 3.8158 37 1 3.0550 -1.2801 3.6536 38 1 2.5589 -0.6633 6.2302 39 1 2.8730 -0.6826 9.5531 40 1 4.1654 -0.8679 0.6615 41 1 3.4856 -2.4089 1.2833 42 1 3.6716 -2.0356 -1.3895 43 1 2.1886 -2.7724 -0.7091 44 1 1.9292 0.0547 -5.3158 45 1 4.0148 -3.6839 -4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755650694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:16 Heat of formation + Delta-G solvation = 24.684267 kcal Electronic energy + Delta-G solvation = -28774.562902 eV Core-core repulsion = 24600.557647 eV Total energy + Delta-G solvation = -4174.005255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22221 -40.27270 -38.51368 -37.82790 -36.74362 -34.98631 -33.89575 -32.41408 -31.57730 -31.35639 -31.04059 -29.68990 -27.13235 -25.26144 -24.31703 -23.88139 -23.15231 -22.09340 -20.99501 -20.56496 -19.32499 -18.51759 -17.97792 -17.25316 -16.75939 -16.50887 -16.03805 -15.73352 -15.30031 -15.12700 -14.63419 -14.50947 -14.41107 -14.14436 -13.98263 -13.83943 -13.69138 -13.51389 -13.48963 -13.29823 -13.14461 -12.87204 -12.62032 -12.36841 -12.33038 -12.13330 -11.81696 -11.68528 -11.55023 -11.27459 -11.10352 -11.01608 -10.38822 -10.37031 -10.28091 -9.67707 -9.58325 -9.15833 -8.86467 -8.58005 -8.20766 -8.03091 -6.48259 -3.89096 0.89735 1.30627 2.21030 2.45394 2.49884 2.85841 3.12036 3.23462 3.27493 3.30504 3.68471 3.81367 3.85468 3.95481 4.08171 4.23353 4.27234 4.38524 4.54739 4.67480 4.71279 4.85009 4.94377 5.03927 5.08618 5.19098 5.26733 5.33144 5.38193 5.40870 5.55200 5.62653 5.67223 5.84856 5.85144 5.95680 6.02052 6.14581 6.17647 6.21291 6.55522 7.01893 7.06775 7.27726 7.44789 7.49686 7.74599 7.99667 8.53782 9.11611 9.46874 9.97797 10.69348 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.001680 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.437662 B =16657.732140 C =16935.725616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.092 0.908 4 C 0.084 3.916 5 H 0.097 0.903 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.439 3.561 9 O -0.582 6.582 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.104 0.896 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.166 4.166 20 C 0.087 3.913 21 N -0.614 5.614 22 C 0.603 3.397 23 O -0.516 6.516 24 C -0.042 4.042 25 C -0.057 4.057 26 C -0.133 4.133 27 C 0.290 3.710 28 N -0.435 5.435 29 C 0.091 3.909 30 N -0.529 5.529 31 H 0.427 0.573 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.354 0.646 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.161 0.839 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -11.981 -20.151 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.028 4.028 5 H 0.115 0.885 6 N -0.287 5.287 7 C -0.080 4.080 8 C 0.224 3.776 9 O -0.466 6.466 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.206 4.206 20 C -0.037 4.037 21 N -0.349 5.349 22 C 0.392 3.608 23 O -0.391 6.391 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.143 4.143 27 C -0.025 4.025 28 N -0.111 5.111 29 C -0.054 4.054 30 N -0.129 5.129 31 H 0.273 0.727 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.179 0.821 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.532 -10.544 -21.828 24.247 hybrid contribution 0.974 -1.029 1.714 2.224 sum 0.442 -11.572 -20.114 23.210 Atomic orbital electron populations 1.22083 0.93960 1.01893 1.03636 1.21595 0.95038 0.97012 0.82220 0.88998 1.22693 0.96050 0.92630 0.91415 0.88491 1.59921 1.35106 1.33837 0.99864 1.21706 1.01796 0.95607 0.88906 1.19767 0.85212 0.89154 0.83481 1.90543 1.53400 1.21823 1.80871 1.41860 1.58791 1.14659 1.04574 1.19763 1.41488 0.95812 0.85890 0.87818 1.25262 0.97380 0.97004 0.98214 1.69617 1.48183 1.18163 1.18273 0.85802 0.78114 0.80372 0.80082 1.19179 1.20704 1.20762 1.23605 0.99915 1.02543 0.94541 1.22530 0.94767 0.89669 0.96735 1.48489 1.52618 1.28517 1.05290 1.16602 0.80442 0.83769 0.79988 1.90885 1.38289 1.27407 1.82544 1.20058 1.08876 0.90888 0.95468 1.21066 0.98378 0.98842 0.90128 1.15402 1.12992 1.00415 0.85539 1.24638 0.92903 0.93463 0.91517 1.81290 1.10015 1.08104 1.11677 1.22340 1.00221 0.99571 0.83248 1.42675 1.42180 1.18440 1.09641 0.72737 0.90631 0.92997 0.91224 0.82473 0.89415 0.93665 0.77479 0.91891 0.89678 0.89171 0.90943 0.90506 0.82126 0.79470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.09 37.16 0.34 -1.33 16 2 C 0.14 1.49 3.23 -66.96 -0.22 1.28 16 3 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 4 C 0.08 0.79 2.80 -65.88 -0.18 0.60 16 5 H 0.10 0.84 7.54 -51.93 -0.39 0.45 16 6 N -0.66 -8.88 5.93 -106.05 -0.63 -9.51 16 7 C 0.05 0.79 6.03 -4.97 -0.03 0.76 16 8 C 0.44 9.62 7.82 -10.99 -0.09 9.54 16 9 O -0.58 -15.04 15.78 5.54 0.09 -14.95 16 10 N -0.56 -13.48 5.29 -10.96 -0.06 -13.54 16 11 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -23.65 13.05 55.50 0.72 -22.93 16 15 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 C -0.17 -1.07 6.67 -24.59 -0.16 -1.23 16 20 C 0.09 0.42 5.43 -2.53 -0.01 0.41 16 21 N -0.61 -5.24 3.07 -164.50 -0.50 -5.74 16 22 C 0.60 6.17 7.62 -12.80 -0.10 6.07 16 23 O -0.52 -7.20 15.86 5.20 0.08 -7.12 16 24 C -0.04 -0.31 6.78 -82.41 -0.56 -0.87 16 25 C -0.06 -0.44 10.55 -39.09 -0.41 -0.85 16 26 C -0.13 -0.86 5.97 -106.84 -0.64 -1.50 16 27 C 0.29 2.51 15.83 -22.47 -0.36 2.16 16 28 N -0.43 -4.88 18.54 41.84 0.78 -4.10 16 29 C 0.09 0.31 11.90 -16.44 -0.20 0.11 16 30 N -0.53 -2.02 5.30 -9.28 -0.05 -2.07 16 31 H 0.43 0.61 5.15 -40.82 -0.21 0.40 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.84 6.84 -51.93 -0.36 0.49 16 35 H 0.35 5.05 7.91 -39.29 -0.31 4.74 16 36 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.08 0.61 7.77 -51.93 -0.40 0.21 16 41 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.07 0.20 5.56 -51.93 -0.29 -0.08 16 43 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 44 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 45 H 0.19 -0.05 8.06 -52.49 -0.42 -0.47 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -34.84 385.59 -7.22 -42.06 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.59 Total: 9.24 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.85 Total: 7.42 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.26 Total: -57.89 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.07 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.84 -7.22 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755650694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.747 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds