Wall clock time and date at job start Wed Apr 1 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.86883 * 2 1 4 4 C 1.54317 * 109.88402 * 121.01940 * 2 1 3 5 5 H 1.08997 * 110.72094 * 23.24655 * 4 2 1 6 6 N 1.46905 * 110.71706 * 259.97409 * 4 2 1 7 7 C 1.46906 * 110.99615 * 155.00136 * 6 4 2 8 8 C 1.50707 * 109.46845 * 180.02562 * 7 6 4 9 9 O 1.21295 * 119.99714 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99880 * 179.97438 * 8 7 6 11 11 C 1.37100 * 119.99868 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00130 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99934 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99695 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47100 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47144 * 119.99927 * 15 13 11 18 18 H 1.48496 * 109.47479 * 240.00254 * 15 13 11 19 19 C 1.55152 * 102.94319 * 141.61338 * 4 2 1 20 20 C 1.54902 * 101.58189 * 324.49182 * 19 4 2 21 21 N 1.47019 * 109.88069 * 238.82828 * 2 1 3 22 22 C 1.34780 * 125.65300 * 61.59496 * 21 2 1 23 23 O 1.21683 * 119.99806 * 358.28722 * 22 21 2 24 24 C 1.46795 * 120.00050 * 178.28187 * 22 21 2 25 25 C 1.36403 * 125.84521 * 187.84427 * 24 22 21 26 26 C 1.41280 * 107.03254 * 179.85428 * 25 24 22 27 27 C 1.43200 * 126.45541 * 180.16059 * 26 25 24 28 28 N 8.56126 * 103.09989 * 256.29621 * 2 1 3 29 29 C 1.38182 * 107.08875 * 0.40832 * 26 25 24 30 30 N 1.34425 * 108.38166 * 359.74636 * 29 26 25 31 31 H 0.97003 * 125.39869 * 179.97438 * 30 29 26 32 32 H 1.08991 * 109.47090 * 298.97942 * 1 2 3 33 33 H 1.08999 * 109.46898 * 178.98242 * 1 2 3 34 34 H 1.09002 * 109.47214 * 58.98581 * 1 2 3 35 35 H 1.00897 * 111.00197 * 278.94937 * 6 4 2 36 36 H 1.09006 * 109.46964 * 299.99575 * 7 6 4 37 37 H 1.08994 * 109.47545 * 59.99755 * 7 6 4 38 38 H 0.96999 * 120.00399 * 359.97438 * 10 8 7 39 39 H 0.97009 * 119.99677 * 179.97438 * 14 13 11 40 40 H 1.08994 * 111.00693 * 82.57499 * 19 4 2 41 41 H 1.09007 * 111.00020 * 206.38608 * 19 4 2 42 42 H 1.08999 * 110.36959 * 155.84623 * 20 19 4 43 43 H 1.09000 * 110.37358 * 278.17771 * 20 19 4 44 44 H 1.07998 * 126.48906 * 359.96564 * 25 24 22 45 45 H 1.07998 * 125.80682 * 179.77055 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2436 5 1 1.3052 -1.4437 1.6201 6 7 2.4566 0.2018 2.2900 7 6 2.3872 -0.4194 3.6194 8 6 2.8048 0.5829 4.6646 9 8 3.1288 1.7041 4.3344 10 7 2.8183 0.2333 5.9661 11 6 3.1987 1.1449 6.9168 12 1 3.4872 2.1432 6.6229 13 6 3.2131 0.7843 8.2587 14 7 2.8626 -0.4307 8.6163 15 14 3.7321 2.0260 9.5541 16 1 4.0768 3.3123 8.8967 17 1 2.6149 2.2422 10.5082 18 1 4.9165 1.5112 10.2870 19 6 3.2877 -1.5132 0.6944 20 6 2.8146 -1.8804 -0.7342 21 7 2.0300 -0.7156 -1.1830 22 6 1.8072 -0.3655 -2.4653 23 8 1.1149 0.6022 -2.7202 24 6 2.3999 -1.1514 -3.5543 25 6 2.3803 -0.8236 -4.8782 26 6 3.0642 -1.8491 -5.5686 27 6 3.2907 -1.9195 -6.9808 28 7 3.4704 -1.9754 -8.1011 29 6 3.4682 -2.7743 -4.6251 30 7 3.0658 -2.3491 -3.4150 31 1 3.2196 -2.8125 -2.5768 32 1 -0.3633 0.4979 0.8989 33 1 -0.3633 -1.0275 -0.0183 34 1 -0.3634 0.5295 -0.8808 35 1 3.3790 0.5691 2.1102 36 1 1.3654 -0.7442 3.8158 37 1 3.0550 -1.2801 3.6536 38 1 2.5589 -0.6633 6.2302 39 1 2.8730 -0.6826 9.5531 40 1 4.1654 -0.8679 0.6615 41 1 3.4856 -2.4089 1.2833 42 1 3.6716 -2.0356 -1.3895 43 1 2.1886 -2.7724 -0.7091 44 1 1.9292 0.0547 -5.3158 45 1 4.0148 -3.6839 -4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755650694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:15 Heat of formation + Delta-G solvation = -2.048707 kcal Electronic energy + Delta-G solvation = -28775.722130 eV Core-core repulsion = 24600.557647 eV Total energy + Delta-G solvation = -4175.164484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.72441 -40.97981 -40.06389 -38.82916 -37.45402 -36.22040 -35.58789 -33.27598 -33.03342 -32.18307 -31.85856 -30.30232 -28.39521 -26.55216 -25.28182 -24.77113 -23.78537 -22.66274 -21.66780 -21.27298 -20.91513 -19.88625 -19.15197 -17.91348 -17.73020 -17.32710 -17.05626 -16.70085 -16.34534 -16.25004 -15.94563 -15.66240 -15.25182 -15.17124 -14.91797 -14.82878 -14.46050 -14.31490 -14.14685 -14.09168 -14.04438 -13.79167 -13.72273 -13.48202 -13.28359 -13.08949 -12.96666 -12.89905 -12.67561 -12.53913 -12.38395 -12.11353 -12.00094 -11.74381 -11.49344 -11.20454 -10.31918 -10.20149 -9.98553 -9.84318 -9.36376 -9.26301 -8.45353 -5.93161 0.39606 0.75520 1.37555 1.43645 1.56666 1.60709 1.83089 2.00901 2.09081 2.18355 2.30897 2.66869 2.92469 3.11836 3.22793 3.39325 3.41671 3.63349 3.77561 4.02205 4.12073 4.18205 4.20069 4.25367 4.34136 4.40045 4.46740 4.53525 4.57371 4.63592 4.66843 4.72667 4.90174 5.01616 5.05810 5.09796 5.26199 5.30125 5.35499 5.43553 5.59507 5.92556 6.13677 6.27492 6.37842 6.41262 6.63020 6.64970 7.01527 7.15753 7.59970 8.15900 8.71964 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.001680 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.437662 B =16657.732140 C =16935.725616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.056 0.944 4 C 0.087 3.913 5 H 0.115 0.885 6 N -0.677 5.677 7 C 0.071 3.929 8 C 0.435 3.565 9 O -0.627 6.627 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.076 0.924 13 C -0.010 4.010 14 N -0.918 5.918 15 Si 0.988 3.012 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.158 4.158 20 C 0.084 3.916 21 N -0.612 5.612 22 C 0.598 3.402 23 O -0.569 6.569 24 C -0.056 4.056 25 C -0.065 4.065 26 C -0.160 4.160 27 C 0.314 3.686 28 N -0.489 5.489 29 C 0.141 3.859 30 N -0.510 5.510 31 H 0.442 0.558 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.347 0.653 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.277 0.723 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -15.672 -19.761 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.074 0.926 4 C -0.023 4.023 5 H 0.133 0.867 6 N -0.308 5.308 7 C -0.061 4.061 8 C 0.223 3.777 9 O -0.513 6.513 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.094 0.906 13 C -0.210 4.210 14 N -0.559 5.559 15 Si 0.813 3.187 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.198 4.198 20 C -0.038 4.038 21 N -0.345 5.345 22 C 0.389 3.611 23 O -0.449 6.449 24 C -0.167 4.167 25 C -0.093 4.093 26 C -0.170 4.170 27 C 0.001 3.999 28 N -0.166 5.166 29 C -0.005 4.005 30 N -0.112 5.112 31 H 0.291 0.709 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.167 0.833 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.164 0.836 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.473 -14.299 -21.409 25.750 hybrid contribution 0.656 0.134 1.555 1.693 sum 1.129 -14.165 -19.854 24.415 Atomic orbital electron populations 1.21991 0.94354 1.02553 1.01972 1.21413 0.94738 0.95936 0.83887 0.92576 1.22689 0.97981 0.92074 0.89604 0.86733 1.59827 1.34943 1.35845 1.00222 1.21541 1.03267 0.94048 0.87278 1.21016 0.82963 0.89767 0.83944 1.90515 1.54800 1.24362 1.81650 1.41914 1.59506 1.14478 1.05103 1.19671 1.43536 0.95661 0.87424 0.90577 1.25948 0.96942 0.98718 0.99371 1.69662 1.48206 1.19037 1.18992 0.84933 0.78227 0.77904 0.77660 1.20049 1.19787 1.19552 1.23558 0.97811 1.02840 0.95570 1.22866 0.95833 0.89060 0.96068 1.48477 1.52448 1.29298 1.04256 1.16986 0.79907 0.83389 0.80861 1.90855 1.40772 1.29814 1.83425 1.19515 1.10627 0.92449 0.94143 1.21075 0.98476 0.98965 0.90777 1.15411 1.15096 1.01622 0.84911 1.24870 0.91389 0.91949 0.91711 1.81310 1.12207 1.09938 1.13166 1.23030 0.96705 0.99125 0.81667 1.42599 1.40965 1.17019 1.10632 0.70899 0.91700 0.91033 0.93503 0.83278 0.87519 0.90316 0.76827 0.91343 0.90638 0.86493 0.88356 0.87098 0.83608 0.74598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.09 71.98 0.65 -2.56 16 2 C 0.14 2.94 3.23 45.34 0.15 3.09 16 3 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 4 C 0.09 1.44 2.80 46.10 0.13 1.57 16 5 H 0.11 1.53 7.54 -2.39 -0.02 1.52 16 6 N -0.68 -17.67 5.93 -489.44 -2.90 -20.58 16 7 C 0.07 2.00 6.03 85.56 0.52 2.51 16 8 C 0.44 19.17 7.82 87.66 0.69 19.86 16 9 O -0.63 -33.33 15.78 -3.08 -0.05 -33.38 16 10 N -0.57 -27.64 5.29 -306.98 -1.62 -29.26 16 11 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 12 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 14 N -0.92 -47.57 13.05 21.66 0.28 -47.29 16 15 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 19 C -0.16 -1.42 6.67 31.98 0.21 -1.20 16 20 C 0.08 0.44 5.43 86.85 0.47 0.91 16 21 N -0.61 -9.49 3.07 -792.59 -2.43 -11.92 16 22 C 0.60 12.08 7.62 86.48 0.66 12.74 16 23 O -0.57 -16.97 15.86 -4.30 -0.07 -17.04 16 24 C -0.06 -0.75 6.78 40.03 0.27 -0.48 16 25 C -0.07 -0.98 10.55 22.59 0.24 -0.74 16 26 C -0.16 -1.73 5.97 -21.30 -0.13 -1.85 16 27 C 0.31 5.14 15.83 88.33 1.40 6.54 16 28 N -0.49 -10.92 18.54 19.00 0.35 -10.57 16 29 C 0.14 0.27 11.90 84.28 1.00 1.28 16 30 N -0.51 -1.64 5.30 -183.26 -0.97 -2.61 16 31 H 0.44 -1.29 5.15 -92.71 -0.48 -1.77 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.21 6.84 -2.39 -0.02 1.19 16 35 H 0.35 9.85 7.91 -89.70 -0.71 9.14 16 36 H 0.11 2.67 8.08 -2.38 -0.02 2.65 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.40 17.94 7.90 -92.71 -0.73 17.21 16 39 H 0.28 13.44 8.31 -92.70 -0.77 12.67 16 40 H 0.07 0.87 7.77 -2.39 -0.02 0.85 16 41 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.10 0.03 5.56 -2.39 -0.01 0.02 16 43 H 0.11 -0.05 8.09 -2.39 -0.02 -0.07 16 44 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.24 -1.80 8.06 -2.91 -0.02 -1.83 16 Total: -1.00 -82.82 385.59 1.32 -81.50 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.84 Total: 23.15 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.54 Total: 24.11 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -7.29 Total: -122.23 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.12 Total: -50.42 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -82.82 1.32 -81.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755650694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.456 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds