Wall clock time and date at job start Wed Apr 1 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87349 * 2 1 4 4 C 1.54328 * 109.88356 * 238.98273 * 2 1 3 5 5 H 1.08997 * 110.72037 * 144.23190 * 4 2 1 6 6 N 1.46902 * 110.71840 * 21.13953 * 4 2 1 7 7 C 1.46895 * 110.99941 * 154.99959 * 6 4 2 8 8 C 1.50701 * 109.47449 * 179.97438 * 7 6 4 9 9 O 1.21295 * 119.99599 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00616 * 180.02562 * 8 7 6 11 11 C 1.37090 * 120.00396 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00120 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00319 * 179.97438 * 11 10 8 14 14 N 1.31415 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00184 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46981 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46998 * 299.99962 * 15 13 11 18 18 H 1.48493 * 109.47136 * 60.00015 * 15 13 11 19 19 C 1.55159 * 102.94111 * 262.77563 * 4 2 1 20 20 C 1.54903 * 101.58087 * 324.49797 * 19 4 2 21 21 N 1.47018 * 109.88334 * 121.17641 * 2 1 3 22 22 C 1.34783 * 125.64714 * 300.44419 * 21 2 1 23 23 O 1.21684 * 119.99870 * 358.19823 * 22 21 2 24 24 C 1.46795 * 120.00014 * 178.21207 * 22 21 2 25 25 C 1.36404 * 125.84686 * 187.89797 * 24 22 21 26 26 C 1.41278 * 107.03445 * 179.84724 * 25 24 22 27 27 C 1.43195 * 126.45587 * 180.15616 * 26 25 24 28 28 N 8.56109 * 97.89534 * 107.22144 * 2 1 3 29 29 C 1.38181 * 107.08927 * 0.40809 * 26 25 24 30 30 N 1.34433 * 108.38216 * 359.75090 * 29 26 25 31 31 H 0.96998 * 125.40234 * 180.02562 * 30 29 26 32 32 H 1.09006 * 109.46836 * 181.01647 * 1 2 3 33 33 H 1.08997 * 109.47149 * 301.01556 * 1 2 3 34 34 H 1.09001 * 109.47234 * 61.01971 * 1 2 3 35 35 H 1.00905 * 110.99787 * 278.95408 * 6 4 2 36 36 H 1.09004 * 109.47068 * 59.99941 * 7 6 4 37 37 H 1.08995 * 109.47644 * 299.99826 * 7 6 4 38 38 H 0.97003 * 119.99929 * 0.02562 * 10 8 7 39 39 H 0.96996 * 120.00189 * 180.02562 * 14 13 11 40 40 H 1.08997 * 111.00333 * 82.57156 * 19 4 2 41 41 H 1.09004 * 111.00097 * 206.41980 * 19 4 2 42 42 H 1.08999 * 110.36820 * 278.17120 * 20 19 4 43 43 H 1.09002 * 110.45751 * 155.89681 * 20 19 4 44 44 H 1.08005 * 126.48303 * 359.96091 * 25 24 22 45 45 H 1.08003 * 125.80855 * 179.76622 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 2.9639 -0.2791 -1.6205 6 7 1.0265 -0.7996 -2.2915 7 6 1.6356 -0.9456 -3.6202 8 6 0.5524 -0.9956 -4.6667 9 8 -0.6126 -0.9178 -4.3379 10 7 0.8778 -1.1278 -5.9679 11 6 -0.1076 -1.1727 -6.9199 12 1 -1.1449 -1.1026 -6.6272 13 6 0.2280 -1.3085 -8.2614 14 7 1.4900 -1.3944 -8.6176 15 14 -1.1148 -1.3705 -9.5585 16 1 -0.4990 -1.5187 -10.9017 17 1 -2.0066 -2.5278 -9.2929 18 1 -1.9062 -0.1149 -9.5120 19 6 2.3519 -2.1686 -0.6953 20 6 2.8568 -1.8508 0.7342 21 7 2.0300 -0.7157 1.1829 22 6 1.7753 -0.3879 2.4652 23 8 1.1036 0.5941 2.7202 24 6 2.3085 -1.2155 3.5541 25 6 2.0042 -1.0870 4.8776 26 6 2.7321 -2.0817 5.5680 27 6 2.7176 -2.3209 6.9798 28 7 2.7060 -2.5106 8.0998 29 6 3.4651 -2.7766 4.6250 30 7 3.2062 -2.2509 3.4152 31 1 3.5903 -2.5531 2.5773 32 1 -0.3633 -1.0276 0.0182 33 1 -0.3633 0.5295 0.8807 34 1 -0.3634 0.4979 -0.8990 35 1 0.3656 -1.5410 -2.1132 36 1 2.2162 -1.8675 -3.6545 37 1 2.2905 -0.0964 -3.8151 38 1 1.8094 -1.1912 -6.2308 39 1 1.7243 -1.4888 -9.5540 40 1 1.4452 -2.7727 -0.6642 41 1 3.1271 -2.6601 -1.2833 42 1 3.9091 -1.5677 0.7107 43 1 2.7102 -2.7093 1.3896 44 1 1.3323 -0.3631 5.3147 45 1 4.1323 -3.6018 4.8258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755650696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:24 Heat of formation + Delta-G solvation = 28.671886 kcal Electronic energy + Delta-G solvation = -28888.005187 eV Core-core repulsion = 24714.172848 eV Total energy + Delta-G solvation = -4173.832339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21833 -40.30550 -38.52137 -37.83114 -36.74095 -34.99815 -33.89749 -32.31649 -31.44041 -31.32494 -31.03113 -29.67091 -26.84531 -25.49849 -24.43058 -23.85755 -23.27872 -22.22787 -20.90731 -20.00149 -19.39463 -18.66596 -17.98128 -17.14181 -16.70969 -16.39789 -16.13611 -15.79722 -15.36500 -15.22780 -14.61123 -14.54567 -14.42570 -14.13311 -13.86689 -13.80784 -13.70885 -13.55914 -13.36915 -13.15713 -13.03026 -12.89635 -12.54656 -12.41331 -12.34802 -12.27587 -11.63077 -11.61513 -11.52951 -11.08657 -11.06641 -10.93570 -10.48677 -10.31717 -10.26829 -9.67111 -9.55972 -9.14099 -8.85723 -8.57200 -8.19169 -8.02735 -6.47757 -3.88749 0.90341 1.31084 2.21831 2.45816 2.51143 2.86991 3.16030 3.22415 3.26628 3.27828 3.69040 3.81991 3.86170 3.96953 4.08519 4.24115 4.28192 4.38725 4.54962 4.69284 4.72601 4.89114 4.90601 5.05267 5.08386 5.19430 5.32930 5.37723 5.43979 5.45051 5.60736 5.63557 5.70875 5.85654 5.87858 6.03192 6.09224 6.17507 6.29254 6.52656 6.56333 7.01707 7.09176 7.27966 7.45570 7.49496 7.76096 7.99467 8.54169 9.11697 9.47165 9.98196 10.69689 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.001691 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.658998 B =16559.075388 C =16918.144082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.083 0.917 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.652 5.652 7 C 0.050 3.950 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.024 3.976 14 N -0.901 5.901 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.274 1.274 18 H -0.273 1.273 19 C -0.164 4.164 20 C 0.087 3.913 21 N -0.615 5.615 22 C 0.603 3.397 23 O -0.516 6.516 24 C -0.042 4.042 25 C -0.057 4.057 26 C -0.133 4.133 27 C 0.290 3.710 28 N -0.435 5.435 29 C 0.090 3.910 30 N -0.529 5.529 31 H 0.427 0.573 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.355 0.645 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.161 0.839 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -4.478 20.018 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.029 4.029 5 H 0.114 0.886 6 N -0.284 5.284 7 C -0.082 4.082 8 C 0.224 3.776 9 O -0.467 6.467 10 N -0.198 5.198 11 C -0.431 4.431 12 H 0.121 0.879 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.198 1.198 19 C -0.204 4.204 20 C -0.037 4.037 21 N -0.350 5.350 22 C 0.392 3.608 23 O -0.391 6.391 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.025 4.025 28 N -0.111 5.111 29 C -0.054 4.054 30 N -0.129 5.129 31 H 0.273 0.727 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.176 0.824 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.179 0.821 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.463 -3.478 21.684 23.913 hybrid contribution 0.645 -1.280 -1.690 2.216 sum 10.108 -4.759 19.994 22.904 Atomic orbital electron populations 1.21958 0.93246 1.02240 1.03673 1.21578 0.96245 0.95630 0.82246 0.89924 1.22630 0.95234 0.93509 0.91541 0.88605 1.60029 1.14878 1.53823 0.99665 1.21723 0.96524 1.00868 0.89091 1.19763 0.89666 0.84711 0.83472 1.90539 1.19831 1.55396 1.80921 1.41845 1.09809 1.63600 1.04576 1.19658 0.90283 1.47252 0.85884 0.87935 1.25257 0.97167 0.97168 0.98210 1.69597 1.16254 1.49917 1.18486 0.85917 0.80194 0.79107 0.79015 1.20964 1.19916 1.19835 1.23586 1.02964 0.99366 0.94490 1.22523 0.95535 0.88940 0.96750 1.48529 1.50778 1.30324 1.05322 1.16596 0.80261 0.83941 0.79986 1.90885 1.39148 1.26519 1.82566 1.20073 1.02851 0.96854 0.95505 1.21065 0.99303 0.97936 0.90138 1.15401 1.08951 1.04440 0.85559 1.24639 0.93150 0.93208 0.91519 1.81290 1.09279 1.08853 1.11676 1.22341 1.00379 0.99422 0.83265 1.42681 1.34476 1.26128 1.09660 0.72735 0.93199 0.92049 0.89099 0.82362 0.93730 0.89429 0.77482 0.91787 0.89744 0.89218 0.90490 0.91009 0.82135 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.26 37.16 0.31 -1.57 16 2 C 0.15 1.50 3.47 -66.95 -0.23 1.26 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.08 0.76 3.15 -65.87 -0.21 0.56 16 5 H 0.10 0.80 7.82 -51.93 -0.41 0.39 16 6 N -0.65 -8.62 4.39 -106.05 -0.47 -9.08 16 7 C 0.05 0.75 6.03 -4.98 -0.03 0.72 16 8 C 0.44 9.55 7.82 -10.99 -0.09 9.46 16 9 O -0.58 -14.88 15.78 5.54 0.09 -14.80 16 10 N -0.56 -13.42 5.29 -10.96 -0.06 -13.48 16 11 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 12 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 13 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 14 N -0.90 -23.62 13.05 55.50 0.72 -22.90 16 15 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 C -0.16 -1.05 6.67 -24.58 -0.16 -1.21 16 20 C 0.09 0.42 5.44 -2.53 -0.01 0.40 16 21 N -0.61 -5.24 3.08 -164.51 -0.51 -5.75 16 22 C 0.60 6.20 7.58 -12.80 -0.10 6.10 16 23 O -0.52 -7.24 15.84 5.20 0.08 -7.15 16 24 C -0.04 -0.31 6.78 -82.41 -0.56 -0.87 16 25 C -0.06 -0.45 10.55 -39.09 -0.41 -0.86 16 26 C -0.13 -0.87 5.97 -106.84 -0.64 -1.51 16 27 C 0.29 2.53 15.83 -22.48 -0.36 2.17 16 28 N -0.43 -4.90 18.54 41.84 0.78 -4.12 16 29 C 0.09 0.31 11.90 -16.43 -0.20 0.12 16 30 N -0.53 -2.05 5.30 -9.27 -0.05 -2.10 16 31 H 0.43 0.63 5.15 -40.82 -0.21 0.42 16 32 H 0.05 0.60 7.98 -51.93 -0.41 0.18 16 33 H 0.06 0.83 6.82 -51.93 -0.35 0.47 16 34 H 0.09 1.27 7.40 -51.93 -0.38 0.89 16 35 H 0.36 4.98 7.45 -39.29 -0.29 4.69 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.39 8.90 7.90 -40.82 -0.32 8.57 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.08 0.62 7.77 -51.93 -0.40 0.21 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 43 H 0.07 0.21 5.54 -51.93 -0.29 -0.08 16 44 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 45 H 0.19 -0.04 8.06 -52.48 -0.42 -0.46 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -34.50 382.79 -7.13 -41.63 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.54 Total: 9.50 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -2.92 Total: 7.06 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.42 Total: -57.43 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.17 Total: -21.95 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.50 -7.13 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755650696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.304 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds